mRNA_A-nodosum_M_contig1024.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: D8LMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA1_ECTSI) HSP 1 Score: 343 bits (879), Expect = 9.280e-102 Identity = 328/761 (43.10%), Postives = 413/761 (54.27%), Query Frame = 2
Query: 74 GAILAAVDIAAAP------GTPSGR--------NDVDTCVQLQALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGMGKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKR-VCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSA-ELIRLSDALEEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCRKERRTSELKRKXXXXXXXXXXXXXXXEANQDQMQHLKAQLELRKEKLVAESEAFRVQSLRQAEEVSVLLRRXXXXXXXXXXXXXARGRERRENRQAAMQAKQRADAAEKAQEETARQEKNLREQNAAMIAELQRLGKDAAEAAALRASTQELTRDVKRLTQEGEERQGWLQEXXXXXXXXXXXXXXXXXXXXXXXASKDSLAREFLEAQESWRQERILRGTEREKLEEEVDARKRLESLLAAEREKEKGLAANAANTPPEAEDISAPVGEDERQNNGECGDKSWSSMDERERTGKERVQGTEITVPAGEPRPSLDKR--RAFRLSEPQALIEEMASKLEEQAKHIASLEEEKQAVKLQRTSAIKTVEELQAEMAAMKNKLDTT-----GQARRGVSGDEDDQADDPLSAQP--------PARRIRFSVSAEDNERKLRENLAASRASEETALRELEKVRLDLGDAKGSYEEQNARVENLVAENE---VDDVGGDDGG 2254
GAILAA+D+ AAP G GR ND D VQLQAL +IH+ KVR LMRS++ELKK+LALATAQGKDHRRSAMIRAM+ RLREQ+LV+DV+KEELG K GMGKEETNDWVIRKTVGGPLRFRPKTREELQNELY+LE+K+RQAL+KLK RRTG D + V E R EG DT +Q+S EL+RLS+ALEE DALRV+VRSRDA LQAQ +A+D+LQ E R+LRG++EKL RKERR ELKRK EA+Q+Q+ HLKAQL LRKE+ +AE++ FR QSLRQAEEV VLL+R +R A QA RA+AAEK+ + + +QE LRE+N M+AELQRLGK+A EAA E RQG L+E XXXXXXXXXXXXXXX E ++L G + LE E +K G+ D + F L+E + +IEEM S+L EQA + SLEEE+QA+KLQ SA K ++L A+ AA+ +L V+ + +A+ P S++ P R +R SAE+ E +L E L A++A+++ A E ++L+L D K S + ARV+ LVA+ + +DD G G
Sbjct: 13 GAILAAMDLGAAPVPAGLLGMTPGRDPPYPGSSND-DMPVQLQALTKIHAQKVRSLMRSVAELKKRLALATAQGKDHRRSAMIRAMRTRLREQDLVVDVIKEELGLKTGMGKEETNDWVIRKTVGGPLRFRPKTREELQNELYRLERKYRQALDKLKTRRTGGDRDEGGVVGTTEERSRVELEGQGXX-------------XXDTDQQASTRELMRLSEALEEVDALRVSVRSRDAALQAQAEAIDQLQLEKRDLRGVQEKLGRKERRARELKRKHANLGEQHTALLEDFEASQEQVDHLKAQLALRKEEALAEADEFREQSLRQAEEVGVLLKREEELSTALEEEVASRXXXXXXXXHADRQAVARAEAAEKSLQVSVKQETRLREKNKTMMAELQRLGKEAGEAAXXXXXXXXXXXXXXXXXXXAEARQGRLEEARQKGATAXXXXXXXXXXXXXXXXXXXXXXXXXXEM-------KVLLGEKLALLEAE---KKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDKDTERDDEAGKKFDLTESEEIIEEMESELREQADRVFSLEEEQQALKLQLESAKKAADDLSAKNAALTAQLKAAPATSPADPAAAVTAGAETEAE-PASSRKLEESIPGSPRRPLRPCSSAEEKEWQLGEELVAAKAAKKAAQNECVALKLELQDGKASGDLHKARVKALVADKDSFILDDAHGGGSG 748
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A7S1C3S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3S2_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.460e-23 Identity = 60/110 (54.55%), Postives = 81/110 (73.64%), Query Frame = 2
Query: 152 QLQALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGMGKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHR 481
+L+A +H+ KVR LM+SI+ L+ K+A TA+ KDHRRS I+A+K ++RE EL DV+K EL + GM EE D+V+RKTVGGP RFRPKTREEL+ ++ LEK+ R
Sbjct: 6 KLRAQERMHAQKVRSLMKSIATLRDKVATLTAESKDHRRSGQIQALKGKVREAELASDVLKAELRDRLGMTAEEVADFVVRKTVGGPKRFRPKTREELELQVSSLEKRVR 115
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A482SHG0_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHG0_9ARCH) HSP 1 Score: 105 bits (263), Expect = 1.090e-21 Identity = 88/236 (37.29%), Postives = 132/236 (55.93%), Query Frame = 2
Query: 92 VDIAAAPGTPSGRNDVDTCVQLQALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGMGKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDA---LEEADALRVAVRSRDATLQAQGDAMDKLQTENREL 790
+D+A A P G D + QAL + K++ LM S+ K++A KD+RR+ MI+A++ ++++ EL+ DVVKEEL +K M E+ N+++++KT+GGP RFRP TREEL+N++Y+LEKK L K D V AE + + +T+ G R+VS D +QS E+ L DA LEE LR+ VR+RDA Q + + +L + N EL
Sbjct: 11 LDMATALELPLG---ADNEAKFQALKNLQLKKIKQLMASLDLKDKEIAKLKITTKDNRRTQMIQALRNKIKDLELINDVVKEELSRKGEMPLEQVNEYIMKKTLGGPKRFRPLTREELENKIYELEKK----LNKKVTTAPTSDVSNNV---AEAKRTD-----EDTTAQAKGSSRTVSNRYDAEKQS--EMSSLVDAAALLEELQRLRIEVRARDAVADKQREEITRLLSRNAEL 229
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A5D6Y320_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y320_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.090e-21 Identity = 95/237 (40.08%), Postives = 137/237 (57.81%), Query Frame = 2
Query: 152 QLQALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAG---MGKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDAL-EEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCRKERRTSELKRK 850
+LQAL +H KVR LM+SI++L+++L AQ K+HRRSA+I+ ++ LREQELV DV+K+ L +K + N +V +K VGGPLRFRPKTREEL++EL QL+ K+R+AL L+ T E E R Q ++ + G R+ E+ S +L AL EE + LR+ + S+ T+ AQ D + L E LR + +KL RK+RR + L+ K
Sbjct: 64 RLQALKSVHEQKVRALMKSINQLQEQLQALRAQDKEHRRSALIQGLRQSLREQELVADVLKQTLAEKLPEFRASRALVNAFVAQKCVGGPLRFRPKTREELESELEQLDTKYRKALGSLRVSAT----------EREQRGAQAKDRDSEAKCRETRGGRAEDDALMLGEEESGDLCVPPPALQEEVERLRIELSSKAVTIHAQADEVALLYAEIDTLRVVHDKLERKKRRVALLEDK 290
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A2D4C1R3_PYTIN (Aa_trans domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R3_PYTIN) HSP 1 Score: 112 bits (279), Expect = 1.930e-21 Identity = 102/315 (32.38%), Postives = 172/315 (54.60%), Query Frame = 2
Query: 101 AAAPGTPSGRNDVDTCVQLQALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGM---GKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPV-QHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDAL-EEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCRKERRTSELKRKXXXXXXXXXXXXXXXEANQDQMQHLKAQLELRKEKLVAESEAFRVQSLRQAEEVSVLLRR 1030
A+A GT S D+ +L A+ +H KVR LMRSI++L++++ Q K+HRRSA+I++++ REQEL+ID++K+ L +K +E ND++++K VG PLRFRPKTREEL+NEL L+ K+++A+E L+ + DA + R + + + + + AI VS + +Q A ++ +L EE D L+V + S+ T+ Q D + +L E +LR L E+L RK+++ + L+ K E ++ L+ QL+ +E V + A ++ + E++ L R
Sbjct: 63 ASAAGTRSVTPDLALDAKLTAMKTVHDQKVRSLMRSINQLQEQIQQLKTQDKEHRRSALIQSLRQSQREQELLIDILKQTLAEKVPEFQESRELVNDFILKKAVGAPLRFRPKTREELENELEVLDGKYKRAVENLQ--KVKEDASRAPATARGQRSIAESKRDDEDESPAI------VSRQQASQQQPVAPVVITDPSLQEEIDRLKVELASKAMTIHTQADELHELMGELDKLRILEERLERKQQKITLLEDKVSQLQQDNVKLLHEKEVETEKNAELQEQLQFIRESRVEDGTATDIERRQLLEKLQQSLAR 369
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A1V9Z379_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z379_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.810e-21 Identity = 85/223 (38.12%), Postives = 137/223 (61.43%), Query Frame = 2
Query: 158 QALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGMGKEE---TNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDALEEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCR 817
QAL IHS KVR LM+SI +L+++++ +Q K+HRRSA+I++++ + REQ+L+IDV+KE L KA ++ N+++++KT+GGP RFRPKTREEL+ E +L+KK+++AL+ K + G A K A+ P Q + P++ S + V A G +Q E ++ EE D LR+ + S+D L AQ ++ LQ + +L +++K R
Sbjct: 62 QALNNIHSQKVRSLMKSIHQLQEQVSAMQSQDKEHRRSALIQSLRKKQREQDLLIDVLKESLATKAPEFQDSIPLVNEFILKKTLGGPKRFRPKTREELELEFLELDKKYKRALQNAKLAKQGQAAKK-----ADEVPAQDD--PETVESDVVD---QVIASGAEFKQFR-EYQEITALREEVDRLRITIASKDVNLNAQLQQIELLQQQVAQLLTIQDKFER 273
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A6G0XT65_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XT65_9STRA) HSP 1 Score: 108 bits (270), Expect = 6.130e-21 Identity = 90/267 (33.71%), Postives = 141/267 (52.81%), Query Frame = 2
Query: 161 ALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGMGKEE---TNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDALEEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCRKERRTSELKRKXXXXXXXXXXXXXXXEANQDQMQHLKAQLELRKE 952
AL IHS KVR LM+SI +L++++A Q K+HRRSA+I++++ + REQ+L++DV+KE L K +++ N+++++KT+ GP RFRPKTREEL+ E +L+KK+++ L LK +T R+ E+E R TP + EL+ + LE LRVA +++ LQAQ D +D L+ EL + +KL R + + S K E ++ Q L+A+L KE
Sbjct: 71 ALHNIHSQKVRALMKSIHQLQEQVATMKTQDKEHRRSALIQSLRKKQREQDLLVDVLKETLQAKVSEFQDDPNLVNEFILKKTISGPKRFRPKTREELELEFAELDKKYKRTLASLKKAKTEMPQTPRI-QESEER---------------------------TPAEPGPELVAMQKELE---TLRVAAAAKEIALQAQQDQIDGLRKRLEELHLVEDKLERTKTKYSASKEAIKKLQDDAIRLIQDKECESERRQQLEAELAFYKE 306
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A397AIE0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AIE0_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 3.560e-20 Identity = 56/118 (47.46%), Postives = 85/118 (72.03%), Query Frame = 2
Query: 158 QALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGM---GKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLK 502
QAL IH KVR LM+SI +L+ ++A AQ K+HRRSA+I+ ++ + R+QELV+DV+K+ L K G + N+++++KT+GGP RFRPKTREEL+ E L++K+++A+ LK
Sbjct: 6 QALNHIHGQKVRTLMKSIHQLQDQVATMKAQDKEHRRSALIQNLRKQQRDQELVLDVLKDTLKTKVGDFHGSLDAVNEFILKKTLGGPKRFRPKTREELELEFVDLDQKYKRAMASLK 123
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: W2RBF8_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RBF8_PHYPN) HSP 1 Score: 105 bits (262), Expect = 5.930e-20 Identity = 82/231 (35.50%), Postives = 135/231 (58.44%), Query Frame = 2
Query: 161 ALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGMGKEE---TNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDALEEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCRKERRTSELK 844
AL +H KVR LMRSI++L+++L AQ K+HRRSA+I+ ++ + REQEL+IDV+K+ L +K ++ ND+V++KT GGP+RFRPKTREEL+NEL L + ++ +EKLK D+ + P+ E +P ++++ DT ++ + EE + LR V S+ T+ AQ + M ++ TE +LR + +++ RK+ + + L+
Sbjct: 78 ALKTVHEQKVRALMRSINQLQEQLQGLKAQEKEHRRSALIQDLRTQQREQELLIDVLKQTLQEKVSEFQDSRALVNDFVLKKTAGGPMRFRPKTREELENELQTLGQNFQRTVEKLKQ-----DSQRNAAPKEE-KPYENDQXXXXXXXXX---------XXDTNNPTADAAL-----YEELEQLRAQVASKSVTIHAQAEEMTEVYTELDKLRVVEDQIVRKKHKIALLR 288
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Match: A0A8K1CM85_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM85_PYTOL) HSP 1 Score: 105 bits (261), Expect = 8.240e-20 Identity = 83/242 (34.30%), Postives = 145/242 (59.92%), Query Frame = 2
Query: 134 DVDTCVQLQALGEIHSHKVRMLMRSISELKKKLALATAQGKDHRRSAMIRAMKIRLREQELVIDVVKEELGKKAGM---GKEETNDWVIRKTVGGPLRFRPKTREELQNELYQLEKKHRQALEKLKARRTGHDAIKRVCPEAEGRPVQHEEGPQSSTSAIAGGERSVSALGDTPEQSSAELIRLSDALEEADALRVAVRSRDATLQAQGDAMDKLQTENRELRGLREKLCRKERRTSELKRK 850
D+ + +L A+ H KVR L+RSI++L++++ +Q K+HRRSA+I+ ++ REQE++ID++K+ L K +E N+++++K+VGGP+RFRPK+REEL+NEL L+ K+++A+E LK + +A R E + R + ++ P+S + G V + E+ E++ EE D L+V + S+ T+ +Q D +++L LR L EK+ RK+ + + L+ K
Sbjct: 64 DMTSGAKLTAIKSAHDQKVRTLLRSINQLQEQIQTLKSQDKEHRRSALIQNLRKSQREQEMLIDILKQTLLDKVPEFQESRELVNEYILKKSVGGPMRFRPKSREELENELEVLDNKYKRAVENLKKAK---EARPRPATETDRRNKRQQQ-PESDEE-VEDGSVDVRSRVSIVEK---EVVTDPALQEEIDQLKVELASKTMTIHSQVDEINELYAXXERLRVLEEKVERKKEKIAVLEEK 297 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1024.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1024.4.1 >prot_A-nodosum_M_contig1024.4.1 ID=prot_A-nodosum_M_contig1024.4.1|Name=mRNA_A-nodosum_M_contig1024.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=767bp MLQARSNAECDGAILAAVDIAAAPGTPSGRNDVDTCVQLQALGEIHSHKVback to top mRNA from alignment at A-nodosum_M_contig1024:50587..60001+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1024.4.1 ID=mRNA_A-nodosum_M_contig1024.4.1|Name=mRNA_A-nodosum_M_contig1024.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9415bp|location=Sequence derived from alignment at A-nodosum_M_contig1024:50587..60001+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1024:50587..60001+ >mRNA_A-nodosum_M_contig1024.4.1 ID=mRNA_A-nodosum_M_contig1024.4.1|Name=mRNA_A-nodosum_M_contig1024.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2301bp|location=Sequence derived from alignment at A-nodosum_M_contig1024:50587..60001+ (Ascophyllum nodosum dioecious)back to top |