mRNA_A-nodosum_M_contig10278.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10278.4.1
Unique NamemRNA_A-nodosum_M_contig10278.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: D7FNM6_ECTSI (ABC transporter-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM6_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.210e-33
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA ID +PVAVKVQRPDLLE VGLDF++ARR+A  + RLSR  SFFGGRL VRSDLVAAVDEY SRLFEELDYRKE
Sbjct:  181 VYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKE 258          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A6H5L3N2_9PHAE (ABC1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N2_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.030e-31
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA I+ +PVAVKVQRPDLLE VGLDF++ARR+A  + RLSR  SFFGGRL VRSDLVAAVDEY SRLFEELDYRKE
Sbjct:  170 VYKAQINGRPVAVKVQRPDLLEAVGLDFYVARRVADAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKE 247          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A9BL31_HEMAN (Kin(ABC1) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL31_HEMAN)

HSP 1 Score: 75.1 bits (183), Expect = 5.440e-14
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA +D   VAVKVQRP LLE++ LD F+ R +A    ++ +          VR+DLVA +DEYA RLFEELDYRKE
Sbjct:  388 VYKATLDGIQVAVKVQRPGLLELIALDIFVIRFLADMTQKVFK----------VRTDLVAIIDEYAERLFEELDYRKE 455          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: J7G6I5_9CRYP (ABC1 family protein n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G6I5_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 8.000e-12
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA +D   VA+KVQRP L E++ LD  + R ++         +SF      +R+DLVA VDEYA RLFEELDYRKE
Sbjct:  394 VYKANLDGMQVAIKVQRPGLSEMIALDILIIRFLS-----FILQKSF-----KIRTDLVAIVDEYAQRLFEELDYRKE 461          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A7J7IQA4_9RHOD (Protein kinase domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQA4_9RHOD)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-11
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA +D   +AVKVQRP ++E + LDFF+ R +         G  +     A R+DLV A+DEYASRLFEE DY  E
Sbjct:  329 VYKASLDGVDLAVKVQRPGIVERIALDFFVVRML---------GELWMHSPWAPRTDLVEAIDEYASRLFEETDYGHE 397          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A6H5KUQ1_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUQ1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 7.130e-11
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 VYKAWI--DEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA +  + +PVAVKVQRP +LE V LD  LAR +   + ++          LA R+DLVA +DE+ASR F+ELDY KE
Sbjct:  332 VYKATLRSNGKPVAVKVQRPGVLETVSLDLHLARELGYQMKKIPF--------LAERTDLVALLDEFASRFFDELDYVKE 403          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A351L2K9_9CYAN (Protein kinase domain-containing protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A351L2K9_9CYAN)

HSP 1 Score: 65.9 bits (159), Expect = 9.610e-11
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 VYKAWIDE-QPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYK  +   + VAVKVQRPDL + + LD ++ARR+AA      +GR        ++SDLVA +DE+ SR+FEE+DY  E
Sbjct:  182 VYKGKLKTGETVAVKVQRPDLAQKITLDLYIARRLAAWAQNTFKGR--------LKSDLVAILDEFGSRIFEEMDYIHE 252          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A7S0QVV8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QVV8_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 9.640e-11
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA +  +PVAVKVQRP L E++  D  L R  A+ V     G     G+  VR++ VAAVDE+ SRLFEELD+  E
Sbjct:  317 VYKAVVGGRPVAVKVQRPGLREMIAADARLLRLGASAV----EGIQGADGQRIVRAEAVAAVDEFCSRLFEELDFENE 390          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A6T6CQ29_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CQ29_9RHOD)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYK  +D   VA+KVQRP ++E + LDF + R+I   V RL          +  R+ +V A+DEYAS LFEELDYR E
Sbjct:  156 VYKGSLDGVQVAIKVQRPGIVEQIALDFHVVRQIMLLVNRL----------IESRTGIVGALDEYASSLFEELDYRNE 223          
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Match: A0A5J4YTY6_PORPP (Putative aarF domain-containing protein kinase, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTY6_PORPP)

HSP 1 Score: 65.5 bits (158), Expect = 1.340e-10
Identity = 39/78 (50.00%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGGRLAVRSDLVAAVDEYASRLFEELDYRKE 234
            VYKA +D   VAVK+QRP ++EVV LDF + R +A          S F     V  DL   VD+YASRLFEELDY +E
Sbjct:  490 VYKAKLDGIDVAVKIQRPGIVEVVALDFHVIRNVAEFAT------SVFPFSTLVPPDLCDIVDDYASRLFEELDYVQE 561          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10278.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM6_ECTSI2.210e-3380.77ABC transporter-like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L3N2_9PHAE1.030e-3179.49ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A9BL31_HEMAN5.440e-1453.85Kin(ABC1) n=2 Tax=Hemiselmis andersenii TaxID=4649... [more]
J7G6I5_9CRYP8.000e-1251.28ABC1 family protein n=1 Tax=Chroomonas mesostigmat... [more]
A0A7J7IQA4_9RHOD2.050e-1148.72Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A6H5KUQ1_9PHAE7.130e-1150.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A351L2K9_9CYAN9.610e-1146.84Protein kinase domain-containing protein n=3 Tax=C... [more]
A0A7S0QVV8_9CHLO9.640e-1150.00Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A6T6CQ29_9RHOD1.320e-1047.44Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YTY6_PORPP1.340e-1050.00Putative aarF domain-containing protein kinase, ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10278contigA-nodosum_M_contig10278:8216..8455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FNM6
PFAMsABC1,APH,DCP2,NUDIX
Model size242
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.62e-34
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size240
COG categoryE
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.5799506-CDS-A-nodosum_M_contig10278:8215..84551680866392.5799506-CDS-A-nodosum_M_contig10278:8215..8455Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 8216..8455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10278.4.1prot_A-nodosum_M_contig10278.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10278 8216..8455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10278.4.1

>prot_A-nodosum_M_contig10278.4.1 ID=prot_A-nodosum_M_contig10278.4.1|Name=mRNA_A-nodosum_M_contig10278.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
VYKAWIDEQPVAVKVQRPDLLEVVGLDFFLARRIAAGVVRLSRGRSFFGG
RLAVRSDLVAAVDEYASRLFEELDYRKEV*
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mRNA from alignment at A-nodosum_M_contig10278:8216..8455+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10278.4.1 ID=mRNA_A-nodosum_M_contig10278.4.1|Name=mRNA_A-nodosum_M_contig10278.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:8216..8455+ (Ascophyllum nodosum dioecious)
GTGTACAAAGCCTGGATAGACGAGCAGCCGGTCGCGGTGAAAGTACAGAG ACCGGACCTGCTGGAGGTTGTGGGGCTCGACTTTTTCTTGGCGCGCAGGA TCGCGGCTGGCGTCGTTCGCTTGTCGCGGGGTCGGTCGTTCTTCGGGGGC AGGCTCGCCGTGCGCAGCGATCTCGTGGCTGCCGTCGACGAGTACGCTTC TAGGCTGTTCGAGGAGCTGGACTACAGGAAAGAGGTCTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10278:8216..8455+

>mRNA_A-nodosum_M_contig10278.4.1 ID=mRNA_A-nodosum_M_contig10278.4.1|Name=mRNA_A-nodosum_M_contig10278.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:8216..8455+ (Ascophyllum nodosum dioecious)
GTGTACAAAGCCTGGATAGACGAGCAGCCGGTCGCGGTGAAAGTACAGAG
ACCGGACCTGCTGGAGGTTGTGGGGCTCGACTTTTTCTTGGCGCGCAGGA
TCGCGGCTGGCGTCGTTCGCTTGTCGCGGGGTCGGTCGTTCTTCGGGGGC
AGGCTCGCCGTGCGCAGCGATCTCGTGGCTGCCGTCGACGAGTACGCTTC
TAGGCTGTTCGAGGAGCTGGACTACAGGAAAGAGGTCTGA
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