mRNA_A-nodosum_M_contig1029.2.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 243 bits (621), Expect = 1.270e-69 Identity = 142/287 (49.48%), Postives = 183/287 (63.76%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGE-GTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCET-SGDDDLDSERDTGPQQDGASGGD----EDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYDVDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLIA+ CP+MRV L+GGQ GYGGHVVN AQ+I +LPR A ++PI+++RR+G E G H DL VRR +V AL WL AN+P+Y DI ++ L+ LP + L+ L T SG D SERD GP+ +G D EDTESF+ + G M ED I+ LR+ +R A WP ME T LNEFKT GL ++ FPALFP G GDPT ARS+ V +G +HL++++ DGRYRFA+HPRFPHW QNMLER+R+LSQA V++K + Sbjct: 170 MLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLPVDGQLRGLRTTVSGGD---SERDLGPRGEGGGEEDGDTPEDTESFM-APAGKSMLEDRAIEAALRRQVRESGADVPVNA------------WPGMEATALNEFKTTGLASMAFPALFPWGKGDPTDPARSRSVKPTDGMRHLLKFF----RDGRYRFASHPRFPHWCQNMLERHRMLSQAQVYLKQN 436
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9LY68_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LY68_PARCT) HSP 1 Score: 216 bits (551), Expect = 4.070e-62 Identity = 120/283 (42.40%), Postives = 170/283 (60.07%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+MRVYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR G E TH+D VRR KVF+A+ WL+ N+PF+ +I I+ D + SLP+N +L +++ + GP QD + E V+G+G + I + QR+ A + + WP E +NEFKT GL T+ FP LFP G GDPT+ AR +T E FKHLM++ + + D +RFA+HPRFP+WA NM +R++LLSQANV+++ H Sbjct: 200 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHLDFTVRRHKVFEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENEHSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNRVNEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAEKLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 470
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT) HSP 1 Score: 215 bits (548), Expect = 6.780e-62 Identity = 121/283 (42.76%), Postives = 170/283 (60.07%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+MRVYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR G E TH D VRR KV +A+ WL+ N+PF+ +I I+ D + SLP+N +L +++L + GP QD + E V+G+G M + QR+ A + S+ + WP E +NEFKT GL T+ FP LFP G GDPT+ AR +T E FKHLM++ + + D +RFA+HPRFP+WA NM +R++LLSQANV+++ H Sbjct: 342 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPHELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGSGSTSFI-------PMRQRQRKEGAAIQDAVSEV--DPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAERLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 612
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT) HSP 1 Score: 215 bits (547), Expect = 1.230e-61 Identity = 120/283 (42.40%), Postives = 169/283 (59.72%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+MRVYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR G E TH D VRR KV +A+ WL+ N+PF+ +I I+ D + SLP+N +L +++L + GP QD + E V+G+G + I + QR+ A + + WP E +NEFKT GL T+ FP LFP G GDPT+ AR +T E FKHLM++ + + D +RFA+HPRFP+WA NM +R++LLSQANV+++ H Sbjct: 185 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAERLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 455
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A6S7I194_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I194_PARCT) HSP 1 Score: 217 bits (552), Expect = 2.210e-60 Identity = 121/283 (42.76%), Postives = 169/283 (59.72%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+MRVYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR G E TH D VRR KV +A+ WL+ N+PF+ +I I+ D + SLP+N +L +++L + GP QD + E V+GNG + I + QR+ A + + WP E +NEFKT GL T+ FP LFP G GDPT+ AR +T E FKHLM++ + + D +RFA+HPRFP+WA NM +R++LLSQANV+++ H Sbjct: 339 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGNG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAERLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 609
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9EWD8_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EWD8_PARCT) HSP 1 Score: 216 bits (551), Expect = 2.740e-60 Identity = 120/283 (42.40%), Postives = 170/283 (60.07%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+MRVYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR G E TH+D VRR KVF+A+ WL+ N+PF+ +I I+ D + SLP+N +L +++ + GP QD + E V+G+G + I + QR+ A + + WP E +NEFKT GL T+ FP LFP G GDPT+ AR +T E FKHLM++ + + D +RFA+HPRFP+WA NM +R++LLSQANV+++ H Sbjct: 187 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHLDFTVRRHKVFEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVIDENEHSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNRVNEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAEKLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 457
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: UPI00106D8CF5 (uncharacterized protein LOC114518658 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8CF5) HSP 1 Score: 214 bits (545), Expect = 3.320e-60 Identity = 118/284 (41.55%), Postives = 173/284 (60.92%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDL--DSERDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+M+VYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR+G + TH D VRR KVF+A+ WL+ N+PF+ DI I+ D + SLP+N ++L D +L +E + PQ+ S + V+GNG + I + QR+ A + + WP E +NEFKT GL ++ FP LFP G GDPT+ R +V+ AE FKHLM++ + + + +RFA+HPRFP+WA NM +R++LLSQAN++++ H Sbjct: 279 MLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPEELRYVIDDQELLVHAENEGPPQEPEMSA----NATVEELVLGNG--STSFIPM-------RQRQRKDGAAIQDAVNEVDPLDWPSTEGNAVNEFKTDGLASMAFPTLFPHGRGDPTNRVRQHEVSLAEAFKHLMKFAERLPNGKFEWRFASHPRFPYWALNMKQRHQLLSQANIYLRQH 549
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8) HSP 1 Score: 211 bits (538), Expect = 1.140e-59 Identity = 116/283 (40.99%), Postives = 171/283 (60.42%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+M+VYR GGQRGY GHV+N Q+I F+N LP +LP+++VRRQG + TH D VRR +V +A+ WL+ N+PF+ DI I+ D + SLP+N ++L D++L + GP Q+ + E V+GNG + I + QR+ A + + WP E +NEFKT GL ++ FP LFP G DPT+ R +V+ AE FKHLM++ + + + +RFA+HPRFP+WA NM +R++LLSQAN++++ H Sbjct: 359 MLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPKELRYVIDDNELSVHVENEGPPQEPVMSANATVEEL---VLGNG--STSFIPM-------RQRQRKDGAAIQDAVNEVDPLDWPSTEGNAVNEFKTDGLASMAFPTLFPYGRSDPTNRVRQHEVSLAEAFKHLMKFAERLPNGKFEWRFASHPRFPYWALNMKQRHQLLSQANIYLRQH 629
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: A0A7D9IBF1_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IBF1_PARCT) HSP 1 Score: 209 bits (533), Expect = 6.050e-58 Identity = 118/283 (41.70%), Postives = 167/283 (59.01%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSE-RDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+MRVYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR G E TH D VRR K +A+ L+ N+PF+ +I I+ D + SLP+N +L +++L + GP QD + E V+G+G + I + QR+ A + + WP E +NEFKT GL T+ FP LFP G GDPT+ AR +T E FKHLM++ + + D +RFA+HPRFP+WA NM +R++LLSQANV+++ H Sbjct: 187 MLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKALEAVLCLKTNNPFFKNIEIDRDGIQSLPENGIPDELRYVIDENELSVHVENEGPPQDPVMSANASVEEL---VLGSG--STSFIPM-------RQRQRKEGAAIQDAVNEVDPLDWPSTEGNLINEFKTDGLATMAFPTLFPYGKGDPTNRARQHGITLTEAFKHLMKFAESLADGKFEWRFASHPRFPYWALNMKQRHQLLSQANVYLRQH 457
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Match: UPI001069E820 (uncharacterized protein LOC114526754 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069E820) HSP 1 Score: 208 bits (529), Expect = 2.080e-57 Identity = 112/282 (39.72%), Postives = 161/282 (57.09%), Query Frame = 1 Query: 1 MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVVVRRQGGEGTHIDLLVRRQKVFDALNWLRANSPFYSDISINTDNLNSLPDNDSLQDLCETSGDDDLDSERDTGPQQDGASGGDEDTESFLRSVVGNGMQEDAIIDLLLRKMLRAQRRSTVAGAGSRSQTTASAIPWPKMEDTPLNEFKTQGLCTLCFPALFPCGCGDPTHVARSKKVTNAEGFKHLMRYYD-VDDSDGRYRFATHPRFPHWAQNMLERYRLLSQANVFVKHH 843 MLI++ CP+M+VYR GGQRGY GHV+N Q+I F+N LP +LP+++VRR+G + TH D VRR KVF+A+ WL+ N+PF+ DI I+ D + SLP+N+ T V+GNG + I + QR+ A + + WP E +NEFKT GL ++ FP LFP G GDPT+ R +V+ AE FKHLM++ + + + +RFA+HPRFP+WA NM +R++LLSQAN++++ H Sbjct: 279 MLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENEPEMSANAT----------------------------VEELVLGNG--STSFIPM-------RQRQRKDGAAIQDAVNEVDPLDWPSTEGNAVNEFKTDGLASMAFPTLFPHGKGDPTNRVRQHEVSLAEAFKHLMKFAERLPNGKFEWRFASHPRFPYWALNMKQRHQLLSQANIYLRQH 523 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1029.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1029.2.1 >prot_A-nodosum_M_contig1029.2.1 ID=prot_A-nodosum_M_contig1029.2.1|Name=mRNA_A-nodosum_M_contig1029.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=282bp MLIAKGCPVMRVYRLEGGQRGYGGHVVNFAQNIGDFVNSLPRPARELPIVback to top mRNA from alignment at A-nodosum_M_contig1029:271559..272404+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1029.2.1 ID=mRNA_A-nodosum_M_contig1029.2.1|Name=mRNA_A-nodosum_M_contig1029.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:271559..272404+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1029:271559..272404+ >mRNA_A-nodosum_M_contig1029.2.1 ID=mRNA_A-nodosum_M_contig1029.2.1|Name=mRNA_A-nodosum_M_contig1029.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at A-nodosum_M_contig1029:271559..272404+ (Ascophyllum nodosum dioecious)back to top |