mRNA_A-nodosum_M_contig102.51.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 188 bits (477), Expect = 2.320e-52 Identity = 94/133 (70.68%), Postives = 110/133 (82.71%), Query Frame = 3 Query: 720 SFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 +F GK+GIF FT + AQR+SRNRAAGTMETK VEVTK V+K+K++DEVFPAIK WPGG + +Q DN P+H+IN DPD+VAAG ADGW+IRLINQP NSPDTNILDL FFN++QSLQDR T RTVDE I Sbjct: 87 NFTGKLGIFQFTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFI 219
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 181 bits (458), Expect = 3.890e-47 Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 3 Query: 642 QHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGGPSPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 QHKSH+ KVMFLA V RPR+D+ +R FDGKIGI+PFT + AQR+ RN AAGTM T VEV + +YK K+ + VFP I+ +P P + QQ+NAP H+ +DPD+VAA I L+NQPPNSPD NILDL FFNSIQSLQDRTT TV+EL+ Sbjct: 88 QHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPI-IFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFFNSIQSLQDRTTPTTVEELV 243
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: UPI000B906F28 (uncharacterized protein LOC110892967 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B906F28) HSP 1 Score: 165 bits (418), Expect = 3.350e-44 Identity = 86/162 (53.09%), Postives = 114/162 (70.37%), Query Frame = 3 Query: 636 TRQHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 T + K I KVMFLA V RPR+DT N F GKIGIFPFT+ PA+RSS+NR AGT+ETK ++ V K V + ++D+V PAI+ WP G + P+ +QQDNA H DD + + DG++IRL QPPNSPD N+LDL FF++IQSLQ++ L ++DEL+ Sbjct: 46 TCKSKKFITKVMFLAAVARPRFDTSGNERFSGKIGIFPFTKLEPAKRSSKNRVAGTLETKPILSVIKEVTRSWLIDKVLPAIRDKWPQGHTGPIFIQQDNAKPHNNIDDEQFIQEASRDGFDIRLRFQPPNSPDLNVLDLGFFHAIQSLQEQEVLGSIDELV 207
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A6H5JRZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ6_9PHAE) HSP 1 Score: 160 bits (406), Expect = 9.600e-44 Identity = 89/153 (58.17%), Postives = 111/153 (72.55%), Query Frame = 3 Query: 669 MFLAVVGRPRWDTVANRSFDGKIGIFPFT----RRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGGPSPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 MFLA V RPR+D+ NR FDGKIGI+PFT + AQR+SRNRAAGT+ T+ VEV + YK+K+++ V P I+ +P S V QQD+AP H++ D P+IVAA A G I LINQP NSPD N+LDL FFNSIQSLQDRTT T+D+L+ Sbjct: 1 MFLAAVARPRFDSSRNRHFDGKIGIYPFTVQRAAQRAAQRNSRNRAAGTIVTRSVEVNRVTYKEKLINNVLPDIRAKFPAV-STVFAQQDSAPGHRVMD-PEIVAAA-AQGRRIELINQPANSPDMNVLDLGFFNSIQSLQDRTTPTTIDQLV 150
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A392MRR2_9FABA (Transposase n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MRR2_9FABA) HSP 1 Score: 162 bits (409), Expect = 3.760e-43 Identity = 82/163 (50.31%), Postives = 116/163 (71.17%), Query Frame = 3 Query: 636 TRQHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS--PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 T Q K+ + KVMFL V+ RPR+D N +FDGKIG+FPF + A+R+S NRAAGT+ TK ++ VT+ + ++ ++++V PAIK WP P+ +QQDNA H D + A TADG++IRL+ QPPNSPD NILD+ FF+SIQS+Q++ T +T+DEL+ Sbjct: 20 TCQSKNFVPKVMFLVVIARPRFDAEGNVTFDGKIGVFPFITKETAKRTSVNRAAGTLVTKPIISVTREISRKFLIEKVVPAIKEKWPRDEIGYPIFIQQDNARCHVSVKDAEFCAVATADGFDIRLMCQPPNSPDLNILDIGFFSSIQSIQEKITTKTIDELV 182
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A484N2E0_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N2E0_9ASTE) HSP 1 Score: 165 bits (418), Expect = 3.960e-43 Identity = 87/161 (54.04%), Postives = 105/161 (65.22%), Query Frame = 3 Query: 636 TRQHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEV-TKAVYKQKMLDEVFPAIKRTWPGGPSPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 T Q KS I K+MFLA VGRPR+ +DGKIGIFPFT PAQRSS+NR AGTME K + + + V K +L ++ PAIK WPG + VQQDN H DPD++ A D WNI+L QPPN PD N+LDL FF SI SLQD+T R++ ELI Sbjct: 188 TIQSKSFIPKIMFLADVGRPRYGEDGELLWDGKIGIFPFTYEAPAQRSSKNRPAGTMEVKPIPIINREVMKMMLLTKLLPAIKEKWPGPSRNIIVQQDNVKPHVDGSDPDLMEAAQEDNWNIQLKFQPPNRPDLNVLDLGFFRSIDSLQDQTAARSLTELI 348
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A6A4ZTP8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZTP8_9STRA) HSP 1 Score: 159 bits (403), Expect = 4.430e-43 Identity = 82/159 (51.57%), Postives = 105/159 (66.04%), Query Frame = 3 Query: 648 KSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELIIS 1121 K HI KVMFL V RPRWD +R +DGKIG +PF AQR S+NR G TK + VTK VY+Q ++D+V PAIK WPG + +QQDNA H D + +AG DGW+I+L QP SPD N+LDL FFN+IQSLQ R+ +T+DEL+++ Sbjct: 37 KRHIVKVMFLTAVARPRWDFKRHRMWDGKIGTWPFIEHTVAQRRSKNRDKGAPITKPMNVTKKVYRQYLIDKVIPAIKSQWPGQHHHTIYLQQDNAKPHVAVSDSAVCSAGHEDGWDIKLTAQPAMSPDFNVLDLGFFNAIQSLQHRSLTQTIDELVVA 195
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A6A4Z2B2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z2B2_9STRA) HSP 1 Score: 167 bits (423), Expect = 8.730e-43 Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = 3 Query: 636 TRQHKSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGGPSP-VSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 T + K I KVMFL+ V RPRWD+ FDGK+G + FT +VPA R SRNR AGT+ T V VT++VYK +LD V PAIKR WP S +++QQDNA H D DIVAA T+DGW + + QPPNSPD NILDL FF +IQSLQ + R +D+++ Sbjct: 217 TCKSKKFITKVMFLSAVARPRWDSAKGELFDGKLGTWHFTTKVPAARGSRNRPAGTLVTSPVSVTRSVYKAMLLDHVIPAIKRKWPSTESKKITIQQDNARPHIPPRDHDIVAACTSDGWAMEVKYQPPNSPDMNILDLGFFRAIQSLQVKNHSRCIDDIV 377
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: UPI000B8F2756 (uncharacterized protein LOC110913170 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI000B8F2756) HSP 1 Score: 165 bits (418), Expect = 1.180e-42 Identity = 87/158 (55.06%), Postives = 112/158 (70.89%), Query Frame = 3 Query: 648 KSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETK-MVEVTKAVYKQKMLDEVFPAIKRTWPGGPS-PVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 K I KVMFLA V RPR+DT+ N F GKIGIFPFT+ PA+RSS+NR AGTMETK ++ VTK V + ++D+V PAI+ WP G + P+ +QQDNA H DD V + G++IRL QPPNSPD N+LDL FF +IQSLQ++ L ++DEL+ Sbjct: 200 KKFITKVMFLAAVARPRFDTLGNEIFSGKIGIFPFTKLEPAKRSSKNRVAGTMETKPILSVTKEVTRSWLIDKVLPAIRDKWPQGHTGPIFIQQDNAKPHISIDDEQFVQEASRGGFDIRLRFQPPNSPDLNVLDLGFFRAIQSLQEQEVLGSIDELV 357
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Match: A0A397C8F5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F5_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.440e-42 Identity = 83/157 (52.87%), Postives = 106/157 (67.52%), Query Frame = 3 Query: 648 KSHIQKVMFLAVVGRPRWDTVANRSFDGKIGIFPFTRRVPAQRSSRNRAAGTMETKMVEVTKAVYKQKMLDEVFPAIKRTWPGG-PSPVSVQQDNAPAHKINDDPDIVAAGTADGWNIRLINQPPNSPDTNILDLFFFNSIQSLQDRTTLRTVDELI 1115 K HI KVMFL V RPR+D V +DGK+G++PF PAQR+S+NR GT+ T V VTK VY++ +L V P IK WPG P+ +QQDNA H DDP +VAAG +DGW I+L+ QP SPD N+LDL FFNSIQ+LQ R + +D+L+ Sbjct: 67 KRHIVKVMFLTAVARPRFDYVRKTMWDGKLGMWPFVAVQPAQRTSKNRDRGTLVTTPVTVTKKVYREYLLQHVIPRIKAVWPGHRDQPIYIQQDNARPHVEVDDPAVVAAGRSDGWAIQLVAQPAMSPDFNVLDLGFFNSIQALQHRQVVTGIDDLV 223 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig102.51.1 >prot_A-nodosum_M_contig102.51.1 ID=prot_A-nodosum_M_contig102.51.1|Name=mRNA_A-nodosum_M_contig102.51.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=318bp MPGSGSAAPKATRNNLTEKQRHRLVEHLLKGSQKGKLARGDLKKAAADFSback to top mRNA from alignment at A-nodosum_M_contig102:242138..243500- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig102.51.1 ID=mRNA_A-nodosum_M_contig102.51.1|Name=mRNA_A-nodosum_M_contig102.51.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1363bp|location=Sequence derived from alignment at A-nodosum_M_contig102:242138..243500- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig102:242138..243500- >mRNA_A-nodosum_M_contig102.51.1 ID=mRNA_A-nodosum_M_contig102.51.1|Name=mRNA_A-nodosum_M_contig102.51.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at A-nodosum_M_contig102:242138..243500- (Ascophyllum nodosum dioecious)back to top |