mRNA_A-nodosum_M_contig1021.6.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE) HSP 1 Score: 128 bits (322), Expect = 5.320e-32 Identity = 68/167 (40.72%), Postives = 97/167 (58.08%), Query Frame = 1 Query: 7 GVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQ-----------RGSKEKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474 G+ VAM N+F+ L+ CLAT IFAVGTLR NR GV WA + + E+G M R + I +WID ++ + +ST H+F + + EK+ +QP R++Y + MGGVDV DQ+ G++ HRPM +FWRRVF+ QA+ NG++LF Sbjct: 152 GITVAM-DNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSS--RQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQKFAQAVSNGWLLF 315
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.150e-27 Identity = 69/180 (38.33%), Postives = 98/180 (54.44%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQRGSKEKICGPE---------------------KQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILFEK 480 +GV +AM NYF+SP L CLA+H IFAVGT R++RT G A S + +GDM F R G ++ QW D K F +ST+H+ + +G KE+ G + +QP +R DY M GVD+ DQ+ G++ H+ FWRRV++ + QAL N F++F K Sbjct: 488 SGVFIAM-DNYFTSPTLFECLASHDIFAVGTCRADRT--AGADAYLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKG-KEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRK 663
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE) HSP 1 Score: 115 bits (289), Expect = 4.350e-27 Identity = 65/169 (38.46%), Postives = 94/169 (55.62%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIF---------KKQRGSK---EKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474 +GV VAM N+F+ L+ CLAT I+AVGTLR NRTGV W+ + K E+ M R + I +WI ++ +S H+F +++R + EK+ QP R+ Y + MGGVDV DQ+ G + HRPM +FWRRVF+ + A+ N ++LF Sbjct: 178 SGVTVAM-DNFFTGAALLQCLATRDIYAVGTLRGNRTGVDLANYIWSREGTKATEREQMLKARSDELVIVKWIGSQEVHLMSAKHVFAAEWEPLTLERKRAADNNGEKVSS--SQPLARKKYVKNMGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLF 343
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.840e-25 Identity = 58/148 (39.19%), Postives = 84/148 (56.76%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQ-----------RGSKEKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYF 414 +G+ VAM N+F+ L+ CLAT IFAVGTLR NRTGV W + +K E+GDM R + I +WID ++ + +ST H+F+ + + EK+ +QP R++Y + MGGVDV DQ+ + HRPM +F Sbjct: 113 SGITVAM-DNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSS--QQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.960e-25 Identity = 74/178 (41.57%), Postives = 90/178 (50.56%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI------------FK------KQRGSKEKICGPEK---QPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474 +GV +AM NYF+SP L CLA+H IFAVGT RS RT G L S GDM F R G ++ QW D K+ STVHI FK K +G G K QP +R DY + MGGVD DQ+ ++ HR WRRVF+ +MQ L N F+LF Sbjct: 196 SGVFIAM-DNYFTSPTLFACLASHEIFAVGTCRSPRT--CGALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKG----WAGKHKEHDQPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAKIMQMLTNNFLLF 366
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JC56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC56_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 2.230e-19 Identity = 61/157 (38.85%), Postives = 81/157 (51.59%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHIFKKQRGSKEKICGPEKQPPVRRDYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFILF 474 +GV VAM N+F+ L+ LAT IFAV T R NRTGV W+ + +KV E+G M LR S + D + EK+ QP R+++ + MGGVDV DQ G + HRPM +FWRRVF+ QA+ N + LF Sbjct: 225 SGVTVAM-DNFFTGAALLRYLATRDIFAVRTPRGNRTGVDLSNYIWSKEGMKVTERGQM--LRPARTSSKRAADH-----------------NGEKVSS--SQPLARKEHVKNMGGVDVADQWLGAHAHTHRPMTFFWRRVFDQKFSQAVSNAWFLF 359
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.420e-15 Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI 261 +GV++AM NYF+SP L CLA+H IFAVGT RSNRT GG + S + + E+G+M F R GN++ QW+D K+ S++HI Sbjct: 61 SGVYIAM-DNYFTSPTLFECLASHDIFAVGTCRSNRT--GGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHI 143
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 9.430e-15 Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI 261 +G ++AM NYF SP L CLA+H IFAVGT RSNRT GG + S + + E+G+M F R GN++ QW+D K+ S++HI Sbjct: 890 SGAYIAM-DNYFKSPTLFECLASHDIFAVGTCRSNRT--GGAVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHI 972
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A3Q4HNC3_NEOBR (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Neolamprologus brichardi TaxID=32507 RepID=A0A3Q4HNC3_NEOBR) HSP 1 Score: 79.3 bits (194), Expect = 2.200e-14 Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 13 HVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVH-IFKK---QRGSKEKICGPEKQPPVRR---DYCRCMGGVDVTDQKAGTYLCPHRPMNYFWRRVFEHMVMQALVNGFIL 471 ++ V N+++SP L L I GT+R NRTG T + K AE+GD+ ++R G + +W D ++ STVH F QR KE K PV DY + MGGVD++D G Y H+ M ++ + +F H + A+VN F+L Sbjct: 137 YILYVDNFYTSPTLFSDLYKKKISCCGTIRKNRTGFP---RTLKNDFPKKAERGDVRWIRKGELLFVKWTDTREVTMCSTVHKAFSGKTVQRKVKEAAGWTTKAVPVPDCVVDYNKNMGGVDLSDALIGYYTVLHKTMKWY-KTLFYHFLDIAVVNSFLL 292
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Match: A0A6H5JVE2_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE2_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.890e-14 Identity = 55/136 (40.44%), Postives = 66/136 (48.53%), Query Frame = 1 Query: 4 NGVHVAMVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKGDMAFLRWGNISITQWIDKKKFFFLSTVHI------------FK--------KQRGSKEKICGPEKQPPVRRDYCRCMGG 351 +GV +AM NYF+SP L CLA+H IFAV T RS RT G L S + +GDM F R G ++ QW D K+ STVHI FK K R K K QP +R DY + MGG Sbjct: 169 SGVFIAMA-NYFTSPTLFACLASHDIFAVATCRSPRT--CGALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVHIGETGGEGGGINHFKPVLLALKGKGRAGKHK---EHDQPVMRMDYVKYMGG 298 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1021.6.1 >prot_A-nodosum_M_contig1021.6.1 ID=prot_A-nodosum_M_contig1021.6.1|Name=mRNA_A-nodosum_M_contig1021.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=153bp MVGNYFSSPVLMGCLATHLIFAVGTLRSNRTGVGGPLATWASKNVKVAEKback to top mRNA from alignment at A-nodosum_M_contig1021:218742..219512+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1021.6.1 ID=mRNA_A-nodosum_M_contig1021.6.1|Name=mRNA_A-nodosum_M_contig1021.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=771bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:218742..219512+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:218742..219512+ >mRNA_A-nodosum_M_contig1021.6.1 ID=mRNA_A-nodosum_M_contig1021.6.1|Name=mRNA_A-nodosum_M_contig1021.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:218742..219512+ (Ascophyllum nodosum dioecious)back to top |