mRNA_A-nodosum_M_contig103.15.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A6H5L6Q5_9PHAE (SREBP regulating gene protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q5_9PHAE) HSP 1 Score: 192 bits (488), Expect = 7.610e-50 Identity = 149/396 (37.63%), Postives = 172/396 (43.43%), Query Frame = 3
Query: 636 VSLGPDAIPSVVVYERSPSSEDPDPLGPTRSGGARRGLGL-----------------KG------------CSNTVQGVSLLADSEGRVCQRRNQDPQ---------RPGCCATGRSL---------------------------------AGDGEGLELPKVDQGLRRSQQALVSARSEPITQ---------------GFPPIEAFSRAFSCWSCDVGEGGSS--------------CCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDF-GAGGVAGH------PPRPLPYSPGEGES------------EAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPLA----LGMSGSQGGIAPSGERR-APPLQLDPFLFEF 1451
VSLGPDAIPSV++ ER PS P GP GGAR+ L +G C NTVQG +L+ADSEGRVC R + RPG A G + + RR + VS + + FPP EA S FSCWSCDVGE G S SYEFCVSCCQ+P R +EREAI+ SAA SGHPAY D G G PPR L S E+ +A+ AF CAFRCRTYSGSV HENSYRSPLKHCFGRFRPP A + G + G+ E R APP Q+DP LF+
Sbjct: 156 VSLGPDAIPSVLLVERGPSGL---PSGPALPGGARKASSLVDVTGAVLGDGGGGGEIRGGEGRENSSNPYRCRNTVQGATLVADSEGRVCHRAELIVEEGDDXXVRHRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKHKHPPAAPHSGPATTRTE--TRRGVEGGVSVELVELGELAHGXXXXXXXXXXXXFPPEEALSTPFSCWSCDVGEDGPSGNXXXXXXXXXXXXXXSSYEFCVSCCQNPQRGKEREAIQASAALSGHPAYRDLLGPGNNDASNRRELPPPRQLQASHAAAEAGVEKSQEEAEERDAREMAFAHCAFRCRTYSGSVVHENSYRSPLKHCFGRFRPPAASAAAAALPGGRAGVVEGRESRGAPPHQVDPLLFDL 546
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: D7FXG4_ECTSI (SREBP regulating gene protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG4_ECTSI) HSP 1 Score: 185 bits (470), Expect = 2.410e-47 Identity = 143/392 (36.48%), Postives = 157/392 (40.05%), Query Frame = 3
Query: 636 VSLGPDAIPSVVVYERSPSSEDPDPLGPTRSGGARRGLGL------------------KG---------CSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARSEPITQGFPPI------------------------------------------------------EAFSRAFSCWSCDVGEGG--------------SSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDF-GAGG---VAGHPPRPLPYSPGEG------------------ESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPLA----LGMSGSQGGIAPSGERR-APPLQLDPFLF 1445
VSLGPDAIPSV++ ER PS P GP GGAR+ L +G C NTVQG +L+ADSEGRVC R + EA S FSCWSCDVGE G SSCC SYEFCVSCCQ+P R EEREAI+ SAA SGHPAY D G+G G P E +A+ AF CAFRCRTYSGSVAHENSYRSPLKHCFGRFRPP A + G GG+ GE R APPLQLDP LF
Sbjct: 157 VSLGPDAIPSVLLVERGPSGL---PSGPALPGGARKASSLVDPAGAVPGGGGGETRGGRGRENSSNPYRCRNTVQGATLVADSEGRVCHRAELVVEEGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEALSTPFSCWSCDVGEDGPSGSNGGGNDSPSFSSCCSSYEFCVSCCQNPQRGEEREAIQASAALSGHPAYRDLLGSGNNDAANGREPXXXXXXXXXXXXXEAGGVEKNGQQVEAEERDARELAFAHCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPAASAAAAALPGGWGGVVEGGESRGAPPLQLDPLLF 545
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A7S3UXD3_HETAK (SREBP regulating gene protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXD3_HETAK) HSP 1 Score: 110 bits (275), Expect = 1.370e-22 Identity = 72/215 (33.49%), Postives = 101/215 (46.98%), Query Frame = 3
Query: 762 CSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARS------EPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPLALGMSGSQGG 1388
CSNTVQG +ADSEG VC R +P+ GCC S E ++ K+ + + S Q+ S + + F + +SC+SCD GS CC+ YE CVSCC DP+ + E K ++S H Y G F+ C ++CRT SGSV +ENSYR+P+K+C+G P L G + + G
Sbjct: 15 CSNTVQGSKFIADSEGYVCFRAYVNPET-GCC----SAFYPSEEKKIGKLSKTVGGSSQSDAEDSSPSQTFSKDLAVNFDQTQPQLGQYSCFSCD---SGSHCCQEYEMCVSCCMDPANRDVLEKFK---SQSTHFVYQHTPLG-------------------------FEFCRYKCRTSSGSVQNENSYRNPVKYCYGELLPELIPGSTVNSNG 193
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: T0QMQ3_SAPDV (SREBP regulating gene protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QMQ3_SAPDV) HSP 1 Score: 91.7 bits (226), Expect = 2.340e-16 Identity = 62/171 (36.26%), Postives = 75/171 (43.86%), Query Frame = 3
Query: 951 ARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIK--VSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPLALGMSGSQGGIAPSGERRAP------PLQLDPF 1439
+R + G P+ A + FSC SC+V CC YE CVSCC P + RE ++ + A HP Y G H L F CAFRCRT S SV H+NSYRS KHC+G RP L + S G S A PL+ DPF
Sbjct: 193 SRESLLPSGCCPVAASTVTFSCTSCNVA--APHCCSEYERCVSCCMSP---DHREILRHFLLHANPAHPVY------GAPHH-----------------LSVFGFCAFRCRTSSASVQHQNSYRSTKKHCYGLHRPRKELSVVNSDGTANKSAAFDASLPIPTSPLEWDPF 335
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A2I4ETA7_JUGRE (SREBP regulating gene protein n=7 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4ETA7_JUGRE) HSP 1 Score: 88.6 bits (218), Expect = 9.160e-16 Identity = 64/192 (33.33%), Postives = 77/192 (40.10%), Query Frame = 3
Query: 762 CSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCF 1337
C NTVQG LL+D GRVC + DP+ GCC P +A FSC C++ S CC SYEFCVSCC +PSR ++ + +KV A+ AG AG FD CA RCR S SV HEN+Y S HCF
Sbjct: 41 CRNTVQGRYLLSDDNGRVCDALSMDPES-GCC------------------------------------------PGKA--EKFSCHGCNLL---SQCCNSYEFCVSCCLNPSRTQKEQVLKVKIAKQAT-------AGTYAG--------------------VFDFCAGRCRHNSESVVHENAYLSDFHHCF 157
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A6J1GW16_CUCMO (SREBP regulating gene protein n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1GW16_CUCMO) HSP 1 Score: 84.7 bits (208), Expect = 4.080e-15 Identity = 64/203 (31.53%), Postives = 79/203 (38.92%), Query Frame = 3
Query: 738 RRGLGL---KGCSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCF 1337
R +GL + C +TVQG LLAD G VC + DP CC G+G + P C C++ S CC SYE+CVSCCQDPSR + + +K+ A+ AG AG FD C RCR S SV HEN+YRS HCF
Sbjct: 27 RNNIGLAVNRSCRSTVQGRYLLADDSGYVCDASSFDPMSR-CCL--------GKGEKFP------------------------------------CHGCNLV---SQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPST-------AGTYAG--------------------VFDFCVGRCRHNSESVVHENAYRSDYHHCF 154
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A2P6QUA7_ROSCH (SREBP regulating gene protein n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QUA7_ROSCH) HSP 1 Score: 84.3 bits (207), Expect = 2.350e-14 Identity = 63/192 (32.81%), Postives = 77/192 (40.10%), Query Frame = 3
Query: 762 CSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCF 1337
C +TVQG LL+D G VC + +PQ CC K D+ FSC C+V S CC SYE+CVSCCQDPSR + + ++V A+ P S G+ S FD CA RCR S SV HEN+YRS HCF
Sbjct: 37 CRSTVQGRYLLSDDNGHVCDALSVNPQSR-CCPE--------------KGDK------------------------------FSCHGCNVV---SECCNSYEYCVSCCQDPSRIIKEQVLEVKIAK----------------------PASAGKYSS-----VFDFCAGRCRHNSESVVHENAYRSDFHHCF 153
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A6J1IXW2_CUCMA (SREBP regulating gene protein n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1IXW2_CUCMA) HSP 1 Score: 84.3 bits (207), Expect = 2.390e-14 Identity = 66/218 (30.28%), Postives = 86/218 (39.45%), Query Frame = 3
Query: 738 RRGLGL---KGCSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPLALGMSGSQ 1382
R +GL + C +TVQG LL D G VC + DP CC G+G + P C C++ S CC SYE+CVSCCQDPSR + + +K+ A+ AG AG FD C RCR S SV HEN+YRS HCF P + G++G++
Sbjct: 27 RNNIGLVVNRSCRSTVQGRYLLTDDSGYVCDASSFDPLSR-CCL--------GKGEKFP------------------------------------CHGCNLV---SQCCNSYEYCVSCCQDPSRTKREQILKIKIAKPST-------AGTYAG--------------------VFDFCVGRCRHNSESVVHENAYRSDYHHCFSL--PSYSSGVNGTE 167
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A067CTZ4_SAPPC (SREBP regulating gene protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CTZ4_SAPPC) HSP 1 Score: 85.5 bits (210), Expect = 2.750e-14 Identity = 62/172 (36.05%), Postives = 75/172 (43.60%), Query Frame = 3
Query: 951 ARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIK--VSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCFGRFRPPLALGMSGSQG----GIAPSGERRAPP---LQLDPF 1439
+R + G PI A AFSC SC CC +YE CVSCC P + RE ++ + A HP Y G H L F CAFRCR+ S SV H+NSYRS KHC+G RP L + S G +A PP L+ DPF
Sbjct: 193 SREALLPTGCCPIAA--SAFSCTSCSAA--APHCCSAYERCVSCCMGP---DHREMVRHFLLHATPAHPVY------GAPHH-----------------LSVFGFCAFRCRSSSASVQHQNSYRSSRKHCYGLHRPTKELSVVNSDGTANKSVAFDANLPRPPTGPLEWDPF 334
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Match: A0A059AV10_EUCGR (SREBP regulating gene protein n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AV10_EUCGR) HSP 1 Score: 82.0 bits (201), Expect = 1.470e-13 Identity = 64/222 (28.83%), Postives = 81/222 (36.49%), Query Frame = 3
Query: 762 CSNTVQGVSLLADSEGRVCQRRNQDPQRPGCCATGRSLAGDGEGLELPKVDQGLRRSQQALVSARSEPITQGFPPIEAFSRAFSCWSCDVGEGGSSCCRSYEFCVSCCQDPSRAEEREAIKVSAARSGHPAYVDFGAGGVAGHPPRPLPYSPGEGESEAQLRAFDLCAFRCRTYSGSVAHENSYRSPLKHCF-------GRFRPPLALGMSGSQGGIAPSGE 1406
C NTVQG +L+D G VC + DPQ C G FSC+ C++ S CC SYE+CVSCC +PSR ++ E +KV A+ P + G S FD C RCR S SV HEN+Y S HCF G L G++G + GE
Sbjct: 39 CRNTVQGRLMLSDDNGHVCDAFSLDPQTRCCPENGEK---------------------------------------------FSCYGCNLF---SQCCNSYEYCVSCCLNPSRTQKDEVLKVKIAK----------------------PATAGTYSS-----VFDFCTGRCRHNSESVVHENAYLSEFHHCFSLPANSSGASSKSLEAGLTGINVIVGRQGE 185 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig103.15.1 >prot_A-nodosum_M_contig103.15.1 ID=prot_A-nodosum_M_contig103.15.1|Name=mRNA_A-nodosum_M_contig103.15.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=373bp MESTARFRLCHNRGPAAVEERRQAYRRAASSGRTRRRRSRRGLGRSRLFFback to top mRNA from alignment at A-nodosum_M_contig103:189751..192773+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig103.15.1 ID=mRNA_A-nodosum_M_contig103.15.1|Name=mRNA_A-nodosum_M_contig103.15.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3023bp|location=Sequence derived from alignment at A-nodosum_M_contig103:189751..192773+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig103:189751..192773+ >mRNA_A-nodosum_M_contig103.15.1 ID=mRNA_A-nodosum_M_contig103.15.1|Name=mRNA_A-nodosum_M_contig103.15.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1119bp|location=Sequence derived from alignment at A-nodosum_M_contig103:189751..192773+ (Ascophyllum nodosum dioecious)back to top |