mRNA_A-nodosum_M_contig10278.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10278.3.1
Unique NamemRNA_A-nodosum_M_contig10278.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: D7FNM6_ECTSI (ABC transporter-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.420e-37
Identity = 80/125 (64.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query:    1 ILLEAGGVLLALAGDKISTLARKDTDMDI-VSSGKVVPRRATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            IL+E  GVLLAL  D +  ++  DTD  I V +G+      T  +IR +VTRLGPNFVKIGQALASRPD VGEAIAGELLLLQDAMP FSN+VA   I +ELG  PED FE +G  PVAAASLGQ
Sbjct:   58 ILVEVCGVLLALGMDYL--VSGNDTDTGIRVPTGEAEAGGNTPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARRFIHEELGGYPEDIFEAMGDTPVAAASLGQ 180          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A6H5L3N2_9PHAE (ABC1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.160e-32
Identity = 78/124 (62.90%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 ILLEAGGVLLALAGDKISTLARKDTDMDIVSSGKVVPRRATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            IL+E  GVLLAL  D +  ++  D D     +G  +P R     IR +VTRLGPNFVKIGQALASRPD VGEAIAGELLLLQDAMP FSN+VA   I +ELG  PED FE +G  PVAAASLGQ
Sbjct:   58 ILVEVCGVLLALGMDYL--VSGNDAD-----TGIRMPTR-----IRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARRFIYEELGDYPEDIFESMGDTPVAAASLGQ 169          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A835YQ71_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ71_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.220e-23
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  124 AEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            A ++R A+TRLGP F+K+GQAL+SRPD V E    EL LLQDA+P F N VA  L+R+ELGA PE  F+ I  EPVAAASLGQ
Sbjct:   96 ATELREAITRLGPAFIKLGQALSSRPDLVDEQTMAELSLLQDALPFFPNGVARALVREELGAYPERLFDEISAEPVAAASLGQ 178          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A1E5QZL9_9CHRO (Protein kinase domain-containing protein n=3 Tax=Cyanobacterium TaxID=102234 RepID=A0A1E5QZL9_9CHRO)

HSP 1 Score: 100 bits (248), Expect = 4.780e-22
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  124 AEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            AEK+R+ +TRLGP ++KIGQAL++RPD V  A   EL  LQD +PPF N++A + I +ELG++PE+ ++ I   P+AAASLGQ
Sbjct:   99 AEKLRKILTRLGPAYIKIGQALSTRPDLVSPAYLEELTSLQDQLPPFPNEIAYQFIEEELGSKPEEVYQEITPNPIAAASLGQ 181          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: UPI0016823148 (AarF/ABC1/UbiB kinase family protein n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI0016823148)

HSP 1 Score: 99.4 bits (246), Expect = 8.940e-22
Identity = 48/94 (51.06%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   94 SGKVVPRR-ATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            +G++V  + A AE++R+ +T+LGP F+KIGQAL++RPD V      EL  LQD +PPF+NK+A + I +ELGA P++ +  +  EPVAAASLGQ
Sbjct:  110 TGRLVKNQPARAEQLRKMLTQLGPAFIKIGQALSTRPDLVPPGYLEELAKLQDQLPPFANKIAYQFIEEELGAHPDEIYAELSLEPVAAASLGQ 203          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A6P0RWV4_9CYAN (AarF/ABC1/UbiB kinase family protein (Fragment) n=2 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0RWV4_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 2.930e-21
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  115 RATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            R  A ++R  +TRLGP ++K+GQAL++RPD V +    EL LLQD +PPF N+VA + I +ELGA P+D +  +  +PVAAASLGQ
Sbjct:   56 RRRAIQLREILTRLGPAYIKVGQALSTRPDLVSQVYLEELALLQDQLPPFPNEVAFQFIEEELGAPPDDIYMELTSQPVAAASLGQ 141          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: UPI0003474DE7 (AarF/ABC1/UbiB kinase family protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI0003474DE7)

HSP 1 Score: 97.8 bits (242), Expect = 3.030e-21
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1
Query:  124 AEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            A ++R  +T LGP ++KIGQAL++RPD V      EL  LQD +PPFSN VA +LI ++LGA+P++ F+R+   P+AAASLGQ
Sbjct:   93 AIRLREILTELGPAYIKIGQALSTRPDLVSPVFLEELTKLQDQLPPFSNAVAYQLIEEQLGAKPDEIFQRLSSNPIAAASLGQ 175          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A3C0NBB6_9CYAN (Protein kinase domain-containing protein n=1 Tax=Cyanobacteria bacterium UBA8543 TaxID=2055766 RepID=A0A3C0NBB6_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 3.090e-21
Identity = 47/97 (48.45%), Postives = 64/97 (65.98%), Query Frame = 1
Query:   82 DIVSSGKVVPRRATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            D V    V+  R  A ++R+ +T LGP ++K+GQAL++RPD V      EL LLQD +PPF N+VA   I +ELG RPE+ +  +  +PVAAASLGQ
Sbjct:   95 DRVRGRSVINERRRAAQLRKLLTNLGPAYIKVGQALSTRPDLVPPIFLDELSLLQDQLPPFPNEVAYRFIEEELGDRPEEIYAELTAQPVAAASLGQ 191          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A252EB57_9NOSO (Protein kinase domain-containing protein n=20 Tax=Nostocales TaxID=1161 RepID=A0A252EB57_9NOSO)

HSP 1 Score: 97.8 bits (242), Expect = 3.090e-21
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  115 RATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            R  A ++R  +TRLGP ++KIGQAL++RPD V  A   EL  LQD +PPF N++A + I++ELGA PE+ +  +  EP+AAASLGQ
Sbjct:  116 RRRAAQLRELLTRLGPAYIKIGQALSTRPDLVPPAFLEELTKLQDQLPPFPNEIAYQFIKEELGAPPEEIYSELSPEPIAAASLGQ 201          
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Match: A0A6P0V812_9CYAN (AarF/ABC1/UbiB kinase family protein n=4 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0V812_9CYAN)

HSP 1 Score: 97.8 bits (242), Expect = 3.100e-21
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  115 RATAEKIRRAVTRLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQELGARPEDCFERIGGEPVAAASLGQ 372
            R  A ++R  +TRLGP ++K+GQAL++RPD V +    EL LLQD +PPF N+VA + I +ELGA P+D +  +  +PVAAASLGQ
Sbjct:  107 RRRAIQLREILTRLGPAYIKVGQALSTRPDLVSQVYLEELALLQDQLPPFPNEVAFQFIEEELGAPPDDIYMELTSQPVAAASLGQ 192          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10278.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM6_ECTSI3.420e-3764.00ABC transporter-like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L3N2_9PHAE1.160e-3262.90ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQ71_9STRA1.220e-2362.65ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A1E5QZL9_9CHRO4.780e-2254.22Protein kinase domain-containing protein n=3 Tax=C... [more]
UPI00168231488.940e-2251.06AarF/ABC1/UbiB kinase family protein n=2 Tax=uncla... [more]
A0A6P0RWV4_9CYAN2.930e-2152.33AarF/ABC1/UbiB kinase family protein (Fragment) n=... [more]
UPI0003474DE73.030e-2153.01AarF/ABC1/UbiB kinase family protein n=1 Tax=Synec... [more]
A0A3C0NBB6_9CYAN3.090e-2148.45Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A252EB57_9NOSO3.090e-2152.33Protein kinase domain-containing protein n=20 Tax=... [more]
A0A6P0V812_9CYAN3.100e-2152.33AarF/ABC1/UbiB kinase family protein n=4 Tax=Oscil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10278contigA-nodosum_M_contig10278:7078..7828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNM6
PFAMsABC1,APH,DCP2,NUDIX
Model size375
Max annot lvl2759|Eukaryota
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.61e-38
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Descriptionregulation of tocopherol cyclase activity
Cds size372
COG categoryE
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866392.545006-CDS-A-nodosum_M_contig10278:7077..73741680866392.545006-CDS-A-nodosum_M_contig10278:7077..7374Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 7078..7374 +
1680866392.5553648-CDS-A-nodosum_M_contig10278:7751..78261680866392.5553648-CDS-A-nodosum_M_contig10278:7751..7826Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10278 7752..7826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10278.3.1prot_A-nodosum_M_contig10278.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10278 7078..7826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10278.3.1

>prot_A-nodosum_M_contig10278.3.1 ID=prot_A-nodosum_M_contig10278.3.1|Name=mRNA_A-nodosum_M_contig10278.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
ILLEAGGVLLALAGDKISTLARKDTDMDIVSSGKVVPRRATAEKIRRAVT
RLGPNFVKIGQALASRPDFVGEAIAGELLLLQDAMPPFSNKVAMELIRQE
LGARPEDCFERIGGEPVAAASLGQ
back to top

mRNA from alignment at A-nodosum_M_contig10278:7078..7828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10278.3.1 ID=mRNA_A-nodosum_M_contig10278.3.1|Name=mRNA_A-nodosum_M_contig10278.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=751bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:7078..7828+ (Ascophyllum nodosum dioecious)
ATCTTGCTCGAAGCCGGAGGGGTGCTACTCGCGTTGGCGGGCGACAAGAT TTCGACCTTAGCGAGGAAGGATACCGACATGGATATCGTCTCTAGTGGCA AGGTCGTGCCGCGTCGGGCAACAGCGGAGAAAATTCGTCGGGCGGTCACT CGCCTGGGGCCCAACTTTGTCAAGATAGGGCAAGCGCTGGCATCAAGGCC AGACTTCGTGGGAGAAGCCATCGCCGGGGAGCTGCTGCTGTTGCAGGACG CGATGCCGCCCTTTTCGAACAAGGTCGCGATGGAACTGATTCGCCAGGTA GCGTTACATCCTGCAGTGCCACGTACATCTGTATCCTGCATCCTGCGTGT CGCTCTCCTGGCTTAAACCCTCAAGACCGGCGGGTAGAGGATGGTGAGGG ATATAAATATAATCTAAATCTGGCACACTCTCGCGTGAGGTAAAGCGATA CCATGAGTTGAGATCCTGATATCCTGCCCCCCCCTTCATCATGCTGCGAC GCGCCTCGACCGCTCCAGCCTTGGCTTCGACAAAGCTTATCCTCCATCTA GATGCAAAAAGCGCGTGGGCGATGTCCTTCACCTATCTGTGATAAATCCG AGCGCTAGAAGAGTGTAGTGTGACATACACCGCGCGTAAGAAAACCTCTT AGACTGCTCTTCTGCCATCCGCAGGAGCTCGGAGCTCGGCCCGAGGATTG CTTCGAACGTATCGGTGGCGAGCCCGTGGCAGCCGCGAGCTTGGGCCAGG T
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10278:7078..7828+

>mRNA_A-nodosum_M_contig10278.3.1 ID=mRNA_A-nodosum_M_contig10278.3.1|Name=mRNA_A-nodosum_M_contig10278.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig10278:7078..7828+ (Ascophyllum nodosum dioecious)
ATCTTGCTCGAAGCCGGAGGGGTGCTACTCGCGTTGGCGGGCGACAAGAT
TTCGACCTTAGCGAGGAAGGATACCGACATGGATATCGTCTCTAGTGGCA
AGGTCGTGCCGCGTCGGGCAACAGCGGAGAAAATTCGTCGGGCGGTCACT
CGCCTGGGGCCCAACTTTGTCAAGATAGGGCAAGCGCTGGCATCAAGGCC
AGACTTCGTGGGAGAAGCCATCGCCGGGGAGCTGCTGCTGTTGCAGGACG
CGATGCCGCCCTTTTCGAACAAGGTCGCGATGGAACTGATTCGCCAGGAG
CTCGGAGCTCGGCCCGAGGATTGCTTCGAACGTATCGGTGGCGAGCCCGT
GGCAGCCGCGAGCTTGGGCCAG
back to top