mRNA_A-nodosum_M_contig103.33.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig103.33.1
Unique NamemRNA_A-nodosum_M_contig103.33.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A835Z5J0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J0_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.510e-51
Identity = 148/497 (29.78%), Postives = 202/497 (40.64%), Query Frame = 1
Query:  790 EKGWCKSGNDCRFTHGTSDKRKLVGDGVEGALGK--PATIREPCKFFAKGNCSRGNMCPFSHSSYSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGMLMVTKQDLLPLDGGDTDTEDSDLEDEP---------WEDPGSNEGSAYFFGAPGRFDTGSVGGGDGGVSSATSGKGHGSWRDIVQGSSELCEDPTVANDGKPLQVVDATVRALVSSAAADAGVDVEAKPSRDMARAARAAAAFSALNSALSSPRAGKRKVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERISDRFGILVGCRHSYCLKCIREWRG-----KSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSF 2232
            ++G C +  +CRF HG SD+R LVG    GA G   PA+I+  C++ A+G CS G+ CP+SHSSY ADEA RR  +       +      A P  +P+      +Q          ++K  +L    G ++ ++ +   E          WE P   +  AYF+GA G F                                       VA    P  V+                                                   R+VC FF+ G CR+G  CRN+H                                                     AL+  E+ +S  A+CG+C + +  RFG+L GC H++CL+CIR WR      ++  R CP C  PSHF+VPS  LV  P RK  LV RYKE+L+ IPC+HF  G  +CPFG SCFYAHL  DGS       R+R  A G++E   +V LSSF
Sbjct:   17 DRGKCVNDINCRFRHGPSDRRPLVGAAAAGAAGAAPPASIKVSCRYHAQGRCSNGSACPYSHSSYEADEAVRRRQVQQXXXXLQARARQSAMPQQRPLFGSRSEDQS--VAEATAQISKLTVL----GKSEAKEQETHQEKDSGRNGEVEWEFPSDED--AYFYGAAGTFAP------------------QXXXXXXXXXXXXXXXWSAVAVTNVPDNVLXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXREVCQFFLSGTCRYGVACRNAHSAAXXXXXXXX-----------------------------------------TALEAEERERSARAECGICYDPVQGRFGVLTGCDHAFCLECIRNWRAVGVREQAAVRACPLCRAPSHFIVPSARLVAHPARKAALVERYKETLARIPCRHFASG--DCPFGGSCFYAHLAADGSRAAPPQLRMRAGADGETEVHGDVQLSSF 426          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.430e-43
Identity = 157/479 (32.78%), Postives = 205/479 (42.80%), Query Frame = 1
Query:  790 EKGWCKSGNDCRFTHGTSDKRKLVGDGVEGALGKPATIR--------EPCKFFAKGNCSRGNMCPFSHSSYSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGMLMVT-KQDLLPLDGGDTDTEDSDLEDEPWEDPGSNEGSAYFFGAPGRFDTGSVGGGDGGVSSATSGKGHGSWRDIVQ--------GSSELCEDPTVANDGKPLQVVDATVRALVSSAAADAGVDVEAKPSRDMAR----------AARAAAAFSALNSALSSPRAGK------------RKVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGH------------EEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI------SDR-FGILVGCRHSYCLKCIREWRGKSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKES 2052
            EKG C+ G  CRFTHGTSD R+L  DG  G    P   R        EPC+FFAKG C RG  C F HS+  +D++        +   +RP     +S    P G  A  ++     RG  + T K+   P          +       +     EG     G  G   +   GG  GG   A   +   SW DIV         G +       +   G   +  D      ++ A      +   K  R+ AR          +A A  A + L+   + P  G             ++ C FF RG CR+G+ CR SH+      VE T    G               E+ G A   +  E+EG        G+D  A   AALDEAEK QS+ A+CG+CLE++       DR FGILV CRH YCL CIREWR KS    CPECG+ S  V+PS TLVTDP RK+ L    ++S
Sbjct:   18 EKGSCRYGASCRFTHGTSDSRELRADGAAGETQTPRQARPTASTSSKEPCRFFAKGKCVRGASCRFLHSATGSDDSSPAAAGDGDETGRRPR---SSSGKATPNGGCAEGDED----RGRTVTTAKRPARPCPSPGRKPSSAPAAAVAGDSRVRPEGVCVKRGYAGCSSSKRSGGSSGGDEVAR--RLQRSWTDIVTKDVPMDAGGGTASPASTAITESGSSSEENDNDAEEPIAPARRKLAANAADKRDRNTARXXXXXXXXXTSAPAPGAAAPLDQRRTQPAGGSDSGESDGKGKQAKQACVFFARGRCRYGDRCRFSHDA-----VEETPAAGGGARXXXXXXXXAGRKEKRGVASEPSSHESEG-------FGEDEVAAREAALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELRQS 475          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.160e-38
Identity = 147/476 (30.88%), Postives = 208/476 (43.70%), Query Frame = 1
Query:  790 EKGWCKSGNDCRFTHGTSDKRKLVGDGVEGALGKPA--------TIREPCKFFAKGNCSRGNMCPFSHSSYSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGMLMVT-KQDLLPLDGGDTDTEDSDLEDEPWEDPGSNEGSAYFFGAPGRFDTGSVGGGDGGVSSATSGKGHGSWRDIVQ--------GSSELCEDPTVANDGKPLQVVDATVRALVSSAAADAGVDVEAKPSRDMARAARAAAAFSALNSALSSPRAGKRKV---------------------CAFFVRGCCRFGEYCRNSHE-LDQSETVEVTQEVNGQG---------HEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI------SDR-FGILVGCRHSYCLKCIREWRGKSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKES 2052
            EKG C+ G  CRFTHGTSD R+L  DG  G    P         + +EPC+FFAKG C RG  C F HS+  +D++  RE  +D    +  + +  A+P+    G  A  ++     RG  + T K+   P       +  +       +     EG     G  G   +   GG  GG     +G+   SW DI          G +           G   +  D      ++ A      +   K  R+ AR A AAA  ++  +  +S   G+R+                      C FF RG CR+G+ CR SH+ ++++       E    G          E+ G A   +   +EG        G+D  A   AALDEAE+ QS+ A+CG+CL ++       DR FGILV C+H YCL CI+EWR KS    CPECG+ S   +PS T VTD  RK+ L    ++S
Sbjct:   18 EKGSCRYGASCRFTHGTSDSRELRADGAAGETQTPGQAKPTASTSSKEPCRFFAKGKCVRGASCRFFHSATGSDDS--REGDSDETGRRTRSSSGKATPN----GGCAEGDED----RGQAVTTAKRSTRPCPSPSRQSTSASAAAVAGDSRVRPEGVCEKRGDAGCCSSKKSGGSSGG--DEMTGRLQRSWTDIATEDVPIDAGGGTASSASTASTQSGTSCEENDGDAEEPIAPARRKLAANAADKRDRNTARPAAAAAGNTSAPAPGASAPLGQRRTQPVGGSYRGEIDRKGKQEKQACVFFARGRCRYGDRCRFSHDAVEETPAAGAGGERGSHGGRGGGSVGRKEKRGVASEPSSHASEG-------FGEDEVAAREAALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELRQS 474          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A3R7GYF0_9STRA (RING-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 3.670e-36
Identity = 84/234 (35.90%), Postives = 119/234 (50.85%), Query Frame = 1
Query: 1558 RAGKRKVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRG-----KSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
            RA   K+C FF++G CR+G+ C  +H L   E VE  +E+   G                                        E   SQ  +CG+C E +    +RFG+L GC HS+CL C+R WRG     K   R CP C V ++F++PS  +VT P RK++L+  Y+++LS IPC+HF+ G   CPFG+SCFYAH   DG+L      R    A G  + +R+V L ++F
Sbjct:  226 RAAPPKICTFFLQGLCRYGDTCFYAHSL--RENVENEEEMISMGE---------------------------------------EIRLSQDLECGICYENVVAKGERFGLLSGCNHSFCLTCLRNWRGIADQPKQTVRQCPVCRVETNFIIPSGRMVTKPERKKVLIDEYRKNLSGIPCRHFDEGRGTCPFGTSCFYAHRHPDGTLTSRQV-RTAVDADGQYDVLRQVRLENYF 417          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: K3WR91_GLOUD (RING-type E3 ubiquitin transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR91_GLOUD)

HSP 1 Score: 151 bits (381), Expect = 2.250e-35
Identity = 83/229 (36.24%), Postives = 117/229 (51.09%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
            K C FF++G CR+G  C   H L+  E VE  Q++   G                 E +E  DL                       +C +C + I    +RFG+L GC H++CL C+R WRG + +     R CP C V +HF++PS  +VT P RK++L+  Y+++LS IPC+HF  G   CPFG+SCFYAH   DG+LD     R    A G  + +R+V L +FF
Sbjct:  249 KTCTFFLQGLCRYGNSCFYMHALN--EDVETEQDMVEMGR----------------ELQESMDL-----------------------ECNICYDNILQKEERFGLLSGCNHAFCLTCVRNWRGNADQPKQTVRQCPVCRVETHFIIPSSRMVTSPERKKVLIEAYRKNLSGIPCRHFNEGQGTCPFGTSCFYAHRYSDGTLDSRQV-RTAVDADGHYDVLRQVRLENFF 435          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: H3H388_PHYRM (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H388_PHYRM)

HSP 1 Score: 150 bits (378), Expect = 2.510e-35
Identity = 84/230 (36.52%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWS--AAGDSEAMREVHLSSFF 2235
            K+C FF++G CR+G+ C  +H L   E VE  +E+   G                                        E   SQ  +CG+C E I    +RFG+L GC HS+CL C+R WRG  Q     R CP C V + F++PS  +VT P RK+ L+  Y+++LS IPC+HF+ G   CPFG+SCFYAH   DG+L   A+ ++R +  A G  + +R+V L  +F
Sbjct:  208 KICTFFLQGLCRYGDTCFYAHSLP--ERVESEEEMLAMGE---------------------------------------EIRLSQDLECGICYENIIGKGERFGLLSGCSHSFCLTCLRNWRGADQPKQTVRQCPVCRVETKFIIPSSRMVTKPERKKFLIDVYRKNLSAIPCRHFDEGRGTCPFGTSCFYAHRYPDGTL---ASRQVRTAVDADGQYDVLRQVRLEHYF 393          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: G5AF51_PHYSP (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AF51_PHYSP)

HSP 1 Score: 150 bits (378), Expect = 3.550e-35
Identity = 84/231 (36.36%), Postives = 122/231 (52.81%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWS--AAGDSEAMREVHLSSFF 2235
            K+C FF++G CR+G+ C  SH L   E VE  +E+   G E   +A +E                                       CG+C E I    +RFG+L GC HS+CL C+R WRG + +     R CP C V ++F++PS  +VT P RK++L+  Y+++LS IPC+HF+ G   CPFG+SCFYAH   DG+L   A+  +R +  A G  + +R+V L  +F
Sbjct:  224 KICTFFLQGLCRYGDTCFYSHSLP--EKVESEEEMLAMGEEIRLSADLE---------------------------------------CGICYENILGKGERFGLLSGCNHSFCLTCLRNWRGSADQPKQTVRQCPMCRVETNFIIPSSRMVTKPERKKVLIDVYRKNLSAIPCRHFDEGRGICPFGTSCFYAHRYPDGTL---ASREVRTAVDADGQYDVLRQVRLEHYF 410          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A8K1FMI0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMI0_PYTOL)

HSP 1 Score: 147 bits (371), Expect = 2.440e-34
Identity = 80/229 (34.93%), Postives = 117/229 (51.09%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
            + C +F++G CR+G+ C  SH L+ S  V V                                        D  AL + E A S   +CG+C + +    +RFG+L GC H +CL C+R WRG + +     R CP C + +HFVVPS+ ++ DP RK+ LV RY  +L++IPC+HF+ G   CPFG+SCFYAH   DG+ ++    R    A G  + +R+V L  +F
Sbjct:  217 RTCTYFLQGLCRYGDSCFYSHTLETS-PVPV----------------------------------------DEFALVQEELANSTDLECGICYDNVIEKGERFGLLSGCTHPFCLSCVRNWRGNADQPKQTVRQCPVCRIETHFVVPSNRMIVDPERKQDLVKRYINNLASIPCRHFDEGRGTCPFGTSCFYAHRLPDGTEEVRQL-RTAVDAEGQYDVLRQVRLEHYF 403          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: M4BAQ4_HYAAE (RING-type E3 ubiquitin transferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAQ4_HYAAE)

HSP 1 Score: 147 bits (371), Expect = 2.590e-34
Identity = 82/229 (35.81%), Postives = 116/229 (50.66%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERISD---RFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
            K+C FF++G CR+G  C  +H L  SE  +  +E+                            L +D            E   SQ  +CG+C E + D   RFG+L GC H +CL C+R WRG + +     R CP C V + F++PS  +VT P RK++L+  Y+++LS IPC+HF  G   CPFG+SCFYAH   DG+LD     R    A G  + +R+V L  +F
Sbjct:  218 KICTFFLQGSCRYGNACFYAHSL--SECAQSEEEM----------------------------LARDE-----------EICFSQDLECGICYECVVDKDERFGLLSGCNHVFCLTCLRNWRGNADQPKQTVRQCPVCRVETSFIIPSSRMVTKPERKKVLIDEYRKNLSAIPCRHFNEGRGTCPFGTSCFYAHRFPDGTLDTRQV-RTAVDADGQYDVLRQVRLEQYF 404          
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: F0VZR4_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZR4_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.710e-34
Identity = 77/232 (33.19%), Postives = 121/232 (52.16%), Query Frame = 1
Query: 1576 VCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFFDPRL 2247
            +C+F+++G C++G  C  SH L   +  ++ +++                                        ++E  KA +++ +C +C E++    +RFG+L GC H++CL CIR WRG S +     R CP C V + +++PS  LVTDP RK+ L   +K++L++IPC+HF+ G  ECPFG+SCFY H   DGSLD     R    A G  + +R+V L  F   +L
Sbjct:  255 ICSFYIQGVCKYGNKCIFSHSLQVPDESDIGRQL----------------------------------------VEEEVKASAEI-ECNICYEQVLAKHERFGLLSGCDHAFCLSCIRNWRGHSDQSKQNIRKCPVCRVETAYIIPSSRLVTDPERKQALQETFKQNLASIPCRHFDQGRGECPFGTSCFYKHQYSDGSLDARQV-RTAVDADGHYDVLRQVRLDHFLGSQL 444          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5J0_9STRA3.510e-5129.78RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
D7G211_ECTSI4.430e-4332.78RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5L7F8_9PHAE1.160e-3830.88RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A3R7GYF0_9STRA3.670e-3635.90RING-type E3 ubiquitin transferase n=3 Tax=Phytoph... [more]
K3WR91_GLOUD2.250e-3536.24RING-type E3 ubiquitin transferase n=1 Tax=Globisp... [more]
H3H388_PHYRM2.510e-3536.52RING-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
G5AF51_PHYSP3.550e-3536.36RING-type E3 ubiquitin transferase n=1 Tax=Phytoph... [more]
A0A8K1FMI0_PYTOL2.440e-3434.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4BAQ4_HYAAE2.590e-3435.81RING-type E3 ubiquitin transferase n=1 Tax=Hyalope... [more]
F0VZR4_9STRA2.710e-3433.19RING-type E3 ubiquitin transferase n=1 Tax=Albugo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:354337..360132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G211
Preferred nameFANCE
PFAMsFA_FANCE,LRR_6,LRR_8,zf-CCCH
Model size3558
Max annot lvl2759|Eukaryota
KEGG koko:K10892,ko:K14404
KEGG Pathwayko03015,ko03460,ko05164,map03015,map03460,map05164
KEGG ModuleM00413
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.55e-46
EggNOG OGsKOG1039@1|root,KOG1039@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_003370.1
Descriptionprotein ubiquitination
Cds size1575
COG categoryL
BRITEko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.33.1prot_A-nodosum_M_contig103.33.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig103 355645..359457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866394.8520415-UTR-A-nodosum_M_contig103:354336..3556441680866394.8520415-UTR-A-nodosum_M_contig103:354336..355644Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 354337..355644 -
1680866394.9237318-UTR-A-nodosum_M_contig103:359457..3601321680866394.9237318-UTR-A-nodosum_M_contig103:359457..360132Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 359458..360132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866394.862858-CDS-A-nodosum_M_contig103:355644..3557981680866394.862858-CDS-A-nodosum_M_contig103:355644..355798Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 355645..355798 -
1680866394.8710418-CDS-A-nodosum_M_contig103:356187..3563481680866394.8710418-CDS-A-nodosum_M_contig103:356187..356348Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 356188..356348 -
1680866394.8792415-CDS-A-nodosum_M_contig103:356575..3566891680866394.8792415-CDS-A-nodosum_M_contig103:356575..356689Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 356576..356689 -
1680866394.8889275-CDS-A-nodosum_M_contig103:357618..3580851680866394.8889275-CDS-A-nodosum_M_contig103:357618..358085Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 357619..358085 -
1680866394.8981378-CDS-A-nodosum_M_contig103:358457..3588801680866394.8981378-CDS-A-nodosum_M_contig103:358457..358880Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 358458..358880 -
1680866394.912061-CDS-A-nodosum_M_contig103:359201..3594571680866394.912061-CDS-A-nodosum_M_contig103:359201..359457Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 359202..359457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig103.33.1

>prot_A-nodosum_M_contig103.33.1 ID=prot_A-nodosum_M_contig103.33.1|Name=mRNA_A-nodosum_M_contig103.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=525bp
MKSVLPEDDTRIRPDTCLIQVGPVLLLSRPSIKCIVNLEKGWCKSGNDCR
FTHGTSDKRKLVGDGVEGALGKPATIREPCKFFAKGNCSRGNMCPFSHSS
YSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGM
LMVTKQDLLPLDGGDTDTEDSDLEDEPWEDPGSNEGSAYFFGAPGRFDTG
SVGGGDGGVSSATSGKGHGSWRDIVQGSSELCEDPTVANDGKPLQVVDAT
VRALVSSAAADAGVDVEAKPSRDMARAARAAAAFSALNSALSSPRAGKRK
VCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAV
AEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERISDRFG
ILVGCRHSYCLKCIREWRGKSQKRNCPECGVPSHFVVPSHTLVTDPVRKE
LLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRI
RWSAAGDSEAMREVHLSSFFDPRL*
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mRNA from alignment at A-nodosum_M_contig103:354337..360132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig103.33.1 ID=mRNA_A-nodosum_M_contig103.33.1|Name=mRNA_A-nodosum_M_contig103.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5796bp|location=Sequence derived from alignment at A-nodosum_M_contig103:354337..360132- (Ascophyllum nodosum dioecious)
CGGATCTCTGTTGGCAGACCATTGCTTTTCACCCAGGTAGAGCGACAGGT GGGATCGCAAGCTGCCGGAACGAGACGCCAGCAATGACGAAACAGCACGA TAGCTGCAGTACAAAGCACAGCTATTGTACAAGTTTTTGGTTGTCGGTTT GAACAGAGTTGCCCACTTTGTCCTAAACGAGACCAAGATTCAGCCTGAGT GTGAGTGAGCAGGCTGGCGCGGGACCGGACTGCCCAACCTGTCCCGCGAG ACCAAATTCTTAGGCGCGAACGAGGAAAGGCAAATACTCATTTTCCCTGT TCAGCTGACCACGATTGGCAACCCTACCTGGTTGATGCCATACTCTACTG AAAATACTGACCCTGCATGACATACTATCAGAGTGTGCCCAACAGGATAT ATATGATACATGCAGTAGTATCTACCCACCGCCTAGGGGATTTCTTCAAT CTCTCCCCGGGTCACGCCCTCGTTTTTTCCCACAAGGGAATTTCAGCACC CGTACACCGCGTCAACCGATGGTCGAACGAGTGAATAACCTCGTGGTTTA CTTTTTAGCGGTTTTGTTGTTCGAAGCTTGACAGAGTATCATTTATTTTA TTTTGATTTACAAATATTCCAAGGTCTCCGTCGGCTGAGGTTGCGATGAT CTTTTTCACTTGAACAAGTAATTGAATGAAGAGCGTCCTACCAGAAGATG ATACGCGGATCAGGCCTGACACGTGCCTTATACAAGTTGGTCCAGTGCTC CTTCTATCGCGTCCTTCTATAAAATGCATTGTGAACCTCGAAAAGGGTTG GTGCAAGAGCGGGAATGATTGCAGGTTCACCCATGGCACTTCGGACAAGC GCAAACTTGTCGGCGACGGAGTCGAAGGCGCCTTAGGGAAGCCTGCTACG ATCCGAGAACCCTGCAAGTTCTTCGCGAAAGGTCAGCCCCACTTCGAGCT TCACTTGAGGTTGTGTATTGGCTGATGGAGATGTTCAGGGTTGCTTCGTT TCTAAGGGATTTTGTGTTACTTGACTCTTTGGGTACCGGTTTTTAACTGT GCCGACGTTATTCACCGCTAGAACTACTCTGTGCATGCAGCCCCTCGAGA ATGTCGGCAGATCTATAAATAACCTCATCCAGTGCGACCGTTGGCCCAAT GCGCTGCTCATTCTCTTGCCCGCGTCCCCAATCCCAAAACACGCGCATAA ACTTTCACCGAACTTTCGTTCCCCCAACTGACGCTCCGACGGTACAAAAC AGGAAATTGCTCCAGAGGGAACATGTGCCCCTTCTCGCACTCCAGTTACT CGGCGGACGAGGCCCACCGCCGGGAGACCCTCGCCGACAACCGACCCTCC AAACGACCCGCCCCCGCGGCGCTGGCGTCCCCGCACTATCAGCCGGTCGG CGCGGTTGCTGTCGCGGAGCAACCGCCTCCATTCCGGCGAGGGATGCTGA TGGTGACGAAGCAGGACCTACTACCTCTCGACGGTGGCGACACGGACACT GAGGACAGCGATCTCGAGGACGAGCCATGGGAGGATCCCGGGAGCAACGA GGGCAGCGCCTACTTTTTCGGTGCCCCGGGAAGATTTGATACTGGAAGCG TAGGCGGCGGCGACGGTGGTGTCTCGAGTGCGACGTCTGGAAAGGGTCAC GGGTCTTGGCGCGACATTGTGCAGGGTAAACGAAGGAGAGCTTTTGTCAA ATTTCGTGACATCCTGTTTGGGTCCGCGTCGTGGAGGTGGTCTCGAATAG TAGTTTGGACCGTAGGTTAGGAACGGCAAATGTCCGTGAGCTCCCACGGG TAGGGCGGTGATGATCTCGGAACGCGGGGGGGAGAAAGAGGCTCCAAAGA GCAAAACGCTCAAAAGCTGAAGCGCCTTAGTTGTTGTTGTTGTTTTCCGC CGGAGGGCCTCAGGAACGGGCGGAATGATACGCCGCAGGGAATCCTATCA CCTATCCGCGGTTCTGACTGCATCGTGCGTCCTGGTCGTCCTCAACCAAC CCAACCCGGCCTGACGCCATTCCCCGATACGTGTCTCGTGTCTGTAGGAA GCTCGGAATTGTGTGAAGATCCCACGGTTGCGAACGACGGGAAACCGCTG CAAGTTGTGGACGCTACGGTCCGCGCTCTTGTCTCTTCGGCTGCCGCAGA TGCGGGTGTGGATGTGGAGGCCAAGCCTTCGAGGGATATGGCAAGAGCGG CCAGGGCAGCGGCGGCATTTTCAGCTCTGAATTCTGCGCTGTCCTCGCCC CGCGCCGGCAAGCGCAAGGTCTGTGCGTTTTTCGTGAGGGGTTGTTGCCG GTTCGGCGAATACTGTAGGAACTCCCACGAGCTCGACCAGTCGGAGACGG TAGAGGTGACGCAGGAGGTGAACGGGCAGGGACACGAAGAGGAGGGGACG GCTGTGATAGAGGCAGTGGCAGAAGCAGAGGGTGAAAAGAAGGAGAAGCG GGACTTGGGGAAAGACACGGCGGCCAAGGACGCGGCGGCGTTGGACGAGG CGGAAAAAGCTCAGGCAAGCAAAACCGTAAACATTTTTTCTCGTCGTAAC CGAAGGCACGGCGCATGTCCAAAGCGTGTTACATTGTTGGCGTGCTGTAA CAAACGCCCAAGTCTAGAGGTCCGCTGCCCAGTTTTGGTTTGATCTCGGT TCCTGCCCGCGAGCCATGTTTTTTTCAACGTGCTATAGAAATGACCACAT CCCACCTACCGTAACGCTATCTATGCCTATCCCGCTTGTACTCACCCATC TTTTCCCCGTCCGCGACTAACGGTCTTTTTTTATCACCATGTCAGTTCCG TCTTCCTCAACTACCCTCAAGAAATGTTTGAGTGTTAGCTTGCTCACGCC CTCATGCCTTCCTTAACAAGCAGTATTTTGTTCCCCCCGAGATTCGACCT CGGGACTGCTGTACGACTGGCCGCCCAGGTTGTGAATTGAACCACCTGGG TGAGGAGGTGGTAGCCAGAGTCCTGATTTGGTCATATGTGTTCCTCCTCC AGGAGAAAACAGTGGTACACCACTGATGAGATGGGATAAGGACCCCGATA AGAGGAGATACCGCTGGTTACCGGGGCTGAGAACTTGGGGGTTTGGCTTG AATCTACCTCTACAAATTGCGGACACAAAGTCGACCTGTGGGCCGGCGTT AACCGAAGGAAAACCTGTCTAAGTTGATTTGCTTCAGCATATTGCTTCGC TTCTCGGAACAGTTTCGCCCTTTATCCGAAAGTAGAGTTCTTATGCAATG TCATACCTTGTAATAGCTTGAAGGCCCGCGAACGCGTTTTTACGCGAAGA CAAAGACGCCCTGCGCAGAAGCATGGCCCTCTTCTGTCTACCGCCATGGG CGATCGATCGGTTTGTTTTAACCCACCGCTGTCGGCGTGCTCCGAGCATG CGGTTCATCTCTCTCTTACACCACCCCATTCCTCGCTTGGCAGTCCCAGG TGGCGGATTGTGGGGTGTGCCTCGAGAGAATCAGCGACAGGTTCGGTATC CTGGTGGGATGCCGGCATTCGTATTGTCTTAAGTGCATCAGAGAGTGGCG GGGCAAGGTGAGATTTTGACGGTCGGGTTTCTTGGAAGAGGAAGCGGCAT CGTGTGCTTTTGCTCGCTTGAACGTGGACGCGTCATCTCGCGCGTGCGGC AACGAATGCCAGAATGAAAGACGCTTGAATGTCTTGGAGAGAGCATCAAA CCATCCCTCACCCACCCACCCCCGTCCACCACTATATATTATATATGTTG TTCCGACCGTGCCGGGTGCAAACCGCCATGTCAGAGTCAGAAGCGCAACT GTCCAGAATGCGGGGTCCCGTCGCACTTCGTTGTGCCTAGCCATACTCTC GTCACCGATCCGGTACGGAAGGAGCTCTTGGTTTCCCGGTACAAGGAATC TCTGTCGACCATCCCTTGTCAGCACTTCGAGTACGGAGTTTCAGAGTAAG GGAGTCTTCGGCCGCCGGCCACTGGCCACGCTGCTGCAGACACAGTAGCT TGTAGACAGGAGCTCTGTCGGCGGTTGGAGTCTGGACTCCGATGCACCAA GCATGCGAAGCCTAGTGTAGCAGACAAAAGTGTCTCTGTGCGTTGCTTTG CGGAGGCTCGACCGCGATACATGCTCCTTTTCTATTCGACCCACGCGTGC GCGCTCGCGCATGTCGACGTTTAGCATGCATCCATTGCATAGACGCGGAT TTAATGCCACCTCAACCCAGCGGAAAATTGCCTTACCAGCACCTGATATC GTATCGTGTCAGTCCTCCTTTCTCCTCTTCTCCCCTAAGGTTTTGGGCGC GCTGCTAAATCTCACTTCCGCCTCCCACCATCAGGTGTCCGTTCGGCAGC TCGTGTTTCTACGCGCACCTCAAGAAGGACGGAAGTCTCGACCTTTATGC GACTCCTCGCATACGGTGGTCGGCTGCGGGCGACAGCGAGGCTATGCGCG AGGTCCACCTGTCTTCGTTTTTCGATCCGCGACTGTAACACGGTCGCGCA CTGGAACTCCCTCGTAGGGCGGGACAGATGCAAGCGGAAAAGCTCGCGGC ATGACCACCCGCGCGTATTTCCTCGAGAGGAGGAGGCGTTATATCAGCGG TGACGACCCGACGGTCGACGTTGTATCCTTTTTCGTGGGCTCGAAATGAG CCCTGCACTTTCATTCGTGGCGTCGACTGTAGCCAAGAAACTTGTCAAGA GTAACTCCTGCGGCATGGGCAGTACAACGCTTGAAAATTAACCACACTTG TGGTGGGACCTTGGGGGGAAGATTGGTGTTCTTGAATAGCGGGCTCAAGG ACGCTCCGTCATCGCCCTCTGCGGTTCTTTGTACGGTAAGTTGGATGATC GCGGCAACGTGAGGCAAGCAATGTGCTTGCAAACCCAGGTTATTTTCCCC TTCACAAGGGACCCAGTAACGCGCCATTGGCCGGAGTGTTCCCCCGAGTA TTTCACCCTGAGGTTTCTGAAAGTGTGAGCAAATAGCGGCTGACTCGACT ACGAGCACCTCCTGACTGAAGGAGTATGACACCACGCGTATGGCTCAAGG GTTGCTATTGGCGGGAAGATGTTGAGTCATTATAACTGCTGGGAAGCAGC AGGCGAGCATAAAACTACTTGTTACTCACTCTCTGGCTTCGTGAACAGCG ACCTAATCCCTGAAATTTCACGTCCCTGAAAGGTCTCATGTTTTGAGATC CACGGCTTCCCGTCCGTTTGTTGGAGAACCGGGGCGCGCGAACTCTCTTA AGAACTATTAATAGGACCCTTCATACTAATATCACGGTTATGATTTTTTG TATAAGGTTGACACAAAATACTCGTACGAAGCTTTGACGCTGTACTGTGT AGCACTAAAACGTTTTGCGACTATCGAAGGTCAAGGGTTTATTTTATGTA CACTCTTGCGTAGCTGCAACTGGTAACTTGTCGGGAGGTCTCGAGTCGAC GGTGTGGAATATTTGCCGGGGTTGGAGAATCGACATCCCCTCCAACGCCG CGCAAGATTTTGGCACAACAGGTTGTATAGTATCTAGGCAAGATAACTTC AAACTTTGGTTTTTGCCTTGAGTTCAAAAAGACAGTGTTGACGCAGTTTT CCCCCGGTAAAACAGGTAACAACGCGTCTGGGGGAAGAGAGGAAAGTGTA GCATACCGCGGCCGATAACCTTGTAATGTATGAGCACGACCGAAAAGGAA ATCGGAGAAAAGAAAGGAAGGACTGACAAAGGGAAGATTTTGGAAATACG ATCGCGAAGGGCTGCGCGCGCTTCCCTCTTGCGGTACTAAACAGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig103:354337..360132-

>mRNA_A-nodosum_M_contig103.33.1 ID=mRNA_A-nodosum_M_contig103.33.1|Name=mRNA_A-nodosum_M_contig103.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1575bp|location=Sequence derived from alignment at A-nodosum_M_contig103:354337..360132- (Ascophyllum nodosum dioecious)
ATGAAGAGCGTCCTACCAGAAGATGATACGCGGATCAGGCCTGACACGTG
CCTTATACAAGTTGGTCCAGTGCTCCTTCTATCGCGTCCTTCTATAAAAT
GCATTGTGAACCTCGAAAAGGGTTGGTGCAAGAGCGGGAATGATTGCAGG
TTCACCCATGGCACTTCGGACAAGCGCAAACTTGTCGGCGACGGAGTCGA
AGGCGCCTTAGGGAAGCCTGCTACGATCCGAGAACCCTGCAAGTTCTTCG
CGAAAGGAAATTGCTCCAGAGGGAACATGTGCCCCTTCTCGCACTCCAGT
TACTCGGCGGACGAGGCCCACCGCCGGGAGACCCTCGCCGACAACCGACC
CTCCAAACGACCCGCCCCCGCGGCGCTGGCGTCCCCGCACTATCAGCCGG
TCGGCGCGGTTGCTGTCGCGGAGCAACCGCCTCCATTCCGGCGAGGGATG
CTGATGGTGACGAAGCAGGACCTACTACCTCTCGACGGTGGCGACACGGA
CACTGAGGACAGCGATCTCGAGGACGAGCCATGGGAGGATCCCGGGAGCA
ACGAGGGCAGCGCCTACTTTTTCGGTGCCCCGGGAAGATTTGATACTGGA
AGCGTAGGCGGCGGCGACGGTGGTGTCTCGAGTGCGACGTCTGGAAAGGG
TCACGGGTCTTGGCGCGACATTGTGCAGGGAAGCTCGGAATTGTGTGAAG
ATCCCACGGTTGCGAACGACGGGAAACCGCTGCAAGTTGTGGACGCTACG
GTCCGCGCTCTTGTCTCTTCGGCTGCCGCAGATGCGGGTGTGGATGTGGA
GGCCAAGCCTTCGAGGGATATGGCAAGAGCGGCCAGGGCAGCGGCGGCAT
TTTCAGCTCTGAATTCTGCGCTGTCCTCGCCCCGCGCCGGCAAGCGCAAG
GTCTGTGCGTTTTTCGTGAGGGGTTGTTGCCGGTTCGGCGAATACTGTAG
GAACTCCCACGAGCTCGACCAGTCGGAGACGGTAGAGGTGACGCAGGAGG
TGAACGGGCAGGGACACGAAGAGGAGGGGACGGCTGTGATAGAGGCAGTG
GCAGAAGCAGAGGGTGAAAAGAAGGAGAAGCGGGACTTGGGGAAAGACAC
GGCGGCCAAGGACGCGGCGGCGTTGGACGAGGCGGAAAAAGCTCAGTCCC
AGGTGGCGGATTGTGGGGTGTGCCTCGAGAGAATCAGCGACAGGTTCGGT
ATCCTGGTGGGATGCCGGCATTCGTATTGTCTTAAGTGCATCAGAGAGTG
GCGGGGCAAGAGTCAGAAGCGCAACTGTCCAGAATGCGGGGTCCCGTCGC
ACTTCGTTGTGCCTAGCCATACTCTCGTCACCGATCCGGTACGGAAGGAG
CTCTTGGTTTCCCGGTACAAGGAATCTCTGTCGACCATCCCTTGTCAGCA
CTTCGAGTACGGAGTTTCAGAGTGTCCGTTCGGCAGCTCGTGTTTCTACG
CGCACCTCAAGAAGGACGGAAGTCTCGACCTTTATGCGACTCCTCGCATA
CGGTGGTCGGCTGCGGGCGACAGCGAGGCTATGCGCGAGGTCCACCTGTC
TTCGTTTTTCGATCCGCGACTGTAA
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