mRNA_A-nodosum_M_contig10180.2.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 105 bits (262), Expect = 1.140e-24 Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231 +P+Y DNT+TLH GNR++S R KHI LR+FF++E+V EG I+IHYV T+D LAD+GTKH KHR L+ LIN+F Sbjct: 1589 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.870e-24 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231 +P+Y DNT+TLH GNR++S R KHI LR+FF++E+V EG I+IHYV T+D LAD+GTKH HR L+ LIN+F Sbjct: 920 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 103 bits (256), Expect = 3.860e-24 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231 +P+Y DNT+TLH GNR++S R KHI LR+FF++E+V EG I+IHY T+D LAD+GTKH KHR L+ LIN+F Sbjct: 360 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 6.230e-24 Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDF 231 +P+Y DNT+TLH GNR++S R KHI LR+FF++E+V EG I+IHY T+D LA +GTKH KHR L+ IN+F Sbjct: 135 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 103 bits (256), Expect = 7.110e-24 Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIND 228 +P+Y DNT+TLH GNR++S R KHI LR+FF++E+V EG I+IHYV T+D LAD+GTKH KHR L+ LIN+ Sbjct: 581 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINN 655
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.640e-22 Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 1 SVPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLI 222 S PLY+ NT+TLHV GN+T+S R KH+ LR+F+++EIV+EG I+IHY+ T+D LAD+GTKHL K RH LI I Sbjct: 613 SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKI 685
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 4.190e-22 Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLIN 225 VPLY DNT+TLH GNR++S R KHI LR+F+++E++ EG I+IHY+ T +AD+GTKHL KHR L+ +I+ Sbjct: 1090 VPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 6.710e-21 Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237 VPLY DNT+TLH GNR++S R KHI LR+FF++++V EG I IH+V T AD+GTKHL K R L+ +I +F Sbjct: 278 VPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 6.900e-21 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRT-YSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237 VPLY DNT+TLH GNR+ +S R KHI LR+F+++E+V EG I+IHY+ T AD+GTKHL KHR L+ +I+ F Sbjct: 901 VPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.270e-20 Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 4 VPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTQDQLADLGTKHLGKHRHLALIKLINDFKA 237 VPLY DNT+TLH GNR+YS KHI LR+FF++E+V EG I IHYV AD+GTKHL K R L+ +I +F Sbjct: 643 VPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10180.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10180.2.1 >prot_A-nodosum_M_contig10180.2.1 ID=prot_A-nodosum_M_contig10180.2.1|Name=mRNA_A-nodosum_M_contig10180.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp SVPLYLDNTSTLHVAGNRTYSRRAKHIVLRYFFVQEIVEEGMITIHYVNTback to top mRNA from alignment at A-nodosum_M_contig10180:4865..5104+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10180.2.1 ID=mRNA_A-nodosum_M_contig10180.2.1|Name=mRNA_A-nodosum_M_contig10180.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10180:4865..5104+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10180:4865..5104+ >mRNA_A-nodosum_M_contig10180.2.1 ID=mRNA_A-nodosum_M_contig10180.2.1|Name=mRNA_A-nodosum_M_contig10180.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig10180:4865..5104+ (Ascophyllum nodosum dioecious)back to top |