mRNA_A-nodosum_M_contig1022.34.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1022.34.1
Unique NamemRNA_A-nodosum_M_contig1022.34.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: D7G475_ECTSI (Deubiquitinating enzyme A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G475_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.590e-58
Identity = 105/163 (64.42%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADSCSSAHQVFPGGPSTYYER-RGGHGSFGGGFVESDLRAIEQELEQAAITASLAEFHGKNGGGLYDSDAGDFGSGSGLCSSAGKGEPSFSVARRGGERRGAR 489
            PINIFHGG+R+GNAPIRVSYHG +HYNAI DPEEASVGQGLG+PGLSKE AEKESLKRALA+SCSSAH VFPG   T+++  RG HGSFG GF ESD+RA E+ELEQAAITASL++F G   GG   ++    G+             +FSV RRGG   G R
Sbjct:   69 PINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFPGASPTFFKGGRGMHGSFGEGFGESDVRATEEELEQAAITASLSDFRGTTSGGGSSNNGKSDGA-------------AFSVPRRGGRGSGGR 218
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: A0A6H5JLC1_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC1_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 9.200e-55
Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADSCSSAHQVFPGGPSTYYER-RGGHGSFGGGFVESDLRAIEQELEQAAITASLAEFHGKNG 366
            PINIFHGG+R+GNAPIRVSYHG +HYNAI DPEEASVGQGLG+PGLSKE AEKESLKRALA+SCSSAH VF G   T+++  RG HGSFG GF ESDLRA E+ELEQAAITASLA+F G  G
Sbjct:  266 PINIFHGGYRSGNAPIRVSYHGGNHYNAIVDPEEASVGQGLGIPGLSKEAAEKESLKRALAESCSSAHHVFSGESPTFFKGGRGTHGSFGEGFGESDLRATEEELEQAAITASLADFRGTTG 387
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: UPI001B8882BB (OTU domain-containing protein 5-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8882BB)

HSP 1 Score: 77.8 bits (190), Expect = 1.140e-13
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADS 192
            PIN FHG ++T N P+RVSYHG  HYN++ DP +A++G GLG+PGL    AEK  ++ A+  S
Sbjct:  258 PINTFHGAYKTDNEPMRVSYHGSVHYNSVIDPYKATIGVGLGLPGLQPGLAEKNLMRDAVKQS 320
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: UPI001EE51BAC (OTU domain-containing protein 5-B-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE51BAC)

HSP 1 Score: 76.6 bits (187), Expect = 2.910e-13
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADSCSSAHQVFPGGPSTYYERRGGHGSFGGGFVESDLRAIEQELEQAAITASLA 345
            PIN FH  ++T N PI++SYHG  HYN++ DP +A++G GLG+PGL    A+K  +K A+  S            +T+ E+           +E  +R  + EL Q  I   +A
Sbjct:  262 PINTFHSAYKTDNEPIKISYHGGVHYNSVVDPYKATIGVGLGLPGLQPGLADKNQMKDAVKMS-----------ENTHIEKT---------MLEDKIRETDWELTQETIEEQVA 355
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: UPI00065B9E12 (OTU domain-containing protein 5-B n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B9E12)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-12
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADS 192
            P+N F   ++T NAPIR+SYHG  HYN+I DP  AS+G GLG+PGL    AE+  +K A+  S
Sbjct:  278 PMNTFDTAYKTDNAPIRLSYHGNVHYNSIVDPYSASIGVGLGLPGLQPGQAERNQMKDAVKSS 340
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: A0A0L8I9C1_OCTBM (Deubiquitinating enzyme A n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8I9C1_OCTBM)

HSP 1 Score: 74.3 bits (181), Expect = 1.680e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADS 192
            PIN FH  ++T N PIR+SYH   HYN++ DP +A++G GLG+PGL    AEK  ++ A+  S
Sbjct:  122 PINTFHSSYKTDNEPIRISYHRNVHYNSVVDPYKATIGVGLGLPGLQPGLAEKNLMRDAVTQS 184
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: A0A6P7SGJ8_OCTVU (Deubiquitinating enzyme A n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SGJ8_OCTVU)

HSP 1 Score: 74.3 bits (181), Expect = 1.870e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADS 192
            PIN FH  ++T N PIR+SYH   HYN++ DP +A++G GLG+PGL    AEK  ++ A+  S
Sbjct:  266 PINTFHSSYKTDNEPIRISYHRNVHYNSVVDPYKATIGVGLGLPGLQPGLAEKNLMRDAVTQS 328
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BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: A0A812DLY9_SEPPH (Deubiquitinating enzyme A n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DLY9_SEPPH)

HSP 1 Score: 73.9 bits (180), Expect = 2.530e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADS 192
            PIN FH  ++T N PIR+SYH   HYN++ DP +A++G GLG+PGL    AEK  ++ A+  S
Sbjct:  267 PINTFHSAYKTDNEPIRISYHRNVHYNSVVDPFKATIGVGLGLPGLQPGLAEKNLMRDAVTQS 329
[Close]
BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: B7G121_PHATC (Deubiquitinating enzyme A n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G121_PHATC)

HSP 1 Score: 73.6 bits (179), Expect = 3.430e-12
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRALADS 192
            P+NIFH  ++TG+ PIR+SYH  +HYNA+ DP   + G GLG+PGL    A+K  + +A+A+S
Sbjct:  309 PLNIFHAEYKTGDTPIRLSYHDGNHYNAVIDPLVPTAGLGLGLPGLQPGLADKMQVAKAMAES 371
[Close]
BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Match: A0A5N5SQ95_9CRUS (Deubiquitinating enzyme A n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5SQ95_9CRUS)

HSP 1 Score: 72.0 bits (175), Expect = 1.200e-11
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    4 PINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKETAEKESLKRA 180
            PINIF G  +T NAPIR++YH  +HYN++ DP  A++G GLG+PGL    AEK  L  A
Sbjct:  319 PINIFQGSMQTDNAPIRLTYHRGTHYNSLVDPYNATIGVGLGLPGLQPGQAEKNLLSEA 377
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1022.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G475_ECTSI2.590e-5864.42Deubiquitinating enzyme A n=1 Tax=Ectocarpus silic... [more]
A0A6H5JLC1_9PHAE9.200e-5577.87Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
UPI001B8882BB1.140e-1352.38OTU domain-containing protein 5-like n=1 Tax=Gigan... [more]
UPI001EE51BAC2.910e-1335.09OTU domain-containing protein 5-B-like n=2 Tax=Hal... [more]
UPI00065B9E121.380e-1252.38OTU domain-containing protein 5-B n=2 Tax=Aplysia ... [more]
A0A0L8I9C1_OCTBM1.680e-1249.21Deubiquitinating enzyme A n=1 Tax=Octopus bimaculo... [more]
A0A6P7SGJ8_OCTVU1.870e-1249.21Deubiquitinating enzyme A n=2 Tax=Octopus TaxID=66... [more]
A0A812DLY9_SEPPH2.530e-1249.21Deubiquitinating enzyme A n=1 Tax=Sepia pharaonis ... [more]
B7G121_PHATC3.430e-1249.21Deubiquitinating enzyme A n=2 Tax=Phaeodactylum tr... [more]
A0A5N5SQ95_9CRUS1.200e-1154.24Deubiquitinating enzyme A n=2 Tax=Armadillidium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1022contigA-nodosum_M_contig1022:232532..234229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G475
Preferred nameOTUD5
PFAMsOTU
Model size497
Max annot lvl2759|Eukaryota
KEGG koko:K12611,ko:K12655
KEGG Pathwayko03018,ko04622,map03018,map04622
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001775,GO:0001816,GO:0001817,GO:0001818,GO:0002237,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002286,GO:0002287,GO:0002292,GO:0002293,GO:0002294,GO:0002295,GO:0002360,GO:0002363,GO:0002366,GO:0002376,GO:0002460,GO:0002520,GO:0002521,GO:0002682,GO:0002790,GO:0002791,GO:0002792,GO:0002819,GO:0002822,GO:0003006,GO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006955,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009306,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009987,GO:0010033,GO:0010498,GO:0015031,GO:0015833,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030217,GO:0031647,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032504,GO:0032625,GO:0032638,GO:0032660,GO:0032700,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033993,GO:0035710,GO:0036037,GO:0036211,GO:0036459,GO:0042093,GO:0042110,GO:0042221,GO:0042886,GO:0043161,GO:0043170,GO:0043207,GO:0043367,GO:0043368,GO:0043369,GO:0043373,GO:0043374,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045058,GO:0045165,GO:0045184,GO:0045321,GO:0046631,GO:0046632,GO:0046649,GO:0046903,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050663,GO:0050707,GO:0050708,GO:0050709,GO:0050710,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051239,GO:0051241,GO:0051603,GO:0051704,GO:0051707,GO:0061578,GO:0065007,GO:0065008,GO:0070011,GO:0070201,GO:0070536,GO:0070646,GO:0070647,GO:0071108,GO:0071702,GO:0071704,GO:0071705,GO:0072538,GO:0072539,GO:0072540,GO:0072607,GO:0072619,GO:0090087,GO:0101005,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1903530,GO:1903531,GO:1904950,GO:1905076,GO:1905077,GO:1990380,GO:2000316
Exons3
Evalue4.24e-59
EggNOG OGsKOG2605@1|root,KOG2605@2759|Eukaryota
EC3.4.19.12
Descriptionthiol-dependent ubiquitin-specific protease activity
Cds size495
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03019,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.0848367-CDS-A-nodosum_M_contig1022:232531..2326511680866389.0848367-CDS-A-nodosum_M_contig1022:232531..232651Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 232532..232651 +
1680866389.095212-CDS-A-nodosum_M_contig1022:233041..2332451680866389.095212-CDS-A-nodosum_M_contig1022:233041..233245Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 233042..233245 +
1680866389.107461-CDS-A-nodosum_M_contig1022:234057..2342281680866389.107461-CDS-A-nodosum_M_contig1022:234057..234228Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 234058..234228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1022.34.1prot_A-nodosum_M_contig1022.34.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1022 232532..234228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1022.34.1

>prot_A-nodosum_M_contig1022.34.1 ID=prot_A-nodosum_M_contig1022.34.1|Name=mRNA_A-nodosum_M_contig1022.34.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
VPINIFHGGFRTGNAPIRVSYHGRSHYNAITDPEEASVGQGLGVPGLSKE
TAEKESLKRALADSCSSAHQVFPGGPSTYYERRGGHGSFGGGFVESDLRA
IEQELEQAAITASLAEFHGKNGGGLYDSDAGDFGSGSGLCSSAGKGEPSF
SVARRGGERRGARRR
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mRNA from alignment at A-nodosum_M_contig1022:232532..234229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1022.34.1 ID=mRNA_A-nodosum_M_contig1022.34.1|Name=mRNA_A-nodosum_M_contig1022.34.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1698bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:232532..234229+ (Ascophyllum nodosum dioecious)
GTTCCGATCAACATCTTCCACGGGGGCTTTCGAACGGGTAACGCTCCCAT
CCGAGTGAGCTACCATGGACGCAGTCACTACAACGCCATCACCGATCCGG
AGGAGGCCAGCGTGGGACAGGTCTGGCAACTCACTCCTCGCTCCGGATTC
CTGACCCGTTGTCCTGTTTGAACTCTTCATGCAACAAGATTTTGATGACA
TATACAATACCCCATAATTCGTGTTAAACTTAATTATTTTTTTCATTTTG
TTAAGGTTTTCTTTGCTACTCCGTGTCTCGATGAAAAGGGTTCGTGTGTG
CACAATGAGCTGATTCAGGTGATCGATGTGTGGTTCAATTCTTCACCCAT
TGTCAAGAAATTTGAATACCAGTAGACTATAGTATGTTTTTATGGTGACG
CGCCTTGCCTGGTCTCCTCTTGGACCTCCACAAAATATTTACTTTTTATA
TTACTAGCTCTACCTACCTATCTAATAATACTGTATCGTGTGACACACCT
GTGCTACAAGGGGCTTGGTGTTCCAGGGCTGTCGAAAGAGACTGCGGAGA
AGGAGTCGCTCAAGCGCGCTCTCGCGGACTCCTGCTCCTCGGCGCATCAG
GTGTTCCCCGGTGGGCCCTCGACGTACTACGAGAGACGGGGTGGTCACGG
TTCGTTCGGAGGGGGGTTCGTGGAATCCGACCTGAGGGCGATCGAACAGG
AATTGGAGCAAGCGGTGAGGAGAGAGGGGTGGTGCTGTTCTTCACTGGCG
CTTGTTTATTTTTTGTTTGATTGTGTCTCACTTACGGCCGATGGGCCTCA
ACGTGCTACATGTTACCAATCCCACCTACTGCAACGTTGCCGTCCTGCCT
ATGGCGCACGAAGAATCTTCTCATTTCTCCCCGGTTCTCGCCTTATGATT
TTTTATCGCGATGCAAGTTAAGCACTCTCACAACTCGTCAACCATTGGTT
GAATTTTACTTACTCGCGTTCTCATGCTTTCCTTTCCGCTACGGAAGAAA
GAAAGAAATAATACAAATTCTGGCTTTCACAAGAATCGAACTCATGACTT
CCGCACTAATAGGTGTACGGTACGAGGTAACCTTCTGGACCACTCGGGCG
ACGAGTATTGTTGCTTGGGATGGTGTTGCTACGATAGTAATGGCGTTCTT
GCTGTAATTGATACCAGTAAGGTTTTGCGATCATGCTGGCGATGGAAGGT
TCGCGCTCAAGCATTGCCTGCGGTCGGTCACCCTCCGATAGCGTTTGAGA
AGAGATGCCTGCGGGAATCCTCACGCGGGGTTTCGTCGACCCACGAGCAC
TTCTCAAAACATACTGTATCGCAAGAAGGCTCCGTCAGGCTCTGCCATCT
CAAATGAGGGCGAAGAAATACATGGTCATTGAATCATCTGCATGAGTTGA
AAACATTACGCGTACGCTCGACGCCCCGCCCCATTTCCTCTGCGTCTCGA
ATTCCACCGGGAACTTTGTGATGTGACAAATACTTATTTTTTTTATCTTT
GACCGTTACCGTGACCGTGACCGAAGGCGATCACAGCCTCTTTGGCCGAG
TTCCACGGCAAGAACGGGGGCGGTCTGTACGACAGCGACGCAGGCGATTT
TGGCAGCGGTAGTGGCCTCTGCTCCTCCGCCGGAAAGGGCGAGCCCTCCT
TCTCCGTTGCTCGGCGAGGGGGCGAGAGGAGGGGGGCACGGCGGCGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1022:232532..234229+

>mRNA_A-nodosum_M_contig1022.34.1 ID=mRNA_A-nodosum_M_contig1022.34.1|Name=mRNA_A-nodosum_M_contig1022.34.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:232532..234229+ (Ascophyllum nodosum dioecious)
GTTCCGATCAACATCTTCCACGGGGGCTTTCGAACGGGTAACGCTCCCAT
CCGAGTGAGCTACCATGGACGCAGTCACTACAACGCCATCACCGATCCGG
AGGAGGCCAGCGTGGGACAGGGGCTTGGTGTTCCAGGGCTGTCGAAAGAG
ACTGCGGAGAAGGAGTCGCTCAAGCGCGCTCTCGCGGACTCCTGCTCCTC
GGCGCATCAGGTGTTCCCCGGTGGGCCCTCGACGTACTACGAGAGACGGG
GTGGTCACGGTTCGTTCGGAGGGGGGTTCGTGGAATCCGACCTGAGGGCG
ATCGAACAGGAATTGGAGCAAGCGGCGATCACAGCCTCTTTGGCCGAGTT
CCACGGCAAGAACGGGGGCGGTCTGTACGACAGCGACGCAGGCGATTTTG
GCAGCGGTAGTGGCCTCTGCTCCTCCGCCGGAAAGGGCGAGCCCTCCTTC
TCCGTTGCTCGGCGAGGGGGCGAGAGGAGGGGGGCACGGCGGCGG
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