mRNA_A-nodosum_M_contig1027.2.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: D7FT95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT95_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 2.780e-19 Identity = 55/133 (41.35%), Postives = 77/133 (57.89%), Query Frame = 3 Query: 240 LTRAGSLRCLDVFSIALNQADSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLEN-APASDTQ-VKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKV-NDVVWPSSL 629 L RAG RCLD IALNQA WY+ST+QLQLASL+ C CRS+ L + ++ G T L A +T+ VK+ TRVP ++ +TW+LPG L+ + +A +V + G F+D + + WP L Sbjct: 4 LARAGPSRCLDALIIALNQASGGEWYTSTMQLQLASLELCASCRSMHLLKLNVQHGTPTRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGLALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKL 136
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 6.500e-17 Identity = 48/124 (38.71%), Postives = 70/124 (56.45%), Query Frame = 3 Query: 264 CLDVFSIALNQA-DSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKVNDVVWPSSLR 632 CL+ +ALN+ D WY+ST +LQLASL FC+ CR+ T+H+ + + + LL +A A K+L TRVP ++ +TW +P + A+ +E L FGD F D + V WP LR Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLR 174
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 3.110e-16 Identity = 52/138 (37.68%), Postives = 75/138 (54.35%), Query Frame = 3 Query: 225 AGRMELTRAGSLRCLDVFSIALNQADSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLEN-APASDTQ-VKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKV-NDVVWPSSL 629 +GR G RCLD IALNQA WY+ST+QLQL SL+ C CRS+ L + ++ G L A +T+ VK+ TRVP ++ +TW+LPG L+ + +A +V + G F+D + + WP L Sbjct: 30 SGRHTNVETGPSRCLDALIIALNQASGGEWYTSTMQLQLTSLELCAACRSMHLLKLNVQHGTPPRLWRGTATTRETRSVKRRNVTRVPVVRARTVTWKLPGVALRNMTGDAWSEVTTFSLGPGFDDDLPRGIQWPEKL 167
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5KMU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU8_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.600e-15 Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 3 Query: 270 DVFSIALNQADS-SGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVK--KLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKVNDVVWPSSLRR 635 D IALNQ +GWY+S LQLQLASLQ C+ CR V T H+ ++ + LL ++ A T+ + L ++RVP ++P +TW L ++ +A V+ L FGD F+ +V+ V WP L++ Sbjct: 17 DALDIALNQVSGVNGWYTSKLQLQLASLQLCLACRRVPTSHLTVERDVLALLWPHSAAEATRSRLVSLGQSRVPALRPRKVTWNLATLSMR-HCGDAFESVDVLVFGDSFDYRVDRVTWPPGLKK 140
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 4.460e-15 Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3 Query: 252 GSLRCLDVFSIALNQA-DSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLEN---APASDTQVKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKVNDVVWPSSLRR 635 G RCL+ F++ALN + D + WY+ST +LQLASLQFCV CR V +LH+A+ + L N A + T K+ T VP +P +TW P L S LV + F R + V+DVVWP L++ Sbjct: 3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATEARTGAKRPSTTPVPVFRPREVTWGRPAW---LLSDICLVFAKVERFLVRQDTVVDDVVWPCRLKK 131
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 6.990e-14 Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 3 Query: 264 CLDVFSIALNQA-DSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKVNDVVWPSSLR 632 CL ++ALN+ D WY+ST +LQLASL+ C+ CR TLH+ + LL A A K+L TRVP ++ TW +P + S A + V+ L FG F+ ++ +VWP L+ Sbjct: 136 CLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLK 259
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.440e-13 Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 3 Query: 264 CLDVFSIALNQA-DSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKVNDVVWPSSL 629 CL+ +AL + D WY+ST +LQLASL+FC+ CR+ TLH+ + + +LL A K+L R RVP ++ +TW +P + AL+ ++ L FG F + V WP L Sbjct: 36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRL 158
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.060e-12 Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 3 Query: 264 CLDVFSIALNQA-DSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVKKLRRTRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGDRFNDKVNDVVWPSSLR 632 CL +ALN+ D + WY+ST +LQ ASL+FC+ CR+ +H+ + + LL A A K+L TRVP ++ +TW + + A+ V+ L FG F+ + V WP L+ Sbjct: 14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLK 137
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.030e-11 Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = 3 Query: 240 LTRAGSLRCLDVFSIALNQADSSG---WYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVKKLRRTRVPTIQPLILTWELPG-SCLKLFSSEALVKVEQLTFGDRF-NDKVNDVVWPSSLRR 635 +T RCLD F +AL+Q G WY+STLQLQLASL+FC CRS LH+ + L A+ T TRVP +Q + LTW P S L SSE ++E L ++ VVWP L+R Sbjct: 1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTAGTS---TRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQR 134
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 4.830e-10 Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 3 Query: 282 IALNQA-DSSGWYSSTLQLQLASLQFCVMCRSVSTLHMALKDGMHTLLLENAPASDTQVKKLRR----------TRVPTIQPLILTWELPGSCLKLFSSEALVKVEQLTFGD---RFNDKVNDVVWPSSLR 632 +ALN+ WY ST+QLQLAS++FCV CRSVSTLH+ +++G L + + + RVP +P +TW LP S L S +A +E ++F D R D + V P L+ Sbjct: 2 VALNETYGGKQWYISTVQLQLASVEFCVACRSVSTLHLTVEEGTPRHLWADTWSDQSDXXXXXXXXXXXGRSVLVRVPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLK 132 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1027.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1027.2.1 >prot_A-nodosum_M_contig1027.2.1 ID=prot_A-nodosum_M_contig1027.2.1|Name=mRNA_A-nodosum_M_contig1027.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=316bp MELTRAGSLRCLDVFSIALNQADSSGWYSSTLQLQLASLQFCVMCRSVSTback to top mRNA from alignment at A-nodosum_M_contig1027:76874..82400- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1027.2.1 ID=mRNA_A-nodosum_M_contig1027.2.1|Name=mRNA_A-nodosum_M_contig1027.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5527bp|location=Sequence derived from alignment at A-nodosum_M_contig1027:76874..82400- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1027:76874..82400- >mRNA_A-nodosum_M_contig1027.2.1 ID=mRNA_A-nodosum_M_contig1027.2.1|Name=mRNA_A-nodosum_M_contig1027.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at A-nodosum_M_contig1027:76874..82400- (Ascophyllum nodosum dioecious)back to top |