mRNA_A-nodosum_M_contig1031.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.5.1
Unique NamemRNA_A-nodosum_M_contig1031.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: D7FTP3_ECTSI (Putative GPI-anchor transamidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP3_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 6.890e-9
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 2 
Query:  452 QVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYAKG 568
            +VLFMVDTCQA TLF+EI S +++CIGSSVRGENSYA+G
Sbjct:  219 RVLFMVDTCQAMTLFEEIDSKDVICIGSSVRGENSYARG 257
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A6B2LD54_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LD54_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 4.220e-6
Identity = 24/37 (64.86%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:  452 QVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            ++LFMVDTCQA+TLF++I SP +L IGSS++G+NSY+
Sbjct:  150 EILFMVDTCQASTLFNDIYSPNVLTIGSSIKGQNSYS 186
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A446IKT8_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446IKT8_TRITD)

HSP 1 Score: 55.5 bits (132), Expect = 5.080e-6
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            K++L MVDTCQA TLF ++ SP +L IGSS++GENSY+
Sbjct:   37 KELLIMVDTCQAATLFSQLQSPGVLAIGSSMKGENSYS 74
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: F0WEL5_9STRA (GPIanchor transamidase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEL5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.850e-6
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  413 DGAMPAHVCVVKKQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYAKGVRR 577
            D     HV    K++LFMVDTCQA +LF+ ITSP +  IGSS  GENSYA  V R
Sbjct:  183 DAFQDMHVKKRYKKILFMVDTCQAGSLFNAITSPNVATIGSSKVGENSYAHHVDR 237
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A2P2JFN2_RHIMU (GPI-anchor transamidase family protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JFN2_RHIMU)

HSP 1 Score: 57.4 bits (137), Expect = 8.590e-6
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            K++L MVDTCQA TLFD++ SP +L IGSS++GENSY+
Sbjct:  157 KELLIMVDTCQAATLFDQLHSPGVLAIGSSMKGENSYS 194
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: UPI000848B585 (LOW QUALITY PROTEIN: putative GPI-anchor transamidase n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI000848B585)

HSP 1 Score: 57.0 bits (136), Expect = 1.260e-5
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            K++L MVDTCQA TLF+++ SP +L IGSS+RGENSY+
Sbjct:  192 KELLIMVDTCQAATLFNQLQSPGVLAIGSSMRGENSYS 229
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A7S1UWN3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWN3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.410e-5
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYAKGVRRP 580
            K VLF+ DTCQA TL D+IT+P +  +GSS+RG+NSYA G   P
Sbjct:   73 KSVLFITDTCQAFTLGDKITAPNVYFLGSSLRGQNSYAHGSPHP 116
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BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A453NS10_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NS10_AEGTS)

HSP 1 Score: 55.5 bits (132), Expect = 1.470e-5
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            K++L MVDTCQA TLF ++ SP +L IGSS++GENSY+
Sbjct:    4 KELLIMVDTCQAATLFSQLQSPGVLAIGSSMKGENSYS 41
[Close]
BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A7J6WS27_THATH (Gpi-anchor transamidase n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WS27_THATH)

HSP 1 Score: 55.5 bits (132), Expect = 1.490e-5
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            K++L MVDTCQA TLF+++ SP +L IGSS++GENSY+
Sbjct:    2 KELLIMVDTCQAATLFNQLHSPGVLAIGSSMKGENSYS 39
[Close]
BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Match: A0A7J8RYA1_GOSDV (Uncharacterized protein (Fragment) n=1 Tax=Gossypium davidsonii TaxID=34287 RepID=A0A7J8RYA1_GOSDV)

HSP 1 Score: 55.8 bits (133), Expect = 1.690e-5
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  449 KQVLFMVDTCQATTLFDEITSPEMLCIGSSVRGENSYA 562
            K++L MVDTCQA TLF+++ SP +L IGSS++GENSY+
Sbjct:  211 KELLIMVDTCQAATLFNQLQSPGVLAIGSSMKGENSYS 248
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP3_ECTSI6.890e-976.92Putative GPI-anchor transamidase n=2 Tax=Ectocarpu... [more]
A0A6B2LD54_9EUKA4.220e-664.86Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A446IKT8_TRITD5.080e-663.16Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
F0WEL5_9STRA6.850e-656.36GPIanchor transamidase putative n=1 Tax=Albugo lai... [more]
A0A2P2JFN2_RHIMU8.590e-665.79GPI-anchor transamidase family protein n=1 Tax=Rhi... [more]
UPI000848B5851.260e-565.79LOW QUALITY PROTEIN: putative GPI-anchor transamid... [more]
A0A7S1UWN3_9STRA1.410e-559.09Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A453NS10_AEGTS1.470e-563.16Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A7J6WS27_THATH1.490e-563.16Gpi-anchor transamidase n=1 Tax=Thalictrum thalict... [more]
A0A7J8RYA1_GOSDV1.690e-563.16Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:6795..7645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size852
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.4956422-CDS-A-nodosum_M_contig1031:6794..72951680866398.4956422-CDS-A-nodosum_M_contig1031:6794..7295Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 6795..7295 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.509298-UTR-A-nodosum_M_contig1031:7295..76451680866398.509298-UTR-A-nodosum_M_contig1031:7295..7645Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 7296..7645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.5.1prot_A-nodosum_M_contig1031.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 6795..7295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.5.1

>prot_A-nodosum_M_contig1031.5.1 ID=prot_A-nodosum_M_contig1031.5.1|Name=mRNA_A-nodosum_M_contig1031.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=167bp
QIPKILCTRSILYTIYWYLSISIAGRSCQRRQTTRFGGSSVRRYRQPLTA
LPFLLASRSCSRATIFCRETPGAGETGLKNRLHLSHSILPSTVAQVASQG
RRRRSHPAPSGHPYNFYRHPSFYPVARGRGISVLPTSGWGDARPCLCGKK
TSAIHGGHLPGHDAVR*
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mRNA from alignment at A-nodosum_M_contig1031:6795..7645+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.5.1 ID=mRNA_A-nodosum_M_contig1031.5.1|Name=mRNA_A-nodosum_M_contig1031.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=851bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:6795..7645+ (Ascophyllum nodosum dioecious)
CAGATACCAAAAATATTATGTACACGTAGTATACTATATACTATATACTG
GTACTTGTCAATATCAATAGCAGGTCGATCTTGTCAACGGAGGCAGACAA
CGAGATTTGGTGGGTCAAGTGTTCGAAGATATAGACAGCCGCTCACCGCG
CTCCCTTTCCTTTTGGCTTCGCGCTCTTGTTCCCGAGCGACTATTTTTTG
TAGAGAAACACCTGGCGCAGGAGAGACCGGGCTGAAAAATCGACTGCATC
TCTCGCATTCGATTCTTCCCTCTACAGTTGCGCAGGTAGCTTCGCAGGGC
CGCCGAAGGCGATCACATCCCGCGCCCTCAGGTCACCCCTACAACTTTTA
CCGTCATCCTTCGTTCTATCCCGTTGCCCGCGGGCGTGGGATCTCGGTGT
TGCCCACCTCGGGATGGGGCGATGCCCGCCCATGTTTGTGTGGTAAAAAA
ACAAGTGCTATTCATGGTGGACACCTGCCAGGCCACGACGCTGTTCGATG
AGATCACCTCGCCCGAGATGTTGTGCATCGGCAGCAGCGTCCGCGGGGAA
AACTCTTACGCGAAGGGGGTGAGAAGACCGCAATAAACTCACCACCCGAG
TTTTCCTGTTTTTTTTTGGGTGTTTTTGTGTGTGTGTATGTTTGATATTT
GTTGTTTTTTGTGATTTGTGCTGAGGCGGGCACCGACTCTCCTGCCGTGG
TCAGAACGAAACGAGCTCGAGAAAGGAAAAACCTCGTTGGCGAGGAGTGA
GAGGTATAACATCCCAAAGCGTTATCTACCGTGCTCTCGAAGAACTCAAA
GTGTCCATTGTGTTGACTCGACGCAAGGAGGGCCTCTTCTCTAATTTGAG
C
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:6795..7645+

>mRNA_A-nodosum_M_contig1031.5.1 ID=mRNA_A-nodosum_M_contig1031.5.1|Name=mRNA_A-nodosum_M_contig1031.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=501bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:6795..7645+ (Ascophyllum nodosum dioecious)
CAGATACCAAAAATATTATGTACACGTAGTATACTATATACTATATACTG
GTACTTGTCAATATCAATAGCAGGTCGATCTTGTCAACGGAGGCAGACAA
CGAGATTTGGTGGGTCAAGTGTTCGAAGATATAGACAGCCGCTCACCGCG
CTCCCTTTCCTTTTGGCTTCGCGCTCTTGTTCCCGAGCGACTATTTTTTG
TAGAGAAACACCTGGCGCAGGAGAGACCGGGCTGAAAAATCGACTGCATC
TCTCGCATTCGATTCTTCCCTCTACAGTTGCGCAGGTAGCTTCGCAGGGC
CGCCGAAGGCGATCACATCCCGCGCCCTCAGGTCACCCCTACAACTTTTA
CCGTCATCCTTCGTTCTATCCCGTTGCCCGCGGGCGTGGGATCTCGGTGT
TGCCCACCTCGGGATGGGGCGATGCCCGCCCATGTTTGTGTGGTAAAAAA
ACAAGTGCTATTCATGGTGGACACCTGCCAGGCCACGACGCTGTTCGATG
A
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