mRNA_A-nodosum_M_contig1031.28.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.28.1
Unique NamemRNA_A-nodosum_M_contig1031.28.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:93745..99161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps24331
PFAMsBromodomain,HAT_KAT11,ZZ,zf-TAZ
Model size1872
Max annot lvl2836|Bacillariophyta
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.04e-08
EggNOG OGsCOG5076@1|root,KOG1474@2759|Eukaryota,KOG1778@2759|Eukaryota,2XENY@2836|Bacillariophyta
Ec32 ortholog descriptionZinc finger, TAZ-type
Ec32 orthologEc-11_001290.1
EC2.3.1.48
DescriptionTAZ zinc finger, present in p300 and CBP
Cds size342
COG categoryK
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866399.3636227-CDS-A-nodosum_M_contig1031:93744..938221680866399.3636227-CDS-A-nodosum_M_contig1031:93744..93822Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 93745..93822 +
1680866399.3801675-CDS-A-nodosum_M_contig1031:97369..976331680866399.3801675-CDS-A-nodosum_M_contig1031:97369..97633Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 97370..97633 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866399.393709-UTR-A-nodosum_M_contig1031:97633..991611680866399.393709-UTR-A-nodosum_M_contig1031:97633..99161Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 97634..99161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.28.1prot_A-nodosum_M_contig1031.28.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 93745..97633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.28.1

>prot_A-nodosum_M_contig1031.28.1 ID=prot_A-nodosum_M_contig1031.28.1|Name=mRNA_A-nodosum_M_contig1031.28.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
CQVSPDCDEVKALWKHIAHCQDKACTRPHCESSRFVLKHYSRCKHRECPL
CGPVRAVIAKARRQRRDDSNGGEAQEGDGHEDSDEDMEDFEDHDAGGDND
NNVHDDDDDDDDL*
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mRNA from alignment at A-nodosum_M_contig1031:93745..99161+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.28.1 ID=mRNA_A-nodosum_M_contig1031.28.1|Name=mRNA_A-nodosum_M_contig1031.28.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5417bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:93745..99161+ (Ascophyllum nodosum dioecious)
TGTCAGGTGTCCCCGGACTGCGACGAGGTGAAAGCGCTGTGGAAACACAT
CGCTCACTGCCAGGACAAGGCTTGTACCGTGAGTGTTCCATTGTAGCAGT
TGTCCTATTTCTTCCAAAAAAATAGAATACTGTGCTTACGTTCTGTATCT
TATGGACTCGTACAGCAGTACTACTGTACCTGCTGCTAAATCCAACCGGA
GTATCATTCTGTACTTCGTACGAAGTTCAGTATAAATTATATTATACAAA
ATATAATTCGGTAAGGCGAGGGATTCCCCCGGTAGGGTAATTACGGCATA
AGCTAACAGCAGAACGTTTTTTCTGTTCGTTTTTCGAGAGTAAATAAAAG
TACGATACAGTCGAGAGCGAGAGGATTCTCCCGGCAGAGGTAACTGTGCG
GCACAGAGGAAGGCTACTTGTAATAGCGGAACGATTTTATAAACGATTTC
TGAATCTTTTCGCAAAAAAAATGTTCATATCTATGCCCCTCACTGCCTTG
GTAGACAGCAGTTATCAAGTATCGGGTGCACTACTTCACAACGGCTAACA
TCTAGATTTTATGTTCTCTTTTTTTCGTTGTTTAACATCCCCACCCAAAG
TCCTCCCTCGGCAACCTGCCGCCGGTCCCGCCCGTTCCATTTCTGTGATT
TTTTTTTGAGTGGGAAATCATATCCTCGAGTCTTACTTTTAAGGTACTCG
CAATCGTATACCTTACTCGTAGCCAATCTTACTTTACAGCTGGTCGACCC
CGGTAGCTCAGTAGGCACCTCGTAACCTTCTGACACGTTGGGACGTGAGT
TCGATCCCGGCAAACGGGATTTTTCTCACTAAGAACTAAAAAACCAAAAT
AAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTAGTACACAAAATTC
GACTTCACGGTCGACGAGGGAAAGGAATGGCTGAATCCTTCTCGCGACAA
AAATCAAGGCACGCACCGCAGAAGGAAGGTGGATTAAAAATCCTGTGTGA
CCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGATGTCCA
GAATGGATGGGAAGAAAACACACACACACTTACTGTACTTACTTTACACT
TACTGTATGTACAATACGTTTATTTGGTAAATTATCGTACTGTAAAATTT
GTAAAATAGGAACCGTACGTCTCATATATTATTTGCTCCGGACAACGGTA
TTCATTTTTATTTTTATCTTTCAAGTATATTGCTGTATAATTAATCTATT
TCTAACAACAGTTGACAACGAGAGATTATTACTAGACTACAGTATCACTA
CACTATTGATAGCCATTGTATACAACGCTTCCGATACTTTAAACAGTGGG
TGTGGGAAAAGATAGGCGCACATTGATTGGTCCATGGTGATAACTTCAAA
GGCAGCGCCCGTTACTGGAACTACCTTGAGGACTACTGGCCCTGTGCCGG
TGGGCTTTCGGCAGTGAACGCCTTCGGTACGCAGTTGCGTGACCCGATAA
AGTCGGGACTGACCCGATGGCGTGTGGTGGTTTAAATAAATGAATGGACG
CTGCCGCGGAAATGGGGAGGAATCCCGTAAGTTAACAACAGATTCAGCCT
GAGTGTTGAGAATGAGCTGGCTGACGCGGGGCGGGACGATCGAACCCGTA
TCGGGAGACCAATTTTCATACGCGAACAGATATTCCTTCTCTCTGTTCAG
CTGACCACGAGCAGGATTGGCAACCTTACCAGGTCCATCTATACTCTGCT
ATAAGTGATGACCATGTTGTTGCTGTTGTCATTCCATTTATTCTGGACGT
CAGACTTGTGGACGCATCAGGCAGGGTCACACAGGAGGAAAGTCACACAG
GATTTCTCCATTTTCCTTCCGCGGTGCTAGCCTTAATTTTTCTCGCGAGA
AGGATTCAGCCGTCCCTTTCCCTCGTCGACCGTGAAGTTGAATTTTGTGT
ACCCACGAATTAATCGTTCTCGACTGGTTTGGCATGATTTTTTATTCATT
TAGTTTTTCTACGAGGAAAAATCTCAGTTAGTGTGTGACTGCACCGATAT
TCGAACTCACGTCCCAACGTCAGAAGGTTTCGAGGTTACCAACTCAACCA
CCTGGGGGACCGTTAATCATCCTCGCCCGAGTGAAGCAGTCGTTGATAAC
CTCGCGATCGCAAGTGTGCCGATTCTTGAATTCGAATCTTGACGTCATGT
TTTTTTTAAATTCTGGCTTCCGTATTGTTAGCAGAAAGCGTGAGAAAATA
ATTTGAGTACAGAAGTAAAGTTAAATTGTTCATTATAATACTTGACGAGG
TGTAATAGTGCTAAACTAGCTTCGCGAAAACAGTCGTAAGCGAGAATCTG
GGAGAGAAAATAAATCTAGTAACGACAGCCAGGATGGCACGTTACAGTAT
TAATATAGGTGGGATTCGTTACCTACTATATACTAATAATACGTTCGGGC
CTATCGGTCGCAAGTAAGGTATAAGAGTACAAAGCCCCCCCACGAAACAA
AGATATACAGGTATGAGTAAGTTTGGTATCTGTAGTAGTAGTGGGTAGCT
GCGGTGTACCACCATGAAATTAATGCATGCGTTATTCCTACTGGTACCGG
CCTTCTTACATGACTCATCCTCGAGCCTCTACCTCTAACCTCTGCCTGCT
CAAAACCTCCCATGAAGATACTTGTAGACTCAATCTTCCCTTTCCACTTT
TTTTCGTTTCATCTTTCACATGAGATCATTCTGGTACTGTACTGTATAGC
TGTGCTAAATCATAGTCCCCCCTCACACTACTCCTCCTCGTGCCTCCTAT
TTAATGCTTCGTACCTCTGCCACTTCCGTTTATACTGTATCACCAAGATA
CTTGTAGATTCATTTTGCACTTTCTTAGTCTGTCGTATTTAATAGTTAGA
TCCACTTGATAATTATCTAAAGTAGATTATGTACCCTTCCCTCTCAATCG
TAATATACTATTATTAGCGTTGATACCCGTGCGACTATTAATATGACTAT
TTTACAATCTACTCCAATTCACCAATACTTTTACGATCGACCTCCAATCC
GACGAAACGTAACTGAGTCAAAGTGTATCCAGGTAGGTTCATGGTGTGCT
CTTGTCTTTGTTTTGGTGTCCCTGCATGGCGATTAATGTCAAGTGTACAG
TATAACGGTGGTTTTCTTCCTGATAATACACTGTTGACCCCATGCTACGA
CATCGGGGAAGCCATCTATTTCCATGAAGTTATTTTGTCTTTACAGCCAA
TGTTCCCACCTACTAACTAAACGTTTTGACATTTCCCCCCCCTGACTGGG
TGGAGATGCTCTATTATATTGATAATTATATGATACTAATATATGGTTTA
GATGCGTTCTTTTCTTTAAACTATTATTAGTACTGTCAGTAGATGGCAGC
GGAGGAGTGCAGGAGGGTCACATACTTGCACAGGTATGTACTTTTTGTGT
TCTTTCGTGTTTGATAAACCACCTGTACAGCACTTTACGTAATTTACATG
ATTACTCCACTTATACTAAAGTAACCATGCTTTTGGAATCTAAGCCACGG
TCTTGTTGTGCCTCCGTCCGTCTCTGGCCTGTGTACCTTGTGTGTCTGTG
TGTCCGCGTGTCCGCGTGTCCACAGAGACCGCACTGCGAATCCTCCCGCT
TCGTCCTGAAACACTACAGTCGTTGCAAGCATCGCGAGTGTCCTCTGTGT
GGCCCCGTGAGGGCAGTTATCGCCAAGGCGCGCCGGCAAAGGAGGGACGA
CTCCAACGGGGGGGAGGCGCAGGAGGGTGATGGTCACGAGGATAGCGACG
AGGACATGGAAGACTTCGAAGATCACGATGCTGGTGGTGATAATGATAAC
AACGTTCACGATGATGATGACGATGACGATGACTTGTAGAGTGCGAGCGT
AGCTCTAGCCCAACTGCTTCTTTTGTCGGCGTGGTATTTTTAACGTTCGG
ACCAAATATAGCGATAAAAATGTATACTAATAATGTAATAACAGATGGCG
ACGGCGATGAGCTGTGGGATACCAGCATGACCCTAATTATACAGTATAAT
TACAAGGATACTGATTTGGTTGGAAGCTCTGGGTTATGACTCCCCCTCAT
CCTGTTAATTTACTATCGGCGGGCGGTTTTTAAGTCCGGTATACAAGCAC
GAATACCAGTATAGGTGTAGAGCTTATAGCTCATGTATAATAATACACCT
GGTTTAGAGCGTCAGCTCCACCTGTAGCTGTAGAGTAATATACTGTAGTC
ATGATGCGTGTACCATATATTATGTTAATATGTTGACACGATTTTATTGA
GAGATATGGATTTGATTTGATCTGGAGTTCGTCCTGTCGGGATATATTAT
TACCAAATGACGGTTTTTACGTTTGTTTGGATTGGAAAAAGTGCAAGTCT
TCTGCCTCGTGTCTAATGGCAACGGCCAACGGGGGTTTCCACAACTTGCT
TGGCTTTTTGTGTAACTCACTGGTGTTCACGGGTACGAAGTAGAAGATCT
GGAGCTACGTTAGAGCGGTAGCTACCACGAGTCTACGGAAGATTTCTTTC
TTTTATTTATTCTTGTTTTGTGATTCGTGGCTTTGTTTTCAGCAACAAAT
GCAGTAGTAGCTGCTACAGTTGGTACTGCCTTTCAGGTACATAAACCAGG
TACGTTAAAAAGTTCGGTAGGAAAGCAGTTGTCCCTTTGAGGTCTACCGA
GTACGAGCATATGTTCGAGTTTATTAGCGTGCATTTTAATTGCCGCGGAC
AAGGCTCGATTTGTTTCGAGACTCGCCAACGAACACGGTGTCCATGCTCG
TATGTGTACATTCAGTAGATCGGATGCGGATAGATGCTGGGGGCATTTTC
TGTTGCGCCGTATCAGTCTTTAGGGGTCTGTTCACATAATAACAGACAGT
AGTTGTACAGGAAGTACACTTTTCTCCCTCCGTCGTGTGGTGGTGTCTTC
ATTGTTTCTCAGACGGTTTTGTCGTATCACCACGTATGAATTCTACTGTA
GTATTCGGCATGGTTTGAAAGCGTTTCGGGGAGAGATAATCTGAAATCTG
ACGTCGATTACATGAAGGGGAGTATTATACTATTAAATATGAAGATTCTT
TGTCGCTATAGCCAATGTTCCTATCTAAACCTTTTGACAATTTTTTCCCC
AAGGGTGGATGCGCAGAAGATTCGGATGCGTTCAGATTTTCTTTAAAAAC
CATACGTGACGAGGATATAATGCCGCTTTACCAATTAGGATCGATGCCCT
ATTGATAGCATAGCACGGGCGAGGTCACGGTCGAGGTCTCTTTCGTCGAC
TGAATGAAGGAGATAATAACCAAACAGGAAAAAATGCATGCGTTTTCGTG
GGGAAATTTACTACTTTCTTCAATGCTCCGCCTGACGTCCCTGAATCGAT
GTTGAATGCAACTGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:93745..99161+

>mRNA_A-nodosum_M_contig1031.28.1 ID=mRNA_A-nodosum_M_contig1031.28.1|Name=mRNA_A-nodosum_M_contig1031.28.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:93745..99161+ (Ascophyllum nodosum dioecious)
TGTCAGGTGTCCCCGGACTGCGACGAGGTGAAAGCGCTGTGGAAACACAT
CGCTCACTGCCAGGACAAGGCTTGTACCAGACCGCACTGCGAATCCTCCC
GCTTCGTCCTGAAACACTACAGTCGTTGCAAGCATCGCGAGTGTCCTCTG
TGTGGCCCCGTGAGGGCAGTTATCGCCAAGGCGCGCCGGCAAAGGAGGGA
CGACTCCAACGGGGGGGAGGCGCAGGAGGGTGATGGTCACGAGGATAGCG
ACGAGGACATGGAAGACTTCGAAGATCACGATGCTGGTGGTGATAATGAT
AACAACGTTCACGATGATGATGACGATGACGATGACTTGTAG
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