mRNA_A-nodosum_M_contig1031.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.2.1
Unique NamemRNA_A-nodosum_M_contig1031.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: D7FTP3_ECTSI (Putative GPI-anchor transamidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP3_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 6.960e-8
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   67 SAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            +  VCTSRFWFNYR VANTLSVYHTVRRL
Sbjct:   68 AVLVCTSRFWFNYRHVANTLSVYHTVRRL 96
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: A0A507DVH8_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DVH8_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.330e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   28 EGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            EGF  +       +  VCTSRFWFNYR +ANTLS+YHTV+RL
Sbjct:   70 EGFFSQSGHTNNWAVLVCTSRFWFNYRHIANTLSIYHTVKRL 111
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: A0A507EFV1_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EFV1_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.810e-7
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:   28 EGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            EGF          +  VCTSRFWFNYR +ANTLS+YHTV+RL
Sbjct:   61 EGFFASSGHTNNWAVLVCTSRFWFNYRHIANTLSIYHTVKRL 102
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: A0A4P9X3E7_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X3E7_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-7
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   67 SAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            +  VCTSRFWFNYR VANTLS+YHTV+RL
Sbjct:    6 AVLVCTSRFWFNYRHVANTLSIYHTVKRL 34
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: A0A8H4BG82_MUCCL (Peptidase C13 family-domain-containing protein n=1 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A8H4BG82_MUCCL)

HSP 1 Score: 54.3 bits (129), Expect = 2.880e-7
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   13 DQHVREGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            DQ   EGF  +       +  VCTSRFWFNYR VANTLS+Y TV+RL
Sbjct:   25 DQEQVEGFFSQSGHTNNWAVLVCTSRFWFNYRHVANTLSMYRTVKRL 71
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: S2K0B9_MUCC1 (Phosphatidylinositol glycan, class K n=3 Tax=Mucor TaxID=4830 RepID=S2K0B9_MUCC1)

HSP 1 Score: 54.3 bits (129), Expect = 3.370e-7
Identity = 27/47 (57.45%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   13 DQHVREGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            DQ   EGF  +       +  VCTSRFWFNYR VANTLS+Y TV+RL
Sbjct:   25 DQEQVEGFFSQSGHTNNWAVLVCTSRFWFNYRHVANTLSMYRTVKRL 71
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: Q4T1X6_TETNG (GPI-anchor transamidase (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4T1X6_TETNG)

HSP 1 Score: 50.4 bits (119), Expect = 3.570e-7
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   67 SAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            +  VCTSRFWFNYR VANTLSVY +V+RL
Sbjct:   18 AVLVCTSRFWFNYRHVANTLSVYRSVKRL 46
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BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: A0A7S1G480_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G480_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.590e-7
Identity = 23/29 (79.31%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:   67 SAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            +  VCTSRFWFNYR VANTLS+YHTV+RL
Sbjct:   81 AVLVCTSRFWFNYRHVANTLSMYHTVKRL 109
[Close]
BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: S7PK90_MYOBR (GPI-anchor transamidase n=2 Tax=Myotis brandtii TaxID=109478 RepID=S7PK90_MYOBR)

HSP 1 Score: 53.9 bits (128), Expect = 4.640e-7
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 AGFDQHVREGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            +GF +   + FR   T +   +  VCTSRFWFNYR VANTLSVY +V+RL
Sbjct:   91 SGFKEQAEQFFRSGHTNN--WAVLVCTSRFWFNYRHVANTLSVYRSVKRL 138
[Close]
BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Match: A0A367JST4_RHIAZ (Glycosylphosphatidylinositol anchor biosynthesis n=6 Tax=Rhizopus TaxID=4842 RepID=A0A367JST4_RHIAZ)

HSP 1 Score: 53.5 bits (127), Expect = 6.130e-7
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   16 QHVREGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRRL 153
            Q   EGF  +       +  VCTSRFWFNYR VANTLS+Y TV+RL
Sbjct:   21 QDAIEGFFTQSGHTNNWAVLVCTSRFWFNYRHVANTLSIYRTVKRL 66
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP3_ECTSI6.960e-886.21Putative GPI-anchor transamidase n=2 Tax=Ectocarpu... [more]
A0A507DVH8_9FUNG1.330e-759.52Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A507EFV1_9FUNG1.810e-759.52Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A4P9X3E7_9FUNG2.090e-779.31Uncharacterized protein (Fragment) n=1 Tax=Cauloch... [more]
A0A8H4BG82_MUCCL2.880e-757.45Peptidase C13 family-domain-containing protein n=1... [more]
S2K0B9_MUCC13.370e-757.45Phosphatidylinositol glycan, class K n=3 Tax=Mucor... [more]
Q4T1X6_TETNG3.570e-775.86GPI-anchor transamidase (Fragment) n=1 Tax=Tetraod... [more]
A0A7S1G480_9STRA4.590e-779.31Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
S7PK90_MYOBR4.640e-754.00GPI-anchor transamidase n=2 Tax=Myotis brandtii Ta... [more]
A0A367JST4_RHIAZ6.130e-756.52Glycosylphosphatidylinositol anchor biosynthesis n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:3316..5601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FTP3
Preferred namePIGK
PFAMsPeptidase_C13
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K05290
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003756,GO:0003824,GO:0003923,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006508,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016255,GO:0016787,GO:0016853,GO:0016860,GO:0016864,GO:0019538,GO:0019637,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032991,GO:0033036,GO:0034394,GO:0034613,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042765,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051179,GO:0051641,GO:0070011,GO:0070727,GO:0071704,GO:0090407,GO:0098796,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1903509
Exons2
Evalue1.14e-08
EggNOG OGsCOG5206@1|root,KOG1349@2759|Eukaryota
DescriptionGPI-anchor transamidase activity
Cds size153
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.7303355-CDS-A-nodosum_M_contig1031:3315..33901680866398.7303355-CDS-A-nodosum_M_contig1031:3315..3390Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 3316..3390 +
1680866398.79799-CDS-A-nodosum_M_contig1031:5522..56001680866398.79799-CDS-A-nodosum_M_contig1031:5522..5600Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 5523..5600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.2.1prot_A-nodosum_M_contig1031.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 3316..5600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.2.1

>prot_A-nodosum_M_contig1031.2.1 ID=prot_A-nodosum_M_contig1031.2.1|Name=mRNA_A-nodosum_M_contig1031.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
LAGFDQHVREGFRWKLTRDRITSAFVCTSRFWFNYRLVANTLSVYHTVRR
L
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mRNA from alignment at A-nodosum_M_contig1031:3316..5601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.2.1 ID=mRNA_A-nodosum_M_contig1031.2.1|Name=mRNA_A-nodosum_M_contig1031.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2286bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:3316..5601+ (Ascophyllum nodosum dioecious)
TTGGCGGGGTTTGATCAGCATGTGCGGGAGGGCTTTCGGTGGAAGCTTAC
GAGAGACCGCATTACGTCAGCGTTCGTGAGTTGCTGCTGTACATTATTTA
CACCATTTACATTTTTTCTCTCAAAACTACACACTCTTCTTTTTCTTTTT
GCAGCTACTAACATTATTTCCGTAAAGCACGACTCAAAACGGGCGACGCT
CACACTTATAGCATAGCAGGTGATAGTTCCATTGCACAATACTTGTAATA
GTGTAATAAAAATAGTATGTGGCAAACAGCACGGGTGCATTTGTTTTCGA
TGCCTGACTGCGCCCTGGTTGAGCCTGTCGGCCATTCGGCGCTCGAAAAA
CCATTTCCCATTCGAGCCCTGGTAGAGCACGCGCTATCGTGTTGTCTGTC
GAGCGATCGATCGGTACTATCGGTACTTGGAGTACTCTTGTAGCTCCAAG
CCGAGCGAACTGTCGCCCCTCCCCCCGCCAACTATTACAAGCCCGCGATG
TTCCGGTCTTAACGCAGGTGGACCTCCTAATACTGAACACCGTCCACGAG
AGAGGCACGGCGCTGCAGGCACCGCCTGAGGCCGGGTGAGCGTGACTGCT
GCTCAAGGCCAAACACAAACTTGACGTCTCTCGGTGAAGGTTGAGAGACC
TATCGTCCAGAGCTGCCAAATATTAGACGCACCAGTAGAGTAGAGCGTGT
ACTGTGTAGCGTGTATTGTTGGGTGTGCCTTTTTGAATAGATAGGGCGGG
CCCGTCGCTACTGCTGTTTCCGTCCGCATTTATCCATCAATCGATGCATC
CCTCCACCCACCCTGGAACTCCCACCCCCATCCCCCCCCCCGCGCCCGCC
AAAAAAAGGTTCCAGCAGGAGGATGTTACGGGTAATACATTATTAACAGT
AAAGTTCTAGGTGCGTGTCCATACTGTACCCCCTGAAAACCCCACTAATG
TGTACAGTACATTTTTATAGTTTCACCGGAACCGGTTAGATGGATATTGT
CTTTTTCTAGACTGCAGGCCTGACAGGTCAGTATTTCTAAAATTCAGAGA
ATTACGTGCGACCGGCAGTTAATGGCGCGAGTTTATGGTTCAAGCCAATC
ACAGGTGTTTGTTTGGCCAACCCCTCCCTCAAGGTTCCCAGAGCTTTATT
TATATAATGGAACTCCCGTGGGTCGTGTGTGGTCATTTGACGACACTGTG
ATTGTCTTAGGATGAGGTTTGTGCTGTTGATGATAAAATATCTGCTTCTC
TGGTAAATGCTTTTAACCCGGGAATCATTCGCGCTCGCAGTATGTTATGT
CTTCTATCTCGGGAAGAAAGACAGGCAGACAGACTGACGGAGTGTTGATA
TCTTGAGGTCATTCGTCACTCTTCCACTTGCGATCCGTACTATACTATAC
CATACTATACTACAGTATACTGACTGTACTAAATAGAGCTAGCTATAGCA
TAGGGTATTTCATTTCATTCTGGTTGCGCAGTGTGCATCAAAGTTGAACT
GTCGTGGGATTCGGGCAGCGAAACATGAGATAGTATGTATGTATGTATGT
ATGTATGTATTTATTAAATTGCAACAATGGCCCTGTGCCGGCAAAATGTC
GGCGGTAAACGCCATCGGTACGCACTAACGTGACCCGATAAACTATACTA
TAATAGGGATTGACCCGATGGTGGGTGACGGTATGTGTGGATGCCGTCGC
GGAAAGCCGGAGGAAGCACCAGATTGATGATTGATGATTGATGATTGATG
ATTGATGATTCAGCCTGAGTGGGGAGAATGAGCGGGCTAACGCAGGACGG
AACGGCCGAACTTGTCTTACGAGGCCATATTCTCAGGCGTGAACGGGGAC
AGGGAAAACGTATCTAGTATTTTCCCTGTTTAGCTGACCACGAGCAGGGT
TGGCAGCCACACCCGGTTGATCTGATCCATACTCTGCTGAAAGTGCTGAC
CATACATACATACAATCTACTGTTGTAGGGAGTTCGATTCGGAAAGCTCG
TGCATTCGCCCCCCATCCCCCTAAGACACAAAACAGTGGTCCACCAGATT
CATCGTAATTTACCGCTGTAGATAATCTGTAATCTTCGACCGCTTTTACA
GCATCTGTTACTATACAATCTTAAGAGCAGTGATACTACCGTGCCATTTT
CTGTCTTTTTTGTTTTTTTCTCATTGCATCAATGATCGATGATGACGGCG
GCGGCAGGTGTGCACCTCGCGCTTCTGGTTTAACTACCGCCTCGTAGCCA
ACACCCTCTCGGTCTACCACACCGTCCGACGCCTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:3316..5601+

>mRNA_A-nodosum_M_contig1031.2.1 ID=mRNA_A-nodosum_M_contig1031.2.1|Name=mRNA_A-nodosum_M_contig1031.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:3316..5601+ (Ascophyllum nodosum dioecious)
TTGGCGGGGTTTGATCAGCATGTGCGGGAGGGCTTTCGGTGGAAGCTTAC
GAGAGACCGCATTACGTCAGCGTTCGTGTGCACCTCGCGCTTCTGGTTTA
ACTACCGCCTCGTAGCCAACACCCTCTCGGTCTACCACACCGTCCGACGC
CTG
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