mRNA_A-nodosum_M_contig1028.11.2 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: D7G0E5_ECTSI (Nuclear transport factor 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0E5_ECTSI) HSP 1 Score: 214 bits (544), Expect = 8.790e-65 Identity = 105/124 (84.68%), Postives = 112/124 (90.32%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIYS 372 MSGE+VAKAF+ HFYSKF GAQLDQLGALYQPTSMLTIE NQVVG+ NIVAKYK LGGNLQF PDTLDVQMGTT +AL+AVVTG LKIDNGN LHYLQ+FQLVSTGP AYYVHND+LRLIYS Sbjct: 1 MSGEEVAKAFLTHFYSKFANNGAQLDQLGALYQPTSMLTIEGNQVVGATNIVAKYKDLGGNLQFQPDTLDVQMGTTTSALLAVVTGKLKIDNGNQLHYLQMFQLVSTGPGAYYVHNDILRLIYS 124
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A7S0BUK2_9STRA (Nuclear transport factor 2 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BUK2_9STRA) HSP 1 Score: 125 bits (313), Expect = 7.250e-31 Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E+VAKAFVQHFY+ F +D L LYQP+SMLT E NQV+GS I+ K K++G + +LDVQ + +++I VTG + I NPLH+ ++FQLVSTGP AYYVHN+V RL Y Sbjct: 1 MSAEEVAKAFVQHFYNAFDTN---VDSLSGLYQPSSMLTFEGNQVLGSEAIIGKLKSVG-KVNHQVKSLDVQPSNSASSIICFVTGIISIGGDNPLHFCEMFQLVSTGPGAYYVHNNVFRLNY 119
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A7S3L787_9STRA (Nuclear transport factor 2 (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L787_9STRA) HSP 1 Score: 125 bits (313), Expect = 7.470e-31 Identity = 66/123 (53.66%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E+VAKAFVQHFY + + AQL +LY P SMLT E Q +GS I+ K ++G +Q ++DVQ A+I VTG ++ID GNPLH+ +VFQLVSTGP AYYVHNDV RL Y Sbjct: 2 MSAEEVAKAFVQHFYGAYASNPAQL---ASLYSPNSMLTFEGQQHMGSEAIIGKLTSVG-KVQHDVKSMDVQPSQNPQAMIIFVTGTVRIDGGNPLHFCEVFQLVSTGPGAYYVHNDVFRLNY 120
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A6U3TR09_9STRA (Nuclear transport factor 2 n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TR09_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.010e-29 Identity = 64/123 (52.03%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E+VAKAFVQHFY+ F +D L LY P SMLT E NQV G I+ K K++G ++ ++DVQ + +A+I VTG+++I NPLH+ + FQLVSTGP AYYVHNDV RL Y Sbjct: 1 MSAEEVAKAFVQHFYNAFDTN---VDGLAGLYSPQSMLTFEGNQVGGKDAIMGKLKSIG-TVKHEIKSMDVQPSSNQSAIIIFVTGSIRIGGDNPLHFCEFFQLVSTGPGAYYVHNDVFRLNY 119
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A836CA84_9STRA (Nuclear transport factor 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA84_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.360e-29 Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIYS 372 MS E+VAKAF QHFY FTA L LY SMLT E VG+ I+ KY ++G L F +TLDVQ A+ +TG +KID+ NP+HY Q FQLV++GP YYVHND+ RL+Y+ Sbjct: 1 MSAEEVAKAFAQHFYQTFTANA---QSLAPLYNDRSMLTFEGQASVGAQAIIQKYVSIG-KLAFDQNTLDVQPSVDANAICIHITGKVKIDSNNPIHYTQFFQLVASGPSQYYVHNDIFRLVYA 120
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A7S1ZBV8_TRICV (Nuclear transport factor 2 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBV8_TRICV) HSP 1 Score: 115 bits (287), Expect = 3.670e-27 Identity = 63/123 (51.22%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E+VAKAFVQHFY+ F A D L +LY SMLT E Q GS IVAK + G ++ ++DVQ ++ A++ VTG ++I NPLH+ ++FQLVSTGP AYYVHNDV RL Y Sbjct: 1 MSAEEVAKAFVQHFYTTFDASA---DGLASLYNAQSMLTFEGQQHQGSEAIVAKLRGCGP-VKHVAKSMDVQPSSSQNAILIFVTGTIQIGGDNPLHFCEMFQLVSTGPGAYYVHNDVFRLNY 119
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: B8C3C1_THAPS (Nuclear transport factor 2 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3C1_THAPS) HSP 1 Score: 113 bits (282), Expect = 1.870e-26 Identity = 60/123 (48.78%), Postives = 75/123 (60.98%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E+VAKAFV HFY F G +D L LY P+SMLT E QV GS I+AK + +G ++ T D+Q A++ VTG ++I NPLH+ + F LV TGP YYVHNDV RL Y Sbjct: 1 MSAEEVAKAFVAHFYQAFDTG---VDGLAGLYSPSSMLTFEGQQVQGSEAIIAKLRGVG-QVKHQVKTTDIQPSNDPNAIVIFVTGAIQIGGDNPLHFCEFFHLVGTGPGQYYVHNDVFRLNY 119
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A7S1FRI8_9STRA (Nuclear transport factor 2 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRI8_9STRA) HSP 1 Score: 112 bits (280), Expect = 3.810e-26 Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS ++VAKAFV HFY+ F G +DQL +LYQPTSMLT E Q+ G I+AK+K +G ++ +D Q A++ VTG++KI N +H+ ++FQL+STGP AY+VHN++ RL Y Sbjct: 1 MSADEVAKAFVAHFYNTFDVAGG-VDQLRSLYQPTSMLTFEGQQMQGPDAILAKFKGVG-EVKHTITNVDCQPSNNPNAILIFVTGSVKIGGPNAVHFCEMFQLLSTGPGAYHVHNEIFRLNY 121
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: B7G8V7_PHATC (Nuclear transport factor 2 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G8V7_PHATC) HSP 1 Score: 112 bits (279), Expect = 4.980e-26 Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E++A+AFV HFY+ F +D L +L+QP+SM++ E Q G NI+ K K G +Q + DVQ + A++ VTG++KI NPLH+ ++FQLVST P AYYVHND+ RL Y Sbjct: 1 MSAEEIAQAFVGHFYNSFDTN---VDSLASLFQPSSMMSFEGQQFQGPENIINKLKGTG-QVQHTVKSTDVQPSSNPNAILIFVTGSIKIGGDNPLHFCEMFQLVSTAPGAYYVHNDIFRLNY 119
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Match: A0A7S4MNW5_9STRA (Nuclear transport factor 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MNW5_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.320e-25 Identity = 60/123 (48.78%), Postives = 76/123 (61.79%), Query Frame = 1 Query: 1 MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANIVAKYKTLGGNLQFHPDTLDVQMGTTNTALIAVVTGNLKIDNGNPLHYLQVFQLVSTGPQAYYVHNDVLRLIY 369 MS E+VAKAF HFY F AG L LY SMLT E Q G+ ++AK + G +Q ++DVQ + +A++ VTG +KI NPLH+ ++FQLVSTGP AYYVHNDV RL Y Sbjct: 1 MSAEEVAKAFTAHFYQTFDAGA---QGLAGLYNEQSMLTFEGQQHQGAQAVIAKLQGCGP-VQHVVKSMDVQPSSNQSAILIFVTGTIKIGGDNPLHFCEMFQLVSTGPGAYYVHNDVFRLNY 119 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1028.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1028.11.2 >prot_A-nodosum_M_contig1028.11.2 ID=prot_A-nodosum_M_contig1028.11.2|Name=mRNA_A-nodosum_M_contig1028.11.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp MSGEDVAKAFVQHFYSKFTAGGAQLDQLGALYQPTSMLTIESNQVVGSANback to top mRNA from alignment at A-nodosum_M_contig1028:180377..183719- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1028.11.2 ID=mRNA_A-nodosum_M_contig1028.11.2|Name=mRNA_A-nodosum_M_contig1028.11.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3343bp|location=Sequence derived from alignment at A-nodosum_M_contig1028:180377..183719- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1028:180377..183719- >mRNA_A-nodosum_M_contig1028.11.2 ID=mRNA_A-nodosum_M_contig1028.11.2|Name=mRNA_A-nodosum_M_contig1028.11.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig1028:180377..183719- (Ascophyllum nodosum dioecious)back to top |