mRNA_A-nodosum_M_contig1031.55.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.55.1
Unique NamemRNA_A-nodosum_M_contig1031.55.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1031.55.1 vs. uniprot
Match: D7FIB1_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIB1_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 1.020e-84
Identity = 164/326 (50.31%), Postives = 198/326 (60.74%), Query Frame = 3 
Query:    3 GVSILLTMMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRVIRSFVFGNDMVCRLSLSNAYDLFRELEEVDAIEASLAQRVRYLASERRPLVSVADDGLGVVRLCVAFRYPTILRHSTRPRRGGEGGGVKGGD--------GGSR-QGERWEHPVAAFVREKLAEDFTPKDTT---------------------AWRPRGFKRWGKTATEAPSGGVQHDSDGVSSSGKXXXXXXXXRYQELFIPGSVYHMRKLDVESDEGERRFGGSE-----RRATYWIKRKPPQEFAKLLVLDTGIVDHLPKSYEDALHALYGGGLP 875
            GVSILLTMM+L++K +LGLG T VLCYAFAPPPVFGP DKL RE +R IRSFVFGNDMVCR+SL++AY+LFR+L+EV+ I ASL QR+ YL +E RP +S+ DDG G V + VA+RY TIL H TR R    GG  K GD        GG R  G    HPV  FVR KLAE FT                          AWR    +   KT++E   GG   ++DG S            RY  L IPG++YH+RKL  ES         S      R   YW++R+ P+EFA+LL++DT IVDHLP +YEDALHALYG GLP
Sbjct:  149 GVSILLTMMLLRRKSELGLGSTRVLCYAFAPPPVFGPLDKLSRETKRAIRSFVFGNDMVCRMSLASAYELFRDLKEVEGIGASLPQRLGYLVNEHRPRLSIHDDGRGDVGMRVAYRYATIL-HRTRSR----GGNNKRGDYRSSHRGAGGKRGAGATGGHPVEDFVRNKLAEGFTETGAARGADRKRDRGGGVRPRMASEDAWRTGREREVSKTSSECGGGG---EADGGSGD----------RYTRLLIPGTIYHIRKLGPESAAAASAGVCSANPLGLRSKLYWMERQQPEEFARLLMVDTAIVDHLPLAYEDALHALYGDGLP 456
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BLAST of mRNA_A-nodosum_M_contig1031.55.1 vs. uniprot
Match: A0A6H5JNB4_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB4_9PHAE)

HSP 1 Score: 261 bits (668), Expect = 1.390e-79
Identity = 159/322 (49.38%), Postives = 196/322 (60.87%), Query Frame = 3 
Query:    3 GVSILLTMMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRVIRSFVFGNDMVCRLSLSNAYDLFRELEEVDAIEASLAQRVRYLASERRPLVSVADDGLGVVRLCVAFRYPTILRHSTRPR-----RGGEGGGVKGGDGGSRQGERWEHPVAAFVREKLAEDFTPKDTT---------------------AWRPRGFKRWGKTATEAPSGGVQHDSDGVSSSGKXXXXXXXXRYQELFIPGSVYHMRKLDVESDEGERRFGGSE-----RRATYWIKRKPPQEFAKLLVLDTGIVDHLPKSYEDALHALYGGGLP 875
            GVSILLTMM+L+++ +LGLG T VLCYAFAPPPVFGP +KL  E Q  IRSFVFGNDMV R+SL++AY+LFR+L+EV+ I ASL QR+ YL +E RP +S+ DDGLG VR+ VA+RY TIL H TR R     RGG     +G  G    G    HPV  FVR KLAE FT                          AWR        K+++E   GGV+  +DG S+           RY  L IPG++YH+RKL  ES         SE     R   YW++R+ P+EF +LL++DT IVDHLP +YEDALHALYG GLP
Sbjct:  274 GVSILLTMMLLRRRSELGLGSTRVLCYAFAPPPVFGPLEKLSGETQWAIRSFVFGNDMVSRMSLASAYELFRDLKEVERIGASLPQRLGYLVNEHRPRLSIHDDGLGDVRMRVAYRYATIL-HRTRSRGGNNKRGGYRSSQRGAGGKRGAGATSVHPVEDFVRNKLAEGFTETGAARGAYQKRDRDGGVGPRMASEDAWRTGRELEVRKSSSER-GGGVE--ADGGSAD----------RYTRLLIPGTIYHIRKLGPESAAAASAGVCSENPVGLRSKLYWMERQQPEEFERLLMVDTAIVDHLPLAYEDALHALYGDGLP 581
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BLAST of mRNA_A-nodosum_M_contig1031.55.1 vs. uniprot
Match: A0A7S0R525_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0R525_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 3.480e-6
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = 3 
Query:    3 GVSILLTMMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRVIRSFVFGNDMVCRLSLSNAYDLFRELEEVDAIEASLAQRV 266
            G +ILLTM++L    D      +V C+AFAPPPVF P +K+     R I+ FV+ ND+V RLSL +   L  +++  D++      R+
Sbjct:  322 GTAILLTMLLLD---DPIFVTCQVECWAFAPPPVFTPLEKISPRCHRAIKCFVYRNDLVPRLSLFSVRRLCLQVKAADSMPLKAITRL 406
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIB1_ECTSI1.020e-8450.31Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JNB4_9PHAE1.390e-7949.38Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S0R525_9CHLO3.480e-638.64Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:246047..248154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIB1
PFAMsLipase_3
Model size941
Max annot lvl2759|Eukaryota
KEGG koko:K13806
KEGG Pathwayko04723,ko04745,ko04925,map04723,map04745,map04925
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.89e-82
EggNOG OGsKOG2088@1|root,KOG2088@2759|Eukaryota
Descriptionretrograde trans-synaptic signaling by lipid
Cds size885
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.401368-UTR-A-nodosum_M_contig1031:246046..2460791680866400.401368-UTR-A-nodosum_M_contig1031:246046..246079Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 246047..246079 -
1680866400.4454856-UTR-A-nodosum_M_contig1031:248131..2481541680866400.4454856-UTR-A-nodosum_M_contig1031:248131..248154Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 248132..248154 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.4113262-CDS-A-nodosum_M_contig1031:246079..2462081680866400.4113262-CDS-A-nodosum_M_contig1031:246079..246208Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 246080..246208 -
1680866400.4222326-CDS-A-nodosum_M_contig1031:246638..2471721680866400.4222326-CDS-A-nodosum_M_contig1031:246638..247172Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 246639..247172 -
1680866400.433873-CDS-A-nodosum_M_contig1031:247909..2481311680866400.433873-CDS-A-nodosum_M_contig1031:247909..248131Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 247910..248131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.55.1prot_A-nodosum_M_contig1031.55.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 246080..248131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.55.1

>prot_A-nodosum_M_contig1031.55.1 ID=prot_A-nodosum_M_contig1031.55.1|Name=mRNA_A-nodosum_M_contig1031.55.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=295bp
MMILKQKRDLGLGRTEVLCYAFAPPPVFGPADKLPREAQRVIRSFVFGND
MVCRLSLSNAYDLFRELEEVDAIEASLAQRVRYLASERRPLVSVADDGLG
VVRLCVAFRYPTILRHSTRPRRGGEGGGVKGGDGGSRQGERWEHPVAAFV
REKLAEDFTPKDTTAWRPRGFKRWGKTATEAPSGGVQHDSDGVSSSGKGT
GDGHRHRYQELFIPGSVYHMRKLDVESDEGERRFGGSERRATYWIKRKPP
QEFAKLLVLDTGIVDHLPKSYEDALHALYGGGLPPPPPSTDRPT*
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mRNA from alignment at A-nodosum_M_contig1031:246047..248154-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.55.1 ID=mRNA_A-nodosum_M_contig1031.55.1|Name=mRNA_A-nodosum_M_contig1031.55.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2108bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:246047..248154- (Ascophyllum nodosum dioecious)
CAGGGGTTTCCATCTTGTTGACCATGATGATTCTCAAGCAGAAGAGGGAC
CTCGGCCTGGGCCGCACGGAGGTGCTCTGCTACGCCTTCGCGCCACCGCC
AGTGTTCGGCCCGGCGGACAAGCTTCCGCGGGAAGCTCAGAGGGTGATTC
GATCATTCGTGTTTGGGAACGACATGGTGTGCCGGTTGTCCCTCTCGAAC
GCGTACGATCTCTTCCGCGAGTTGGAAGAGGTGGACGCCATCGAGGTGGG
CTCTCTGAACAACGTTTCTCCTGGCCCAAGTCATTTCCACTTCGGCATGT
TTTATGTTTGTTTTTTTCTCTGGGTTGAGGGGAGGGGGAGGGTCGAGTTT
TGGGGACCGTTTTGCTTTGAGATATCAGGTCAGCCCCTCTTGTGGCCCCA
TGCTTGCTAAATGAGACAATACTTCTCTAGTTAGCTATTAGAATATTAGA
ATAGTTAGCTAAATAAATCGGGGGGGGGGGGAGGGAAACATGAAAAAAGG
AGATGAAGATTTTTTTCTTCTTCTTTTACACGATAGCTTCTCCCTATACC
AGGGTTTATTTTTTCGATCTTGTCGGGAGAAAAATTCCTCAGCCAACGAA
GTTGTTGGGAAAAGGACCAACACAACTGTGGTGTCACACCCCGTCATGAA
GTAAGTATGCTATTAAGAAGCCTCTCCTGCCTCTACCTACTACGCCCGAA
ACAACCTCAATGGCGCCGTAGACGCTCTCCAGCAACCACGCCCAAAAGCC
CACGCATACGCCCAAGTCCGCGCCCGAGCCCATTTCTCGGGGTGCAAATA
CCAGATACCTTTCGAAAGACTTGCCTACGTGTACTGATAACATAATAGCA
CCCGTCTTGCTGTAAACCGTTTGTAGATGGACTATGTCGTGGCTGTTCAG
AAGGTGTCATTGAGCGCACGAGCCCGCCCCTTTCGTCACCTGTTTGTGCG
ATGCCGCCGTATGGGAAAACTCTTCCGTCAAGGCGAGCTTGGCGCAGCGG
GTCAGGTACCTGGCCAGTGAGCGACGGCCGCTGGTGAGCGTAGCTGACGA
CGGCCTCGGTGTGGTACGCTTGTGCGTCGCCTTTCGCTACCCCACGATAT
TGCGTCACTCTACGAGGCCTCGTAGAGGCGGCGAAGGCGGCGGCGTGAAG
GGTGGAGATGGGGGGAGCCGTCAGGGCGAGAGATGGGAGCATCCCGTTGC
AGCTTTCGTGCGCGAGAAGCTGGCGGAAGACTTTACCCCGAAGGACACCA
CGGCGTGGCGACCACGGGGATTTAAAAGATGGGGGAAAACGGCCACGGAA
GCTCCTAGCGGCGGCGTCCAGCACGACAGCGACGGCGTTAGTAGCAGCGG
TAAAGGTACAGGCGATGGCCATAGGCATCGATACCAGGAACTCTTTATCC
CCGGAAGCGTGTATCATATGAGGAAGCTTGATGTGGAGAGCGACGAAGGC
GAAAGGCGCTTCGGTGGGAGCGAGAGACGCGCGACGTACTGGATTAAGCG
AAAACCCCCACAAGAGGTGCGTCGACTTAATATAATAGTATTTTTGTTTT
TGTTTTGAACCGTTAAAAGTTTAGTGTTTTCTCTCCCCCCCCCCCCCATC
ACGCTCTCCACCTTTTGTTTTGACGTTTTGACTCTACCGAAGACCGTGTG
TGATGCGCGATCGTCCTGCTTCCGCGGCCAGCGGCTGATCGGTTCGGAGC
TGGCCTCCTGCGATGAAACGGCGAGGCCTGTGCCTCTTACCGAGAGAAGA
TAGGGGCGTCTATGATTTTTAGGCTTCATCAGAGTCTGTTCCTCTTTGAG
TCTGTCTCTGTTTACAGCAGCAGGCCTTTTTCTTGCCCTTGATGTACCAG
GTATCTGTGCTTGTGTGCTAAGTTTTCCACACTCCGTGTGTGTGCTCTTG
TTTATTTCTTTCTTTGGCGTTTGCCCCCCCCGCTCTTGCCGAGCAGTTCG
CGAAGCTTCTCGTGTTGGACACGGGCATCGTGGACCACCTGCCCAAGTCG
TACGAAGACGCATTGCATGCCTTGTACGGGGGCGGTCTGCCTCCACCCCC
CCCCTCAACCGACCGACCGACTTGACGAGACCTGCTGACGATGCCGCCGT
CCGTCGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:246047..248154-

>mRNA_A-nodosum_M_contig1031.55.1 ID=mRNA_A-nodosum_M_contig1031.55.1|Name=mRNA_A-nodosum_M_contig1031.55.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=885bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:246047..248154- (Ascophyllum nodosum dioecious)
ATGATGATTCTCAAGCAGAAGAGGGACCTCGGCCTGGGCCGCACGGAGGT
GCTCTGCTACGCCTTCGCGCCACCGCCAGTGTTCGGCCCGGCGGACAAGC
TTCCGCGGGAAGCTCAGAGGGTGATTCGATCATTCGTGTTTGGGAACGAC
ATGGTGTGCCGGTTGTCCCTCTCGAACGCGTACGATCTCTTCCGCGAGTT
GGAAGAGGTGGACGCCATCGAGGCGAGCTTGGCGCAGCGGGTCAGGTACC
TGGCCAGTGAGCGACGGCCGCTGGTGAGCGTAGCTGACGACGGCCTCGGT
GTGGTACGCTTGTGCGTCGCCTTTCGCTACCCCACGATATTGCGTCACTC
TACGAGGCCTCGTAGAGGCGGCGAAGGCGGCGGCGTGAAGGGTGGAGATG
GGGGGAGCCGTCAGGGCGAGAGATGGGAGCATCCCGTTGCAGCTTTCGTG
CGCGAGAAGCTGGCGGAAGACTTTACCCCGAAGGACACCACGGCGTGGCG
ACCACGGGGATTTAAAAGATGGGGGAAAACGGCCACGGAAGCTCCTAGCG
GCGGCGTCCAGCACGACAGCGACGGCGTTAGTAGCAGCGGTAAAGGTACA
GGCGATGGCCATAGGCATCGATACCAGGAACTCTTTATCCCCGGAAGCGT
GTATCATATGAGGAAGCTTGATGTGGAGAGCGACGAAGGCGAAAGGCGCT
TCGGTGGGAGCGAGAGACGCGCGACGTACTGGATTAAGCGAAAACCCCCA
CAAGAGTTCGCGAAGCTTCTCGTGTTGGACACGGGCATCGTGGACCACCT
GCCCAAGTCGTACGAAGACGCATTGCATGCCTTGTACGGGGGCGGTCTGC
CTCCACCCCCCCCCTCAACCGACCGACCGACTTGA
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