mRNA_A-nodosum_M_contig1031.17.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.17.1
Unique NamemRNA_A-nodosum_M_contig1031.17.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:42975..44612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size720
Hectar predicted targeting categoryother localisation
Exons2
Cds size720
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866398.3961074-CDS-A-nodosum_M_contig1031:42974..432561680866398.3961074-CDS-A-nodosum_M_contig1031:42974..43256Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 42975..43256 -
1680866398.4077628-CDS-A-nodosum_M_contig1031:44174..446121680866398.4077628-CDS-A-nodosum_M_contig1031:44174..44612Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 44175..44612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.17.1prot_A-nodosum_M_contig1031.17.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 42975..44612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.17.1

>prot_A-nodosum_M_contig1031.17.1 ID=prot_A-nodosum_M_contig1031.17.1|Name=mRNA_A-nodosum_M_contig1031.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=240bp
SAKPAAPASATNPFAVLGEGNTSSGNSPETQVTAEDSSTREHSSVTLTEP
PDSSNLEVEEGEVGSGDADIPDSVARALLDALQEKRMGNQLPAAMAPLAR
IRASQLQKCISDGTEPQETIIQAALDLIALGKGPSDPAALSDKVSMLETR
LDDVQATIASIIDAPTPPRKQHRGRSKSERPATQGRRENSTSRAKNNGKK
ASRTTRPITCTFQHCMRPTTHRTEDCLFKKLAEKIGSDP*
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mRNA from alignment at A-nodosum_M_contig1031:42975..44612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.17.1 ID=mRNA_A-nodosum_M_contig1031.17.1|Name=mRNA_A-nodosum_M_contig1031.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1638bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:42975..44612- (Ascophyllum nodosum dioecious)
TCGGCGAAGCCTGCGGCCCCAGCGTCAGCGACGAATCCCTTCGCTGTGCT
AGGCGAGGGCAATACATCCTCTGGAAATTCTCCGGAGACACAAGTGACTG
CAGAAGATAGCTCCACAAGAGAACATTCCTCAGTCACCTTGACTGAACCA
CCCGATTCCTCCAACTTGGAAGTAGAGGAAGGAGAGGTGGGATCCGGCGA
CGCGGACATCCCAGACAGCGTCGCCAGGGCGTTGTTAGACGCACTCCAGG
AGAAGCGGATGGGAAATCAACTCCCAGCCGCCATGGCTCCACTGGCTCGG
ATCCGAGCCTCTCAGCTGCAGAAGTGCATTTCGGACGGGACGGAGCCTCA
GGAAACGATCATCCAGGCGGCACTGGACCTGATTGCTTTGGGTAAAGGGC
CATCCGATCCGGCAGCCCTCTCCGATAAGGTGTCAATGGTAAGCCAGATG
CCTGATGTACAAACGAACGCGACCTTGCCTGCACAGGATAGCAGTAGCAC
TATTAACACTACCGCATGTGCAGAAGTGACCGCAAACCCGTTGTACCAAG
CGATCACCCCAGACACTCACTCCAACTCCACAGGGAATGTCAACCCCATG
GCACGTGTCCCAGATCCGACCTATATGGGTCATCATGCGAATTCTTTTAG
AATGTCTGCAAACGATGTACCTGAACAACTCGTTCTATATGGGACATCGG
AAGAAGATGTCCCAGCCATGTTAGCTCAATTCCGGAAACGTGTAGAGTTG
AAGGGTGACCTCCACGTCCCTCCATCAGAGATCGATAGTCGAGCTGTACG
TTTTCTGCCGCTACTATTAAAAAGTGTTGCTTTGGAAACTTATAGTCAAT
TGACCCTCGGCACACTGGAATGGAGATCGGAAAACACATTGTCCAATCTA
AGATTACATCGGATGGATATCACCCCCGTTGCGCCGCGTTCATGGAGCGA
TTGGGTAGAAGCGTTGACAGCGATGTTTGCGCCCCCAAACCTCTTGGCAA
ATTTGTGCCGAGACATCGCTACCCTGAGGCAACGCGATGAAAAACACCCG
GGAGAGAACGTTGATCAATACGCTCTCCGTATAAGTAGTCTGTTTACCAG
ACTATTAACTGAAGCAGCACGTACGCGACCCATCGAGAAATCGTCGCATA
CCTTTGCATGGGAAAGACTAAAAATAGCTGTATTCGAAAATGGATTGCTC
CCAGCGATAAGACTTGAACAGATACGAGAAGACCCTGCTCACTCGTTTGC
CGCAGCGAGAGATCGCGCCCGAAAACACGCATCAAATAACTTACATGGGG
TCAATGTTTCGAATTTGTCCTCGGTCGCGCGTACGTCTCCCGCTCTGAAA
ACTCAGTTGGAGACGCGCCTCGACGATGTGCAAGCTACTATAGCATCAAT
CATTGATGCACCAACCCCACCTCGGAAGCAGCACCGTGGCCGTTCCAAAT
CGGAACGTCCGGCTACCCAGGGTCGGAGAGAGAATAGTACGTCGAGAGCA
AAGAATAACGGGAAGAAGGCATCCCGTACGACGCGACCAATAACATGTAC
ATTCCAACACTGCATGCGACCGACCACCCACCGGACGGAGGACTGCCTGT
TCAAGAAATTGGCAGAAAAAATCGGTAGTGACCCTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:42975..44612-

>mRNA_A-nodosum_M_contig1031.17.1 ID=mRNA_A-nodosum_M_contig1031.17.1|Name=mRNA_A-nodosum_M_contig1031.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:42975..44612- (Ascophyllum nodosum dioecious)
TCGGCGAAGCCTGCGGCCCCAGCGTCAGCGACGAATCCCTTCGCTGTGCT
AGGCGAGGGCAATACATCCTCTGGAAATTCTCCGGAGACACAAGTGACTG
CAGAAGATAGCTCCACAAGAGAACATTCCTCAGTCACCTTGACTGAACCA
CCCGATTCCTCCAACTTGGAAGTAGAGGAAGGAGAGGTGGGATCCGGCGA
CGCGGACATCCCAGACAGCGTCGCCAGGGCGTTGTTAGACGCACTCCAGG
AGAAGCGGATGGGAAATCAACTCCCAGCCGCCATGGCTCCACTGGCTCGG
ATCCGAGCCTCTCAGCTGCAGAAGTGCATTTCGGACGGGACGGAGCCTCA
GGAAACGATCATCCAGGCGGCACTGGACCTGATTGCTTTGGGTAAAGGGC
CATCCGATCCGGCAGCCCTCTCCGATAAGGTGTCAATGTTGGAGACGCGC
CTCGACGATGTGCAAGCTACTATAGCATCAATCATTGATGCACCAACCCC
ACCTCGGAAGCAGCACCGTGGCCGTTCCAAATCGGAACGTCCGGCTACCC
AGGGTCGGAGAGAGAATAGTACGTCGAGAGCAAAGAATAACGGGAAGAAG
GCATCCCGTACGACGCGACCAATAACATGTACATTCCAACACTGCATGCG
ACCGACCACCCACCGGACGGAGGACTGCCTGTTCAAGAAATTGGCAGAAA
AAATCGGTAGTGACCCTTGA
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