mRNA_A-nodosum_M_contig103.33.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A835Z5J0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J0_9STRA) HSP 1 Score: 197 bits (501), Expect = 3.510e-51 Identity = 148/497 (29.78%), Postives = 202/497 (40.64%), Query Frame = 1
Query: 790 EKGWCKSGNDCRFTHGTSDKRKLVGDGVEGALGK--PATIREPCKFFAKGNCSRGNMCPFSHSSYSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGMLMVTKQDLLPLDGGDTDTEDSDLEDEP---------WEDPGSNEGSAYFFGAPGRFDTGSVGGGDGGVSSATSGKGHGSWRDIVQGSSELCEDPTVANDGKPLQVVDATVRALVSSAAADAGVDVEAKPSRDMARAARAAAAFSALNSALSSPRAGKRKVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERISDRFGILVGCRHSYCLKCIREWRG-----KSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSF 2232
++G C + +CRF HG SD+R LVG GA G PA+I+ C++ A+G CS G+ CP+SHSSY ADEA RR + + A P +P+ +Q ++K +L G ++ ++ + E WE P + AYF+GA G F VA P V+ R+VC FF+ G CR+G CRN+H AL+ E+ +S A+CG+C + + RFG+L GC H++CL+CIR WR ++ R CP C PSHF+VPS LV P RK LV RYKE+L+ IPC+HF G +CPFG SCFYAHL DGS R+R A G++E +V LSSF
Sbjct: 17 DRGKCVNDINCRFRHGPSDRRPLVGAAAAGAAGAAPPASIKVSCRYHAQGRCSNGSACPYSHSSYEADEAVRRRQVQQXXXXLQARARQSAMPQQRPLFGSRSEDQS--VAEATAQISKLTVL----GKSEAKEQETHQEKDSGRNGEVEWEFPSDED--AYFYGAAGTFAP------------------QXXXXXXXXXXXXXXXWSAVAVTNVPDNVLXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------XXXXXXREVCQFFLSGTCRYGVACRNAHSAAXXXXXXXX-----------------------------------------TALEAEERERSARAECGICYDPVQGRFGVLTGCDHAFCLECIRNWRAVGVREQAAVRACPLCRAPSHFIVPSARLVAHPARKAALVERYKETLARIPCRHFASG--DCPFGGSCFYAHLAADGSRAAPPQLRMRAGADGETEVHGDVQLSSF 426
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: D7G211_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G211_ECTSI) HSP 1 Score: 175 bits (443), Expect = 4.430e-43 Identity = 157/479 (32.78%), Postives = 205/479 (42.80%), Query Frame = 1
Query: 790 EKGWCKSGNDCRFTHGTSDKRKLVGDGVEGALGKPATIR--------EPCKFFAKGNCSRGNMCPFSHSSYSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGMLMVT-KQDLLPLDGGDTDTEDSDLEDEPWEDPGSNEGSAYFFGAPGRFDTGSVGGGDGGVSSATSGKGHGSWRDIVQ--------GSSELCEDPTVANDGKPLQVVDATVRALVSSAAADAGVDVEAKPSRDMAR----------AARAAAAFSALNSALSSPRAGK------------RKVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGH------------EEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI------SDR-FGILVGCRHSYCLKCIREWRGKSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKES 2052
EKG C+ G CRFTHGTSD R+L DG G P R EPC+FFAKG C RG C F HS+ +D++ + +RP +S P G A ++ RG + T K+ P + + EG G G + GG GG A + SW DIV G + + G + D ++ A + K R+ AR +A A A + L+ + P G ++ C FF RG CR+G+ CR SH+ VE T G E+ G A + E+EG G+D A AALDEAEK QS+ A+CG+CLE++ DR FGILV CRH YCL CIREWR KS CPECG+ S V+PS TLVTDP RK+ L ++S
Sbjct: 18 EKGSCRYGASCRFTHGTSDSRELRADGAAGETQTPRQARPTASTSSKEPCRFFAKGKCVRGASCRFLHSATGSDDSSPAAAGDGDETGRRPR---SSSGKATPNGGCAEGDED----RGRTVTTAKRPARPCPSPGRKPSSAPAAAVAGDSRVRPEGVCVKRGYAGCSSSKRSGGSSGGDEVAR--RLQRSWTDIVTKDVPMDAGGGTASPASTAITESGSSSEENDNDAEEPIAPARRKLAANAADKRDRNTARXXXXXXXXXTSAPAPGAAAPLDQRRTQPAGGSDSGESDGKGKQAKQACVFFARGRCRYGDRCRFSHDA-----VEETPAAGGGARXXXXXXXXAGRKEKRGVASEPSSHESEG-------FGEDEVAAREAALDEAEKIQSRSAECGICLEKVRKLGKVKDRVFGILVSCRHVYCLGCIREWRDKSDNHACPECGLTSSLVIPSKTLVTDPDRKKRLALELRQS 475
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A6H5L7F8_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F8_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.160e-38 Identity = 147/476 (30.88%), Postives = 208/476 (43.70%), Query Frame = 1
Query: 790 EKGWCKSGNDCRFTHGTSDKRKLVGDGVEGALGKPA--------TIREPCKFFAKGNCSRGNMCPFSHSSYSADEAHRRETLADNRPSKRPAPAALASPHYQPVGAVAVAEQPPPFRRGMLMVT-KQDLLPLDGGDTDTEDSDLEDEPWEDPGSNEGSAYFFGAPGRFDTGSVGGGDGGVSSATSGKGHGSWRDIVQ--------GSSELCEDPTVANDGKPLQVVDATVRALVSSAAADAGVDVEAKPSRDMARAARAAAAFSALNSALSSPRAGKRKV---------------------CAFFVRGCCRFGEYCRNSHE-LDQSETVEVTQEVNGQG---------HEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI------SDR-FGILVGCRHSYCLKCIREWRGKSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKES 2052
EKG C+ G CRFTHGTSD R+L DG G P + +EPC+FFAKG C RG C F HS+ +D++ RE +D + + + A+P+ G A ++ RG + T K+ P + + + EG G G + GG GG +G+ SW DI G + G + D ++ A + K R+ AR A AAA ++ + +S G+R+ C FF RG CR+G+ CR SH+ ++++ E G E+ G A + +EG G+D A AALDEAE+ QS+ A+CG+CL ++ DR FGILV C+H YCL CI+EWR KS CPECG+ S +PS T VTD RK+ L ++S
Sbjct: 18 EKGSCRYGASCRFTHGTSDSRELRADGAAGETQTPGQAKPTASTSSKEPCRFFAKGKCVRGASCRFFHSATGSDDS--REGDSDETGRRTRSSSGKATPN----GGCAEGDED----RGQAVTTAKRSTRPCPSPSRQSTSASAAAVAGDSRVRPEGVCEKRGDAGCCSSKKSGGSSGG--DEMTGRLQRSWTDIATEDVPIDAGGGTASSASTASTQSGTSCEENDGDAEEPIAPARRKLAANAADKRDRNTARPAAAAAGNTSAPAPGASAPLGQRRTQPVGGSYRGEIDRKGKQEKQACVFFARGRCRYGDRCRFSHDAVEETPAAGAGGERGSHGGRGGGSVGRKEKRGVASEPSSHASEG-------FGEDEVAAREAALDEAERIQSRSAECGICLGKVRKLGKVKDRVFGILVSCKHIYCLGCIQEWRDKSNNHACPECGLSSSLALPSKTFVTDLDRKKRLALELRQS 474
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A3R7GYF0_9STRA (RING-type E3 ubiquitin transferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GYF0_9STRA) HSP 1 Score: 153 bits (386), Expect = 3.670e-36 Identity = 84/234 (35.90%), Postives = 119/234 (50.85%), Query Frame = 1
Query: 1558 RAGKRKVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRG-----KSQKRNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
RA K+C FF++G CR+G+ C +H L E VE +E+ G E SQ +CG+C E + +RFG+L GC HS+CL C+R WRG K R CP C V ++F++PS +VT P RK++L+ Y+++LS IPC+HF+ G CPFG+SCFYAH DG+L R A G + +R+V L ++F
Sbjct: 226 RAAPPKICTFFLQGLCRYGDTCFYAHSL--RENVENEEEMISMGE---------------------------------------EIRLSQDLECGICYENVVAKGERFGLLSGCNHSFCLTCLRNWRGIADQPKQTVRQCPVCRVETNFIIPSGRMVTKPERKKVLIDEYRKNLSGIPCRHFDEGRGTCPFGTSCFYAHRHPDGTLTSRQV-RTAVDADGQYDVLRQVRLENYF 417
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: K3WR91_GLOUD (RING-type E3 ubiquitin transferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WR91_GLOUD) HSP 1 Score: 151 bits (381), Expect = 2.250e-35 Identity = 83/229 (36.24%), Postives = 117/229 (51.09%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
K C FF++G CR+G C H L+ E VE Q++ G E +E DL +C +C + I +RFG+L GC H++CL C+R WRG + + R CP C V +HF++PS +VT P RK++L+ Y+++LS IPC+HF G CPFG+SCFYAH DG+LD R A G + +R+V L +FF
Sbjct: 249 KTCTFFLQGLCRYGNSCFYMHALN--EDVETEQDMVEMGR----------------ELQESMDL-----------------------ECNICYDNILQKEERFGLLSGCNHAFCLTCVRNWRGNADQPKQTVRQCPVCRVETHFIIPSSRMVTSPERKKVLIEAYRKNLSGIPCRHFNEGQGTCPFGTSCFYAHRYSDGTLDSRQV-RTAVDADGHYDVLRQVRLENFF 435
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: H3H388_PHYRM (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H388_PHYRM) HSP 1 Score: 150 bits (378), Expect = 2.510e-35 Identity = 84/230 (36.52%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWS--AAGDSEAMREVHLSSFF 2235
K+C FF++G CR+G+ C +H L E VE +E+ G E SQ +CG+C E I +RFG+L GC HS+CL C+R WRG Q R CP C V + F++PS +VT P RK+ L+ Y+++LS IPC+HF+ G CPFG+SCFYAH DG+L A+ ++R + A G + +R+V L +F
Sbjct: 208 KICTFFLQGLCRYGDTCFYAHSLP--ERVESEEEMLAMGE---------------------------------------EIRLSQDLECGICYENIIGKGERFGLLSGCSHSFCLTCLRNWRGADQPKQTVRQCPVCRVETKFIIPSSRMVTKPERKKFLIDVYRKNLSAIPCRHFDEGRGTCPFGTSCFYAHRYPDGTL---ASRQVRTAVDADGQYDVLRQVRLEHYF 393
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: G5AF51_PHYSP (RING-type E3 ubiquitin transferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AF51_PHYSP) HSP 1 Score: 150 bits (378), Expect = 3.550e-35 Identity = 84/231 (36.36%), Postives = 122/231 (52.81%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWS--AAGDSEAMREVHLSSFF 2235
K+C FF++G CR+G+ C SH L E VE +E+ G E +A +E CG+C E I +RFG+L GC HS+CL C+R WRG + + R CP C V ++F++PS +VT P RK++L+ Y+++LS IPC+HF+ G CPFG+SCFYAH DG+L A+ +R + A G + +R+V L +F
Sbjct: 224 KICTFFLQGLCRYGDTCFYSHSLP--EKVESEEEMLAMGEEIRLSADLE---------------------------------------CGICYENILGKGERFGLLSGCNHSFCLTCLRNWRGSADQPKQTVRQCPMCRVETNFIIPSSRMVTKPERKKVLIDVYRKNLSAIPCRHFDEGRGICPFGTSCFYAHRYPDGTL---ASREVRTAVDADGQYDVLRQVRLEHYF 410
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: A0A8K1FMI0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMI0_PYTOL) HSP 1 Score: 147 bits (371), Expect = 2.440e-34 Identity = 80/229 (34.93%), Postives = 117/229 (51.09%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
+ C +F++G CR+G+ C SH L+ S V V D AL + E A S +CG+C + + +RFG+L GC H +CL C+R WRG + + R CP C + +HFVVPS+ ++ DP RK+ LV RY +L++IPC+HF+ G CPFG+SCFYAH DG+ ++ R A G + +R+V L +F
Sbjct: 217 RTCTYFLQGLCRYGDSCFYSHTLETS-PVPV----------------------------------------DEFALVQEELANSTDLECGICYDNVIEKGERFGLLSGCTHPFCLSCVRNWRGNADQPKQTVRQCPVCRIETHFVVPSNRMIVDPERKQDLVKRYINNLASIPCRHFDEGRGTCPFGTSCFYAHRLPDGTEEVRQL-RTAVDAEGQYDVLRQVRLEHYF 403
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: M4BAQ4_HYAAE (RING-type E3 ubiquitin transferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAQ4_HYAAE) HSP 1 Score: 147 bits (371), Expect = 2.590e-34 Identity = 82/229 (35.81%), Postives = 116/229 (50.66%), Query Frame = 1
Query: 1573 KVCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERISD---RFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFF 2235
K+C FF++G CR+G C +H L SE + +E+ L +D E SQ +CG+C E + D RFG+L GC H +CL C+R WRG + + R CP C V + F++PS +VT P RK++L+ Y+++LS IPC+HF G CPFG+SCFYAH DG+LD R A G + +R+V L +F
Sbjct: 218 KICTFFLQGSCRYGNACFYAHSL--SECAQSEEEM----------------------------LARDE-----------EICFSQDLECGICYECVVDKDERFGLLSGCNHVFCLTCLRNWRGNADQPKQTVRQCPVCRVETSFIIPSSRMVTKPERKKVLIDEYRKNLSAIPCRHFNEGRGTCPFGTSCFYAHRFPDGTLDTRQV-RTAVDADGQYDVLRQVRLEQYF 404
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Match: F0VZR4_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZR4_9STRA) HSP 1 Score: 148 bits (373), Expect = 2.710e-34 Identity = 77/232 (33.19%), Postives = 121/232 (52.16%), Query Frame = 1
Query: 1576 VCAFFVRGCCRFGEYCRNSHELDQSETVEVTQEVNGQGHEEEGTAVIEAVAEAEGEKKEKRDLGKDTAAKDAAALDEAEKAQSQVADCGVCLERI---SDRFGILVGCRHSYCLKCIREWRGKSQK-----RNCPECGVPSHFVVPSHTLVTDPVRKELLVSRYKESLSTIPCQHFEYGVSECPFGSSCFYAHLKKDGSLDLYATPRIRWSAAGDSEAMREVHLSSFFDPRL 2247
+C+F+++G C++G C SH L + ++ +++ ++E KA +++ +C +C E++ +RFG+L GC H++CL CIR WRG S + R CP C V + +++PS LVTDP RK+ L +K++L++IPC+HF+ G ECPFG+SCFY H DGSLD R A G + +R+V L F +L
Sbjct: 255 ICSFYIQGVCKYGNKCIFSHSLQVPDESDIGRQL----------------------------------------VEEEVKASAEI-ECNICYEQVLAKHERFGLLSGCDHAFCLSCIRNWRGHSDQSKQNIRKCPVCRVETAYIIPSSRLVTDPERKQALQETFKQNLASIPCRHFDQGRGECPFGTSCFYKHQYSDGSLDARQV-RTAVDADGHYDVLRQVRLDHFLGSQL 444 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig103.33.1 >prot_A-nodosum_M_contig103.33.1 ID=prot_A-nodosum_M_contig103.33.1|Name=mRNA_A-nodosum_M_contig103.33.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=525bp MKSVLPEDDTRIRPDTCLIQVGPVLLLSRPSIKCIVNLEKGWCKSGNDCRback to top mRNA from alignment at A-nodosum_M_contig103:354337..360132- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig103.33.1 ID=mRNA_A-nodosum_M_contig103.33.1|Name=mRNA_A-nodosum_M_contig103.33.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5796bp|location=Sequence derived from alignment at A-nodosum_M_contig103:354337..360132- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig103:354337..360132- >mRNA_A-nodosum_M_contig103.33.1 ID=mRNA_A-nodosum_M_contig103.33.1|Name=mRNA_A-nodosum_M_contig103.33.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1575bp|location=Sequence derived from alignment at A-nodosum_M_contig103:354337..360132- (Ascophyllum nodosum dioecious)back to top |