mRNA_A-nodosum_M_contig1031.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.4.1
Unique NamemRNA_A-nodosum_M_contig1031.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: D7FTP3_ECTSI (Putative GPI-anchor transamidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP3_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 6.190e-17
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 2 
Query:    2 MPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGRRLAWRAF 127
            MPCNARNPFP GVYNSKDHELNLYEGDVEVDYRG  ++  +F
Sbjct:  111 MPCNARNPFPGGVYNSKDHELNLYEGDVEVDYRGEEVSVESF 152
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: A0A0L0VK37_9BASI (Uncharacterized protein n=2 Tax=Puccinia striiformis TaxID=27350 RepID=A0A0L0VK37_9BASI)

HSP 1 Score: 62.4 bits (150), Expect = 9.410e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +GEEVSVE+F+RLLTGR + GTP SK L TDE SN+L+YM
Sbjct:   33 RGEEVSVENFIRLLTGRVVEGTPRSKRLMTDERSNILVYM 72
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: A0A7S2V326_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V326_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.000e-9
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYMN 219
            +G +V+VE+FLRLLTGRT PG P SK+L TDEHSN+LI+M+
Sbjct:  111 RGTDVTVENFLRLLTGRTKPGLPFSKLLNTDEHSNILIFMS 151
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: UPI0020080FF5 (hypothetical protein n=1 Tax=Puccinia striiformis f. sp. tritici TaxID=168172 RepID=UPI0020080FF5)

HSP 1 Score: 62.4 bits (150), Expect = 1.110e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +GEEVSVE+F+RLLTGR + GTP SK L TDE SN+L+YM
Sbjct:  101 RGEEVSVENFIRLLTGRVVEGTPRSKRLMTDERSNILVYM 140
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: A0A0L6VGR5_9BASI (Uncharacterized protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VGR5_9BASI)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +GEEVSVE+F+RLLTGR + GTP SK L TDE SN+L+YM
Sbjct:   76 RGEEVSVENFIRLLTGRVVEGTPRSKRLMTDERSNILVYM 115
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: A0A183KWB0_9TREM (GPI-anchor transamidase n=3 Tax=Schistosoma TaxID=6181 RepID=A0A183KWB0_9TREM)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-9
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +G EV+VE+F+R+LTGR  P TP SK L TDEHSN+LIYM
Sbjct:   38 RGYEVTVENFIRILTGRLPPSTPTSKRLNTDEHSNILIYM 77
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: A0A6A7G831_9CRUS (Phosphatidylinositol glycan (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G831_9CRUS)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-9
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYMN 219
            +G + SVE+FLRL+TGR LP TP SK LATD HSN+LIYM+
Sbjct:  109 RGTDCSVENFLRLITGRHLPNTPASKRLATDAHSNILIYMS 149
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: A0A899FZ46_9ASCO (Uncharacterized protein n=1 Tax=Pneumocystis wakefieldiae TaxID=38082 RepID=A0A899FZ46_9ASCO)

HSP 1 Score: 62.0 bits (149), Expect = 1.570e-9
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +G EV+VE+F+RLLTGR LPGTP SK L TD+ SN+L+YM
Sbjct:  116 RGYEVTVENFIRLLTGRVLPGTPRSKQLLTDDRSNILVYM 155
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BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: E3JXE4_PUCGT (Uncharacterized protein n=1 Tax=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) TaxID=418459 RepID=E3JXE4_PUCGT)

HSP 1 Score: 61.6 bits (148), Expect = 1.640e-9
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +GEEVSVE+F+RLLTGR   GTP SK L TDE SN+L+YM
Sbjct:  117 RGEEVSVENFIRLLTGRVAEGTPRSKRLMTDERSNILVYM 156
[Close]
BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Match: Q5DGI1_SCHJA (Uncharacterized protein n=1 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5DGI1_SCHJA)

HSP 1 Score: 59.7 bits (143), Expect = 1.770e-9
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   97 QGEEVSVESFLRLLTGRTLPGTPPSKMLATDEHSNVLIYM 216
            +G EV+VE+F+R+LTGR  P TP SK L TDEHSN+LIYM
Sbjct:  107 RGYEVTVENFIRVLTGRLPPSTPTSKRLNTDEHSNILIYM 146
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP3_ECTSI6.190e-1780.95Putative GPI-anchor transamidase n=2 Tax=Ectocarpu... [more]
A0A0L0VK37_9BASI9.410e-1070.00Uncharacterized protein n=2 Tax=Puccinia striiform... [more]
A0A7S2V326_9STRA1.000e-968.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0020080FF51.110e-970.00hypothetical protein n=1 Tax=Puccinia striiformis ... [more]
A0A0L6VGR5_9BASI1.150e-970.00Uncharacterized protein n=1 Tax=Puccinia sorghi Ta... [more]
A0A183KWB0_9TREM1.360e-967.50GPI-anchor transamidase n=3 Tax=Schistosoma TaxID=... [more]
A0A6A7G831_9CRUS1.560e-968.29Phosphatidylinositol glycan (Fragment) n=1 Tax=Hir... [more]
A0A899FZ46_9ASCO1.570e-967.50Uncharacterized protein n=1 Tax=Pneumocystis wakef... [more]
E3JXE4_PUCGT1.640e-970.00Uncharacterized protein n=1 Tax=Puccinia graminis ... [more]
Q5DGI1_SCHJA1.770e-967.50Uncharacterized protein n=1 Tax=Schistosoma japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:5642..6568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTP3
Preferred namePIGK
PFAMsPeptidase_C13
Model size222
Max annot lvl2759|Eukaryota
KEGG koko:K05290
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003756,GO:0003824,GO:0003923,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006508,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016255,GO:0016787,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0033036,GO:0034394,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051179,GO:0051641,GO:0070011,GO:0070727,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509
Exons3
Evalue1.46e-17
EggNOG OGsCOG5206@1|root,KOG1349@2759|Eukaryota
DescriptionGPI-anchor transamidase activity
Cds size219
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.8283746-CDS-A-nodosum_M_contig1031:5641..57401680866398.8283746-CDS-A-nodosum_M_contig1031:5641..5740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 5642..5740 +
1680866398.9054298-CDS-A-nodosum_M_contig1031:6186..62611680866398.9054298-CDS-A-nodosum_M_contig1031:6186..6261Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 6187..6261 +
1680866398.9208505-CDS-A-nodosum_M_contig1031:6522..65671680866398.9208505-CDS-A-nodosum_M_contig1031:6522..6567Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 6523..6567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.4.1prot_A-nodosum_M_contig1031.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 5642..6567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.4.1

>prot_A-nodosum_M_contig1031.4.1 ID=prot_A-nodosum_M_contig1031.4.1|Name=mRNA_A-nodosum_M_contig1031.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
HALQRTKPFPRRRLQQQGPRTESLRGGRGGRLQGEEVSVESFLRLLTGRT
LPGTPPSKMLATDEHSNVLIYMN
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mRNA from alignment at A-nodosum_M_contig1031:5642..6568+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.4.1 ID=mRNA_A-nodosum_M_contig1031.4.1|Name=mRNA_A-nodosum_M_contig1031.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=927bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:5642..6568+ (Ascophyllum nodosum dioecious)
CATGCCCTGCAACGCACGAAACCCTTTCCCCGCCGGCGTCTACAACAGCA
AGGACCACGAACTGAATCTCTACGAGGGGGACGTGGAGGTCGACTACAGG
TGCTGGACGCTTGAGCGCGCGCGTGCGCGTGCCCTTCGCAGACTAGAAAA
AGGTCGCGCGTTTTTGACCACTCGCCTCGCGCGCGTATCGGGACTTAACG
ATATCTTGCGGTCTGTAGCTTCGTACCAGTGCCTTGCCTCAAAGAGCTAA
ATAATATTTGCCAATTGCCTCGTACGGTCGCCAAAAAATGGCAAGACAGC
TGGGCATGTGTCAAGGTTGCTCGCACTGGCGACCTCCCGCGCGTCTAGGC
GAGCCAATCCATCTAAGGCCGCCGTTACGCGCTCTGTTTGTCCCCACCAC
AGTCCACTCCAAATAGGGCACGCAGCGTAAAGTACCGTACACTCCGGAGT
GCTATGAAAGGGACACCAGATCAGGCTGACTTACAACAATCTGTATACCT
ACATGTGTTCTCTTGCACTTTATACCGCTTCTTTATTTCTTCCAGGGGGA
GGAGGTTAGCGTGGAGAGCTTTTTGAGGCTGCTCACGGGAAGGACGCTGC
CAGGAACACCCCCTTCAAAGGTCGGTACGTGTTTCTGACACCTCACTTAC
GCCTCATTAAAACGTCAGAAACCTCTAACCTCTCACGGGCGCACCCAGTT
TCCCTGTCCGTTCGTTTCATTCTACAGTCACCGCCGCCCCCTTTTCTCTA
CTCATGGCGCTTGCTGGTGATGTTGATGTTGCCTATTTCTAGTTCTTCGC
ATCTCCGAGGTAATAGAATCCGCCAGATCTCTGGTCGAATATGCCTcCCC
CCCCCTTCCCCCCCGATCCTTTACCAATCAGATGCTCGCGACGGACGAGC
ACAGCAACGTGCTCATCTACATGAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:5642..6568+

>mRNA_A-nodosum_M_contig1031.4.1 ID=mRNA_A-nodosum_M_contig1031.4.1|Name=mRNA_A-nodosum_M_contig1031.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:5642..6568+ (Ascophyllum nodosum dioecious)
CATGCCCTGCAACGCACGAAACCCTTTCCCCGCCGGCGTCTACAACAGCA
AGGACCACGAACTGAATCTCTACGAGGGGGACGTGGAGGTCGACTACAGG
GGGAGGAGGTTAGCGTGGAGAGCTTTTTGAGGCTGCTCACGGGAAGGACG
CTGCCAGGAACACCCCCTTCAAAGATGCTCGCGACGGACGAGCACAGCAA
CGTGCTCATCTACATGAAT
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