mRNA_A-nodosum_M_contig10243.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10243.6.1
Unique NamemRNA_A-nodosum_M_contig10243.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10243.6.1 vs. uniprot
Match: D8LR02_ECTSI (Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR02_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 5.560e-16
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    1 TRELQRKVKNEAEVLASLRTLQEETFGNGAEVEIRDVDYNLLSFEDQIRNDLETDVMV 174
            TRELQRK+KNEA+V+  L+ L+ E F NGA VE+RD DYNLLSFE+QI++DLETD+M+
Sbjct:  483 TRELQRKIKNEADVVQGLKALEGEEFPNGAVVEVRDADYNLLSFEEQIKHDLETDIMI 540
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BLAST of mRNA_A-nodosum_M_contig10243.6.1 vs. uniprot
Match: A0A6H5JCY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY8_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.680e-13
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 TRELQRKVKNEAEV---------------LASLRTLQEETFGNGAEVEIRDVDYNLLSFEDQIRNDLETDVMV 174
            TRELQRKVKNEA+V               +  L+ L+ E F NGA VE+RD DYNLLSFE+QI++DLETDVMV
Sbjct:  221 TRELQRKVKNEADVRDDKAWPSHTPHSGVVQGLKALEGEEFSNGAVVEVRDADYNLLSFEEQIKHDLETDVMV 293
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BLAST of mRNA_A-nodosum_M_contig10243.6.1 vs. uniprot
Match: F0YEW7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW7_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 1.860e-12
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    4 RELQRKVKNEAEVLASLRTLQEETFGNGAEVEIRDVDYNLLSFEDQIRNDLETDVMV 174
            R L R +KN+AEV+ +L++L+  +F NGA V  RDVDYNLLSFEDQI+ DL+TDVMV
Sbjct:  551 RGLGRTIKNDAEVVRALKSLETRSFANGARVRFRDVDYNLLSFEDQIKVDLDTDVMV 607
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BLAST of mRNA_A-nodosum_M_contig10243.6.1 vs. uniprot
Match: A0A6U0UU50_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UU50_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.490e-12
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    4 RELQRKVKNEAEVLASLRTLQEETFGNGAEVEIRDVDYNLLSFEDQIRNDLETDVMV 174
            R LQR+V+NE E++  L+ L+ E F NGA VE+R  DYNLLSFE+QIRND+ETD+M+
Sbjct:  538 RVLQRQVRNEDELVQRLKALEAEQFANGAVVEVRVKDYNLLSFEEQIRNDVETDIML 594
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BLAST of mRNA_A-nodosum_M_contig10243.6.1 vs. uniprot
Match: A0A7S2MDM3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDM3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.190e-8
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    4 RELQRKVKNEAEVLASLRTLQEETFGNGAEVEIRDVDYNLLSFEDQIRNDLETDVMV 174
            R L R V+N+ EV+ +LRTL++  + NG +V  RDVD+N+LSFE+QI+ D+ TDVMV
Sbjct:  489 RPLGRMVRNDQEVVKALRTLEDVEWPNGVKVVFRDVDFNVLSFEEQIQIDVTTDVMV 545
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10243.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LR02_ECTSI5.560e-1667.24Beta-(1,2)-xylosyltransferase n=1 Tax=Ectocarpus s... [more]
A0A6H5JCY8_9PHAE3.680e-1357.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0YEW7_AURAN1.860e-1263.16Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6U0UU50_9STRA6.490e-1261.40Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2MDM3_9STRA2.190e-854.39Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10243contigA-nodosum_M_contig10243:10855..11977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LR02
PFAMsDUF563
Model size180
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.12e-17
EggNOG OGsKOG4698@1|root,KOG4698@2759|Eukaryota
EC2.4.1.255
DescriptionEGF domain-specific O-linked N-acetylglucosamine
Cds size180
COG categoryZ
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.1152914-CDS-A-nodosum_M_contig10243:10854..108931680866390.1152914-CDS-A-nodosum_M_contig10243:10854..10893Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10243 10855..10893 +
1680866390.1287816-CDS-A-nodosum_M_contig10243:11836..119771680866390.1287816-CDS-A-nodosum_M_contig10243:11836..11977Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10243 11837..11977 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10243.6.1prot_A-nodosum_M_contig10243.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10243 10855..11977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10243.6.1

>prot_A-nodosum_M_contig10243.6.1 ID=prot_A-nodosum_M_contig10243.6.1|Name=mRNA_A-nodosum_M_contig10243.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
TRELQRKVKNEAEVLASLRTLQEETFGNGAEVEIRDVDYNLLSFEDQIRN
DLETDVMVS*
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mRNA from alignment at A-nodosum_M_contig10243:10855..11977+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10243.6.1 ID=mRNA_A-nodosum_M_contig10243.6.1|Name=mRNA_A-nodosum_M_contig10243.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1123bp|location=Sequence derived from alignment at A-nodosum_M_contig10243:10855..11977+ (Ascophyllum nodosum dioecious)
ACGCGGGAGCTGCAGCGAAAAGTAAAAAACGAGGCCGAGGTAAGCGCCGC
TGCAGAAATTTCCAGGAAATTTTTCAGGAAAAGTTCGTCGGGTTGCATGT
GTGTGTACGGAGGGAAAAGTAAGTCGCTATGTTTTTTTGTTTTTTTTTTA
ATGTGGTGGCGTGTTATCATGCCGATTGGGCTGCGATTTAACCTCAAAAC
GAGCTAGAAAAAAGAAAAAAAAAACAGAACAAACTTCGTATTGAAGGGGT
AGAGCCTAAGTACTAAAGAAAGAGCTGTAGACTCTTTAATAGTAAGAGTG
TTAATAAATACAGTTGATGGTCGTGGTTCAAATGTTGAGTCGATTCGTCG
GTTGCGTGTGTAAGGAGATCAAGCGAAAAAAAATCTGGGAAATGTATTCG
GAAATGCATTCGGTCGCGTGTGTAAGGAGATCAAACGGAGAAAAATATAT
GGAAATGTATTCGGTTGCGTGTGTAAGGAGATCAAGCGAAAAAAAAACCT
GGGGGATTGTGTTCGGAAATGTATTCGGTTGCGTGCGAAGCGAGAGAAAC
AAATGCAATCCTGGAGCACAACCGTCACTTTTTTTTATGCAGTGGTTTAG
TTGCAAAACGTTGAGATCGAGACTCCACGTGAAGGAATAAGCGACTCAAG
CCCAAGCACGTAACATTGAGTAGGGGAAACAAATCAGCAACCGAATAACG
CTCGGACGTTGATTGGTCGAAGTTTTTTTTCCTCACGGTGATTGGTCGAC
CGTTTTTTTGGGGGGCATGGTGCATCCCTTCTCATTTTTAGAAAAAACCC
AACAGATTCAGTGAGTGTTAGTTAGCGAGAGAAGTAGCTATTTCTCCCCA
ATATACGAGAGAAAACAAAGCATTTTTTTTCATCTCACTGTTTAAAAATG
AAGCAAAAATACATCAATGGACCGAAAGCGTCAACTCTTGAATAAACAGA
CTGAAACACCGTTTTTTTTAATGGGCTGCAAGGTGCTGGCAAGCCTGAGG
ACGCTACAAGAAGAAACCTTTGGTAACGGAGCTGAGGTTGAAATTCGGGA
CGTGGATTACAACCTCCTAAGCTTCGAAGACCAGATCAGGAATGATCTCG
AGACCGATGTCATGGTGAGTTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10243:10855..11977+

>mRNA_A-nodosum_M_contig10243.6.1 ID=mRNA_A-nodosum_M_contig10243.6.1|Name=mRNA_A-nodosum_M_contig10243.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig10243:10855..11977+ (Ascophyllum nodosum dioecious)
ACGCGGGAGCTGCAGCGAAAAGTAAAAAACGAGGCCGAGGTGCTGGCAAG
CCTGAGGACGCTACAAGAAGAAACCTTTGGTAACGGAGCTGAGGTTGAAA
TTCGGGACGTGGATTACAACCTCCTAAGCTTCGAAGACCAGATCAGGAAT
GATCTCGAGACCGATGTCATGGTGAGTTGA
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