mRNA_A-nodosum_M_contig1022.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1022.26.1
Unique NamemRNA_A-nodosum_M_contig1022.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: D7FZL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL4_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 3.420e-117
Identity = 203/319 (63.64%), Postives = 242/319 (75.86%), Query Frame = 2
Query:   11 EELEIAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAA-KKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARS------------------RGEVTEGKAGEV-------KPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--RPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH 883
            EE +  A+GRRR++I ++V++AVR+G+IPKE    YA+LL+SP+MS+LC N+GWRARLLGD  FMTKLAIEM+TGT +Q +AEYQKRGK+F +EL+FV ADTLTCLFAN+AA+WLSCPTVAV A  KK  AK+GG LQ +LA+CPSNAFQKVV EGGVSK+FS+ +RGAAL++PMPKLF +GFGATL GYGL+AGLE   A R+                  RG     KA          KP VPVLGS LA+G FLAV TN+RYQ IAGAVEQR+FD M    PGLS L ST VRSANLYVGSLTIVD LR+VG+QH
Sbjct:  109 EEYDFVAKGRRRKRIFRKVERAVRRGKIPKECSSDYAKLLTSPLMSLLCKNSGWRARLLGDTTFMTKLAIEMVTGTAAQFLAEYQKRGKKFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWRTAAAAAPPVVVERGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDGLRYVGVQH 427          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A6H5LAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU0_9PHAE)

HSP 1 Score: 356 bits (913), Expect = 1.620e-111
Identity = 191/294 (64.97%), Postives = 221/294 (75.17%), Query Frame = 2
Query:   83 KGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAA-KKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQA----ARSRGEVTEGKAGEV---------------------KPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--RPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQ 880
            +G+IPKE    YA+LL+SP+MS+LC N+GWRARLLGD  FMTKLAIEM+TGT +Q +AEYQKRGKRF +EL+FV ADTLTCLFAN+AA+WLSCPTVAV A  KK  AK+GG LQ +LA+CPSNAFQKVV EGGVSK+FS+ +RGAAL++PMPKLF +GFGATL GYGL+AGLE   A    A +   V  GK                         KP VPVLGS LA+G FLAV TN+RYQ IAGAVEQR+FD M    PGLS L ST VRSANLYVGSLTIVDWLR+VG+Q
Sbjct:    9 RGQIPKECSSDYAKLLTSPLMSLLCKNSGWRARLLGDTTFMTKLAIEMVTGTGAQFLAEYQKRGKRFMQELDFVAADTLTCLFANFAAVWLSCPTVAVKAVCKKEAAKAGGTLQKFLAACPSNAFQKVVAEGGVSKTFSVAERGAALLVPMPKLFVIGFGATLAGYGLIAGLETFSAWTTAAAAAPPVVAGKGAAKSKRGLKRAQKARAAALAEEAQKPPVPVLGSGLAVGMFLAVWTNLRYQFIAGAVEQRIFDTMLAKNPGLSSLASTAVRSANLYVGSLTIVDWLRYVGVQ 302          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A836CF64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF64_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.460e-52
Identity = 109/223 (48.88%), Postives = 145/223 (65.02%), Query Frame = 2
Query:  245 QVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGG---ALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAM--ARPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*CSED 898
            QV+AEY+KR  +F KE +FVLAD LT  FAN+AA+W SCPT+  + A    A S G   +L  ++ SCPSNAFQ+VV     +  +SL QRGAALI PMP+LF +GFGA   GYGL + + +I+ A     V   +        P+  SSLAIG FLAVS+N+RYQ+IAG +EQR  D    ++P +S   S  +R+ANLY+G+  IVDWLR VG+QH   ++
Sbjct:    2 QVLAEYEKRRDKFFKEFDFVLADILTSCFANFAAVWASCPTMRPAIAGSADAASKGMFASLGRFMNSCPSNAFQRVVAP---ATHYSLAQRGAALIKPMPQLFVIGFGACAAGYGLTSLMSHIRLALDPTMVKNTED------APIFKSSLAIGAFLAVSSNLRYQIIAGGIEQRFLDVALASKPAVSNACSFVLRTANLYLGASMIVDWLRIVGVQHSAQDE 215          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A5J9U7T0_9POAL (Uncharacterized protein (Fragment) n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9U7T0_9POAL)

HSP 1 Score: 183 bits (464), Expect = 6.860e-47
Identity = 110/288 (38.19%), Postives = 172/288 (59.72%), Query Frame = 2
Query:   23 IAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMARPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 880
            +A  GR+ E +   +  AV+ GR+P E  + +A L +SP+   L    G++ RLL D  F+TK+A E   G  ++  AEY+KR  +F KEL+FV+ D +  + A++  +WL  PTV++   K  +A + GA+  +  +CP NAFQ  +       S+S  QR  A++    KLFAVG  A+LVG G+   L      ++R  VTE  AGEV+  +P++ +S+A G ++AVS+N+RYQ++AG +EQRM + +       LG+    VR+ N ++GSL  VD+ R+VG+Q
Sbjct:  117 LAQLGRKLESLPADLAAAVQAGRVPGEIVRRFADLEASPVFRWLLQFGGFKERLLADDLFLTKVAFECGIGIFTKTAAEYEKRKDKFMKELDFVICDVVMAIIADFMLVWLPAPTVSL---KPSIAGNAGAIAKFFYNCPDNAFQVALA----GSSYSFLQRIGAIVRNGAKLFAVGTSASLVGTGVTNAL-----IKARKAVTEDSAGEVEN-IPIVETSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHRHKVALGALCFAVRTGNTFLGSLLWVDYARWVGVQ 391          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A6P5H2P0_ANACO (protein RETICULATA-RELATED 4, chloroplastic-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H2P0_ANACO)

HSP 1 Score: 179 bits (455), Expect = 6.200e-46
Identity = 110/290 (37.93%), Postives = 169/290 (58.28%), Query Frame = 2
Query:   17 LEIAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMARPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 880
            L +A  GR  E + Q +  AV  GRIP E  + +A L  SP++  L    G++ RLL D  F+TK+AIE   G  ++  AE+++R  +F KEL+FV AD +  + A++  +WL  PTV++   K  +A S G +  +  SCP NAFQ  +       S+S+ QR  A++    KLF VG GA+L+G G+   L NI+ A  +   +E +       VPVL +S+A G ++AVS+N+RYQ++AG +EQRM + +       L +    VR+ N ++GSL  VD+ R++G+Q
Sbjct:   88 LVLAEMGRGLESLPQDLAAAVEAGRIPGEIVRRFAELEKSPVLRWLLRFGGFKERLLADDLFLTKVAIECGVGIFTKTAAEWERRRDKFPKELDFVFADVVMAIIADFMLVWLPAPTVSL---KPPLALSAGPIAKFFYSCPDNAFQVALA----GTSYSVLQRVGAIVRNGSKLFVVGTGASLIGTGITNVLINIRKAFDKDFASEAED------VPVLSTSIAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNRKLALSAMCFAVRTGNTFLGSLMWVDYARWIGIQ 364          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A833R1V6_9POAL (Protein RETICULATA-RELATED 4 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R1V6_9POAL)

HSP 1 Score: 179 bits (453), Expect = 1.700e-45
Identity = 115/290 (39.66%), Postives = 165/290 (56.90%), Query Frame = 2
Query:   17 LEIAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMARPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 880
            L + A GR  E +   +  A++ GRIP +    +  L  SP+M  L    G++ RLL D  F+TK+ IE   G  ++  AEY+KR + F KEL+FVLAD +  L A++  +WL  PTV++   K  +A S G +  +  SCP NAFQ V   G    S+S  QR  A++    KLF VG GA+L+G GL   L       SR    +  AG V   VP+L +S A G ++AVS+N+RYQ++AG +EQRM + +       LG+    VR+ N ++GSL  VD+ R+VG+Q
Sbjct:  103 LVLGAAGRGLETLPSDLAAAIKAGRIPGDIVTRFLELEKSPLMRWLLQFGGFKERLLADDLFLTKVGIECGVGIFTKTAAEYEKRKENFLKELDFVLADVIMALVADFMLVWLPAPTVSL---KPPLAVSAGPIAKFFYSCPDNAFQVVALSG---TSYSFLQRVGAILRNGSKLFGVGTGASLIGTGLTNAL-----IYSRKAFDKDFAG-VAEDVPILSTSAAYGVYMAVSSNLRYQILAGIIEQRMLEPLLHNQKLALGALCFAVRTGNTFLGSLMWVDYARWVGVQ 380          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A835H7S3_9MAGN (Uncharacterized protein n=2 Tax=Coptis chinensis TaxID=261450 RepID=A0A835H7S3_9MAGN)

HSP 1 Score: 175 bits (444), Expect = 2.320e-44
Identity = 110/290 (37.93%), Postives = 168/290 (57.93%), Query Frame = 2
Query:   17 LEIAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMARPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 880
            L +A  GR  E +   + KAV  GRIP    + Y  L  SP    L    G+R RLL D  F+ K+++E   G  ++  AEY+KR + F KEL+FV+AD +  + A++  +WL  PTV++   +  +A S G +  +  SCP NAFQ  V  GG+S  +SL QR  A+     KLFAVG  A+LVG G+   L      ++R  V +   GEV+  +P++ +S+A G ++A+S+N+RYQ++AG +EQR+ + +       L +    VR+ N Y+GSL  VD+ R++G+Q
Sbjct:  102 LALAQFGRSLENVPSDLVKAVESGRIPVSILERYFELKKSPFFKWLLQFGGFRERLLADDLFLAKISMECGVGIFTKTAAEYEKRKENFMKELDFVIADVVMAIVADFMLVWLPAPTVSL---RPPLAGSAGPIARFFFSCPDNAFQ--VALGGIS--YSLLQRIGAIARNGAKLFAVGTSASLVGTGVTNAL-----IKARKTVEKSFVGEVEE-LPIVSTSVAYGVYMAISSNLRYQLLAGVIEQRVLEPLLHQHKIVLSALCFAVRTGNTYLGSLLWVDYARWIGIQ 378          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A2T7EEC5_9POAL (Uncharacterized protein n=7 Tax=Paniceae TaxID=147428 RepID=A0A2T7EEC5_9POAL)

HSP 1 Score: 176 bits (445), Expect = 2.450e-44
Identity = 106/288 (36.81%), Postives = 171/288 (59.38%), Query Frame = 2
Query:   23 IAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMARPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 880
            +A  GR+ E +   +  AV  GR+P E  + +  L +SP+   L    G++ RLL D  F+TK+ IE   G  ++  AEY+KR + F KEL+FV+AD +  + A++  +WL  PTV++   +  +A + GA+  +  +CP NAFQ  +       S+SL QR  A++    KLFAVG  A+L+G G    L      ++R  V++  AGEV+  +P++ +S+A G ++AVS+N+RYQ++AG +EQRM + +       LG+    VR+ N ++GSL  VD+ R++G+Q
Sbjct:  119 LAQLGRKLESLPADLAAAVEGGRVPGEIVRRFVDLEASPVFRWLLQFGGFKERLLADDLFLTKVGIECGVGIFTKTAAEYEKRRENFVKELDFVVADVIMAIVADFMLVWLPAPTVSL---RPPLAVNSGAIAKFFYNCPDNAFQVALA----GTSYSLLQRVGAIVRNGAKLFAVGTSASLIGTGATNAL-----IKARQAVSKDFAGEVEN-IPIVATSVAYGVYMAVSSNLRYQILAGVIEQRMLEPLLHRHKLVLGAMCFAVRTGNTFLGSLLWVDYARWIGIQ 393          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A7S3XYV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYV0_HETAK)

HSP 1 Score: 172 bits (437), Expect = 2.750e-44
Identity = 102/270 (37.78%), Postives = 157/270 (58.15%), Query Frame = 2
Query:   74 AVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMA--RPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGL 877
            AV  G++P +  + + +   S +M       G+R RL+ D +F+TK A+E+  G V Q+ AE ++RG +  ++L+FV+AD LTC+ AN+ A+WL+ PT+A  A     A  G A++ +  SCP NAFQKV T G     F++ QR   L+   P+LF VGF A++ G+G   GL  ++   +     E   G     V VL  +L IG +L VSTN+RYQ++AG +E+R+  A+   +  L+  GS   R+ N +VGS  +V  L++ GL
Sbjct:   31 AVVAGKLPVDALERFLKFEKSAVMGGFMKTAGFRNRLMNDPSFLTKCAMEIGIGGVCQLAAEVKERGDKLLQQLDFVVADVLTCVIANFMAVWLAAPTLAALAPPPAAA--GNAVKRFFDSCPGNAFQKV-TPGRAP--FTVAQRCGTLVGAFPQLFLVGFAASVAGFGFTLGLSKLREKLNPASAEEEPLGGPAKEVQVLKPALVIGAYLGVSTNVRYQLVAGLLEERLLGALFANQQFLNTAGSFIFRTGNTFVGSSQMVMTLKWTGL 295          
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Match: A0A6A4LPZ0_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LPZ0_9ERIC)

HSP 1 Score: 175 bits (444), Expect = 3.020e-44
Identity = 110/294 (37.41%), Postives = 169/294 (57.48%), Query Frame = 2
Query:    5 GDEELEIAAEGRRREKIRQRVDKAVRKGRIPKEYKQAYARLLSSPIMSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKELEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCPSNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAGLENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIAGAVEQRMFDAMARPGLSKLGSTF--VRSANLYVGSLTIVDWLRFVGLQ 880
            G+  L + A GR  + + + +  A+  G+ P    + Y  L  SPI   L    G++ RLL D  F+TK+AIE   G  ++  AE ++R ++F+KEL+FV AD +  + A++  +WL  PTV++   +  +A S G L  +   CP NAFQ  +       S+S  QR  A++    KLFAVG GA+LVG G+  GL N     +R  + +  AGE +  VP+L +S+A G ++AVS+N+RYQV+AG +EQR  + +       L +T   VR+ N ++GSL  VD+ R+VG+Q
Sbjct:  105 GEAMLVLMAVGRALDSLPKDLAAAIEAGKXPGSIVRRYFELEKSPIFRWLLQFGGFKERLLADDLFLTKVAIECGVGIFTKTAAEXERRREKFTKELDFVFADVVMAIIADFMLVWLPAPTVSL---RPALAVSAGPLAKFFYGCPDNAFQVALA----GTSYSFLQRVGAIVRNGAKLFAVGTGASLVGTGITNGLIN-----ARKAIDKTFAGEAED-VPILSTSVAYGVYMAVSSNLRYQVLAGVIEQRXLEPLLHQHKIWLSATCFAVRTGNTFLGSLMWVDYARWVGIQ 385          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1022.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL4_ECTSI3.420e-11763.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAU0_9PHAE1.620e-11164.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CF64_9STRA2.460e-5248.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J9U7T0_9POAL6.860e-4738.19Uncharacterized protein (Fragment) n=1 Tax=Eragros... [more]
A0A6P5H2P0_ANACO6.200e-4637.93protein RETICULATA-RELATED 4, chloroplastic-like n... [more]
A0A833R1V6_9POAL1.700e-4539.66Protein RETICULATA-RELATED 4 n=1 Tax=Carex littled... [more]
A0A835H7S3_9MAGN2.320e-4437.93Uncharacterized protein n=2 Tax=Coptis chinensis T... [more]
A0A2T7EEC5_9POAL2.450e-4436.81Uncharacterized protein n=7 Tax=Paniceae TaxID=147... [more]
A0A7S3XYV0_HETAK2.750e-4437.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A4LPZ0_9ERIC3.020e-4437.41Uncharacterized protein (Fragment) n=1 Tax=Rhodode... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1022contigA-nodosum_M_contig1022:162733..167586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZL4
PFAMsRETICULATA-like
Model size3013
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0016020,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons5
Evalue1.57e-111
EggNOG OGs28IK9@1|root,2QQX6@2759|Eukaryota
DescriptionProtein RETICULATA-related
Cds size744
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1022.26.1prot_A-nodosum_M_contig1022.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1022 163043..165459 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866388.889031-UTR-A-nodosum_M_contig1022:162732..1628231680866388.889031-UTR-A-nodosum_M_contig1022:162732..162823Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1022 162733..162823 +
1680866388.9010532-UTR-A-nodosum_M_contig1022:162991..1630421680866388.9010532-UTR-A-nodosum_M_contig1022:162991..163042Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1022 162992..163042 +
1680866388.952389-UTR-A-nodosum_M_contig1022:165459..1675861680866388.952389-UTR-A-nodosum_M_contig1022:165459..167586Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1022 165460..167586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866388.9097257-CDS-A-nodosum_M_contig1022:163042..1630671680866388.9097257-CDS-A-nodosum_M_contig1022:163042..163067Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 163043..163067 +
1680866388.9196532-CDS-A-nodosum_M_contig1022:163256..1635101680866388.9196532-CDS-A-nodosum_M_contig1022:163256..163510Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 163257..163510 +
1680866388.9317117-CDS-A-nodosum_M_contig1022:164770..1650821680866388.9317117-CDS-A-nodosum_M_contig1022:164770..165082Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 164771..165082 +
1680866388.940547-CDS-A-nodosum_M_contig1022:165306..1654591680866388.940547-CDS-A-nodosum_M_contig1022:165306..165459Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 165307..165459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1022.26.1

>prot_A-nodosum_M_contig1022.26.1 ID=prot_A-nodosum_M_contig1022.26.1|Name=mRNA_A-nodosum_M_contig1022.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=248bp
MSVLCSNNGWRARLLGDRAFMTKLAIEMITGTVSQVVAEYQKRGKRFSKE
LEFVLADTLTCLFANYAAIWLSCPTVAVSAAKKGVAKSGGALQHWLASCP
SNAFQKVVTEGGVSKSFSLYQRGAALIIPMPKLFAVGFGATLVGYGLVAG
LENIQAARSRGEVTEGKAGEVKPAVPVLGSSLAIGTFLAVSTNIRYQVIA
GAVEQRMFDAMARPGLSKLGSTFVRSANLYVGSLTIVDWLRFVGLQH*
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mRNA from alignment at A-nodosum_M_contig1022:162733..167586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1022.26.1 ID=mRNA_A-nodosum_M_contig1022.26.1|Name=mRNA_A-nodosum_M_contig1022.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4854bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:162733..167586+ (Ascophyllum nodosum dioecious)
GGCAGGGGACGAAGAGCTCGAGATCGCTGCCGAGGGTCGTCGGCGAGAAA AGATCCGTCAGAGGGTGGACAAGGCCGTTCGGAAGGGACGGGTGAGCCGG CAGCTCGTGGTCGCCGAAAAATGAAGGGAGAGAGAATGTTGTGCGTAAGG TTTTGCTCCCGGCTTGGGCTGATCATCATTTTGTTGTATGCAAGTAGACA ATATTGTAGAATCCCGTCGTGAGTGACCTTTGATCGTGCCCCGCCGCATG TGTGGACAGATCCCCAAGGAGTACAAGCAAGCTTACGCCAGGCTTCTGTC TTCACCAATAATGTCTGTCCTCTGCAGCAACAACGGTAAGCAGCCAATCC TAAACCAGATGAAGATGCTACATGTGCTTTTATCGTATGCTGCGCTCTTA AAAGTAGGGGCAGGAAAGGTCTTCCTGAGTCAAGCCCCGGAAGCTATTTG TCGTAGTTATGCCTAACGCCTCCCTGAGACGAAACCTAACGCGCTGTATA CTGTTCCATTTTTTCCTTGGAAAGGTTGGAGAGCGCGACTGTTGGGCGAC AGAGCGTTCATGACAAAACTGGCCATCGAGATGATCACGGGTACGGTGTC CCAGGTGGTAGCGGAGTACCAAAAACGTGGCAAGCGGTTTTCGAAGGAGC TCGAGTTTGTCCTCGCCGACACGCTGACGTGCCTCTTCGCCAACTATGCC GCAATATGGCTGTCGTGCCCCACCGTGGCTGTCAGTGCTGCCAAGAAGGG AGTGGCTAAGTCCGGCGGAGCCTTGCAGGTAAACTTTCCAGTTTGACTTC GGGAACCGTCAAGTGCATTAGCTTGTGGTACGCTGCTTGACAGTGTTCGC CGTAGAAATGTACTGTACAGTAGTAGTCGGAAACTAGCCCTGTAACGCGC TGCCTATTATAGCTTAGGTGGATAGCTTTGGCTACTACAAGATATAATAC AGTGGGTTTGAGGCCCAGACTGGGATTAGAGGAGGTCGCTAATTTTTTGC TACGAAGTACTATATACAGTCAGTACCTTCCTTCATTTATAGGCCTGCTT AGATTGGAATTAATTTTGGAGGTTAAAAATTCTGGAAAAGAAAATGCTCC GGAAGCGGATAACGACCGCCAAACATTTTAGGCCACATTTACAACGGGAT CTCTTGAAAACAAAAGTCTTGGCTAGCGGGGACAGCAGGTGCTATCGCCC GGTGTAGAATTGTCACGGAGTTATCTCACTGTGTTCCCGCCTGCCTCTTG TAGTAGAGTCTTTTTGACACCAACCATTAGCACTTGCTGTGCAAGGTGGT TCTCGCGACCTACGAAGTAGACTGCAACGGCTTTGCTCGGAGTAATTTCA CTTTGTTGGCTATCCATGCGGAGGAGTCCACACAGCTTGAAAACGATCTC CTCGTGGTTTCGCTTCTTCCGAGGTTTTTCTCCCTCAGAGGCTATCTCCT TCGCGAAACTTGGCTGCTGTATGACACTGCTGTTATTGTACGCACTACAG ATGCAGCAGCAGCTTGAGCACTCGCTGTCGTCTCAGCAATATTCAGTAGT TGCAGCTCTACTGGGTGACTCCATAGGGTATATATAGCTCGAAAGGGTGC CTCCATAGGGTATAGCTCCAAAGGGGTAGCTCCATAGGGTATAACTCCAA AAGGTACCTCCACAGGGGAGCCCCACAGGTAAATGGTGTGCTTGTGCACA AGTTAGTGGGCGCGATAGGAGCGCTGCTCGGCTGCTCAACACAAATTGCA CGTTGTTTGCCGTTGAGCGTGTTTTTTGCAGAAGGTTGGATGGTGTTGGC ATGTTCCTCTTGCCGAAGTTTGGATGGTAAATCCGCTAAAAATGTTCACA AATTATGCCATAGCTAACCGCAACCAGATCTGTGGGCCGACGGCCGGAAT TCCGTGAGGTAGAATATTGGAAATTTGTCTTTCCACTATAAAGAGCGTTA CACCCTACTCACTCTCTCACTAGTAATAATAGTACAGTAACACTAAAATG TACGTATGTCTTGTTTCTTTGTCGCCTCCATCCTTCAGCATTGGTTGGCC TCCTGCCCGTCCAACGCCTTCCAAAAAGTGGTCACGGAAGGGGGGGTTTC CAAGAGCTTCAGCTTGTACCAACGGGGAGCCGCTCTGATCATCCCCATGC CGAAGCTTTTCGCGGTCGGGTTCGGCGCAACCTTGGTCGGGTATGGTCTG GTTGCCGGTCTGGAAAATATTCAAGCGGCAAGGAGCAGAGGGGAAGTAAC AGAGGGGAAAGCTGGGGAAGTCAAGCCTGCTGTCCCCGTGTTGGGCTCCA GCTTGGCGATTGGAACGTTCCTGGCGGTTTCCACGAATATCCGGTACCAG GTACGCATTTCCCCGCACCACACCTTGCGAGGCGTTCCGTGATCGTAGGA TTTTTTCGTGTGTACCATCTTTGGCTCAATTTTTAAGTATCCTGGTTCGA CGTACGTAGCCGGTTTACCGGAGCCAGAGGCAACACCTTCTTGTCTAGTG TTTTCCTCCGACTATATTTCGTCCGCCTGTTGTCGTGGGGTGCGGCTTGC GTCCCTTCGAATCTTGCCACACAGGTGATCGCGGGGGCTGTGGAGCAGAG GATGTTTGACGCCATGGCCAGACCCGGGTTGAGCAAACTGGGCTCCACCT TTGTGCGATCGGCGAACCTGTACGTCGGCTCCCTTACCATCGTCGACTGG CTCCGCTTCGTGGGCTTGCAACACTGATGTTCTGAAGATTCTATTTATAG CCTCTATCGATAGCCTCTGTAGCAGTGTGCTGCTTTGTGCGTCACGCAGA TTCAGGACCATAGTTTTGGTCGTGCTTTTGTGTTAATCGATGTTATCAAT AATGACAGGATTGCGTCGCGAAACGATCCCTATTCTCTGTTCTGGCTGCG CTGCCCCTCTGTGTACCCTGTGCTGTTCCAAGTAGTGTAGTTGCGATGTC GCGAGGTTGCGATTGCTCGAGATCCTCTCCGCTAGCACAGGTGTCTTTGG GGCGCTGTTGAGACGAGAGAGTATACTGCAAGCACTCTGTGCGATTCACT TTCGCTGCTTTTCATTTTTAAGCCGTTCTACAGGATGTTACGATGTTAAG CTTGCTGAAAGCAGTGCGTGGCGTTTCGGATATATTTTTGCCAAATCTCA TAATGATCTTCCGATGCTTTTCTAAATCAGCAAATATGTGCCTGGTTCGT GTTGAAAGCCAACAATAGAGGATTTCCCTCTGGAGGCGTTTTCGAGGTCT CCACGGTACGTCTCACTGGTCAAAGACACTGGGTCTTACCTCATGATTTG GATGGGATAGCTATAAGCTATCCTAAACTGTGGGCTTCGCTACGTGGGCG TGCGTTTTTATTGTATCAATGAAGGCCATGCCACACAAATGATTGCAACA TGGTTTTATTTGAACTCGTTTATGGTAGTGGCTGCAGGCGCTGAGGGTAG CGTCCCCCGTCTCCCCATGGCCTTCAAAGAAAAAAGGGTGAAGTTTCATC ACTCATCATGCTGTGCCTGAACGTTTGTGTCAATTTTTGCAGTTGTAGGC TGAGCGCTCGGGAGTGGGACATCGCCAGCAGGTTATTTGTCGTAATGCAC TAGAAGGCTATGTTGTGGGAGGATGTTCGCAACTCATTCATGAGTGGACA GACGAATAGGACAGACAAGTTCGGAAGACATGTACAGTGATAGTGGTTTT CGTTGACAAGTGAAACGATGTATGCATTGACTGGCGCCGGTGGACTGGAG TTGTGAGAGTAGTGTTCGCTCAAGTGTAGTGACTAAACCGATAAGAATCG CTTTCGGGGGCCGTGATGCAGACAGTACACTAAAGTATTGAGTTTTATGT AGGTGAATCGAATCCAGTACGACCAGCCAGCATGCGAGGATGGGTTGGTG CGGGATGGGTCATTTTTGAACGTCGCGTCAAAGGGCGGCAGACGGGGGAA ACAGACTGGCCAAAATGAATACCGTCGAGGGCATCTGACCGGTGCCTGTG ATGGTTCTGAGAATGAAACGTCAACCCTCCTGCTTTTTGGCGGATGAGTC GCAAATTGGGGTCTCTGGTCTTGAAGAGTAAATCAGGCGTTATGTCGTAA CTCGATTTTGATGTGCGCTATTTATTAATATAAATAGTCATGACTTCCCA ATGGGATTTGTCTTGAATATTGGTTACCCTTCAGCTAGAGTACGCTTGCT TGCTGGCACCCGAGGGATATCGTCGTGCTGATTTCTTTGTTAATGGCAAG GGCATCATCAGTGATGCGAGTGTTTTTGTGGAGCTACGCATCCGCTTTCC GTTTATTGATTTCGGTGATTGGTAACGGCATTATTAATGGGGGGGGGTTG TGAAGCCATGTATTCGCTATCTGTATGGTCGCTGTTCCGTGAAGATCGAA TCACCCTGTTTTTACAGAGTTTTTGGGTATACAAGTGGAATTGTGCACAA ATAGCCTTATTATATTGGCCAGAGTTAACAATCACCGGGCCCTCTCGAAT GTCGAATGCTCGGCTTCTTTTCTTTTATGCAGTAGAGCCTATACCGTGAC AGGCCACGAGCACGTGCACTTGTTATAGGGTACTGTCATAGGGTATAAAA AAATGAGCTGCGCCTGCCGCGTGTTGACGTGTAACATCATCAGTCGAGCC CGATTTTATTTTGCGCTTGGTCTAGTTGTTGCTTCGCTTTTACGTGGGAG AATCCCGAGGTACAGAGTGTACGAATCACACTTTTTAAGAAAACTGTGTG ATCATAATGCAGGACTAGGTTACGGCATTATCTAATGATAGCACTGAAGG TTAAACATGGTTTCAAAGTATAAAAGACGGCATGTGAAGAAGTGTGGCAA TGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1022:162733..167586+

>mRNA_A-nodosum_M_contig1022.26.1 ID=mRNA_A-nodosum_M_contig1022.26.1|Name=mRNA_A-nodosum_M_contig1022.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:162733..167586+ (Ascophyllum nodosum dioecious)
ATGTCTGTCCTCTGCAGCAACAACGGTTGGAGAGCGCGACTGTTGGGCGA
CAGAGCGTTCATGACAAAACTGGCCATCGAGATGATCACGGGTACGGTGT
CCCAGGTGGTAGCGGAGTACCAAAAACGTGGCAAGCGGTTTTCGAAGGAG
CTCGAGTTTGTCCTCGCCGACACGCTGACGTGCCTCTTCGCCAACTATGC
CGCAATATGGCTGTCGTGCCCCACCGTGGCTGTCAGTGCTGCCAAGAAGG
GAGTGGCTAAGTCCGGCGGAGCCTTGCAGCATTGGTTGGCCTCCTGCCCG
TCCAACGCCTTCCAAAAAGTGGTCACGGAAGGGGGGGTTTCCAAGAGCTT
CAGCTTGTACCAACGGGGAGCCGCTCTGATCATCCCCATGCCGAAGCTTT
TCGCGGTCGGGTTCGGCGCAACCTTGGTCGGGTATGGTCTGGTTGCCGGT
CTGGAAAATATTCAAGCGGCAAGGAGCAGAGGGGAAGTAACAGAGGGGAA
AGCTGGGGAAGTCAAGCCTGCTGTCCCCGTGTTGGGCTCCAGCTTGGCGA
TTGGAACGTTCCTGGCGGTTTCCACGAATATCCGGTACCAGGTGATCGCG
GGGGCTGTGGAGCAGAGGATGTTTGACGCCATGGCCAGACCCGGGTTGAG
CAAACTGGGCTCCACCTTTGTGCGATCGGCGAACCTGTACGTCGGCTCCC
TTACCATCGTCGACTGGCTCCGCTTCGTGGGCTTGCAACACTGA
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