mRNA_A-nodosum_M_contig1016.4.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 275 bits (702), Expect = 6.050e-79 Identity = 175/489 (35.79%), Postives = 257/489 (52.56%), Query Frame = 2 Query: 155 IPEMENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAA-LSDELVEDLAAFATLVFT-SRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWR--RFGSS*VSAGSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 + E + FE + +KK NPQSA G GLR+S+LQA +SD E LA F+ VF LP FW L SANL ALG+K RP+A G VLRR+I FC +Y +A+ F++ G + GGVEI+ TA L ++G T LS+DG N +NS+ LPA+A P +V Y N+Y R KL V + R + G + G V +L + + + + G ++ H G +I +T+W+QERL +GI L+ KS+ L G+ L +++ + GL+V GM VVG+PVGT F+RNF+ ++ G+P + + L ++D QAS++ L LS RL HLLRT+ PSIT AA ++ + WA+ I++ A + +PT +EV DPT + + + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 113 VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQA-----------HLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVTEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 589
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 277 bits (709), Expect = 1.380e-78 Identity = 176/489 (35.99%), Postives = 258/489 (52.76%), Query Frame = 2 Query: 155 IPEMENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAA-LSDELVEDLAAFATLVFT-SRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWR--RFGSS*VSAGSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 + E + FE + +KK NPQSA G GLR+S+LQA +SD E LA F+ VF LP FW L SANL ALG+K RP+A G VLRR+I FC +Y +A+ F++ G + GGVEI+ TA L ++G T LS+DG N +NS+ LPA+A P +V Y N+Y R KL V + R + G + G V +L + + + + G ++ H G +I +T+W+QERL +GI L+ KS+ L G+ L +++ + GL+VA GM VVG+PVGT F+RNF+ ++ G+P + + L ++D QAS++ L LS RL HLLRT+ PSIT AA ++ + WA+ I++ A + +PT +EV DPT + + + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 113 VAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQA-----------HLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 589
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 277 bits (708), Expect = 1.790e-77 Identity = 167/479 (34.86%), Postives = 256/479 (53.44%), Query Frame = 2 Query: 155 IPEMENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSDELVEDLAAFATLVFTSRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKLPVYIRWRRFGSS*VSAGSTVRM---------LSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRH-----GSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVL 1549 I +E F TV A I++ NPQ + G SGLR+S LQ++L+ EL E +A +++F LP FW L SANL A+G K RP+A GD+ RR++G V C +YG LA++F+ G GVA+ GG E++ A L ++G L+YD N FNS+ LPALA+++P ++PYA+N+Y REPPKL + G + + + + V+ + L L R + V Q + + LP++ + E +T W+Q + G++LNR KS+ L G K E+ R + T L VA GMR+VGVPVG + + ++ GEPT ++ + ++D QAS + L SA++RL LLR++ P +T +AA++++ VE L +I+ + S G P E + + + L +RQ L +REGGLG+ S+ I A++G LVL Sbjct: 1151 IEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKL---LYKTDSGMAVIPSATGVQQGCNLGPLCYSAGLLKLLRDFRANPPVVGAQLMAFIDDLVVL------------LPKNHACNPAAAEAVTTWIQANMQPLGVALNRSKSKILFPPGTDVKSWPEKDRETLERTQLAVAEGGMRIVGVPVGEPDYIKRSALDIARGEPTDLLKEIASLDDAQASLQILRFSAATRLNFLLRSLPPDLTKEAASEFDKSVEQTLETIL---NGPSQPGEHAPHEPTEENSPSLPRLNLSPVGIRQARLPVREGGLGIPSTVDISGPAFIGGQALVL 1611
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 243 bits (621), Expect = 3.040e-66 Identity = 156/449 (34.74%), Postives = 233/449 (51.89%), Query Frame = 2 Query: 272 LSDELVEDLAAFATLVFT-SRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWR--RFGSS*VSAGSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 +SD E LA F+ VF LP W L SANL ALG+K RP+A G VLRR+I F +Y +A+ F++ G + GGVEI+ TA L ++G T LS+DG N +NS+ LPA+A + P +V Y N+Y R KL V + R + G + G V +L + + + + G ++ H G +I +T+W+QERL +GI L+ KS+ L G+ L +++ + GL+VA GM VVG+PVGT F+RNF+ ++ G+P + + L ++D QAS++ L LS RL HLLRT+ PSIT AA ++ + WA+ I++ A + +PT +EV DPT + + + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMKEFNNKPPVPGVKLIGYVDDLQA-----------HLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 437
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5KKJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ7_9PHAE) HSP 1 Score: 151 bits (382), Expect = 3.660e-35 Identity = 85/233 (36.48%), Postives = 132/233 (56.65%), Query Frame = 2 Query: 884 SHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 +H G +I +T+W+QERL +GI L+ KS+ L G+ L +++ + GL+VA GM VVG+PVGT F+RNF+ ++ G+P + + L ++D QAS++ L LS RL LLRT+ PSIT AA ++ + WA+ I++ A + +PT +EV DPT + + + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 24 AHLPPGLARNMQAISTVTNWIQERLSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFQLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 255
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 142 bits (357), Expect = 9.650e-32 Identity = 138/471 (29.30%), Postives = 213/471 (45.22%), Query Frame = 2 Query: 167 ENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSDELV-EDLAA-----FATLVFTSRVLPHGFWTLKASANLCALGQKARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKLPVYI-----RWRRFGSS*VSAGSTVR--MLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHL-AEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVN-GEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQ-TQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLG 1531 E F+ + VI + S AG G R+SHL++ + ++ ED + LV P FWTL ++L ALG+K RPV G RR+I A ++ KL + F+ GVA++GGVE + + A L + G + D +N FN+ + A+ +P +V Y + Y E P VY R +S V G + + S + + +D G + + +H + S++ +TD + E L GI +NR KS AL P H+ ++QR + GLTVA +G+ VVGVP+GT ++ R F +V+ G K R+L M D Q + LS R ++ R + P++T +A + V+WAL + + G + EE CQ T LR QT L GGLG++S+ + +A LG Sbjct: 535 EEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCY-DEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKDLTEE---------SVQAMTDLVDE-LAEVGIVVNRAKSSAL----PPPGHMITDQQRRLLEGVGLTVAGEGITVVGVPIGTDNYVREFAMKVITEGGAEKLARMLPLMSDRQVANLITSLSLIQRSAYIERGIDPTLTKEACERLDNMVQWALETGM------GIEGTESEEEFFQQG--CQDTDLKLRPYQRAQTQLSTGAGGLGVSSAVMRRFSASLG 982
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5L2W9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W9_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.680e-31 Identity = 79/217 (36.41%), Postives = 123/217 (56.68%), Query Frame = 2 Query: 932 LTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 +T+W+QER +GI L+ KS+ L G+ L +++ + GL+VA GM VVG+PVGT F+RNF+ ++ G+P + + L ++D QAS++ L LS RL HLLRT+ PSIT AA ++ + W + I++ A++ + T +E DPT + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 7 VTNWIQERFSQKGIELSLPKSKVLFPEGLCMSSLTNDEQQQLTKIGLSVAEGGMPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWTMRKIVLG-KMANSMRISTVKEERADPTKSEEVDSFNATARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 222
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5KFL6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFL6_9PHAE) HSP 1 Score: 117 bits (292), Expect = 8.090e-27 Identity = 64/164 (39.02%), Postives = 97/164 (59.15%), Query Frame = 2 Query: 1091 MRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLRIREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 M VVG+PVGT F+RNF+ ++ G+P + + L ++D QAS++ L LS RL HLLRT+ PSIT AA ++ + WA+ I++ A + +PT +EV DPT + + + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 1 MPVVGIPVGTEEFQRNFVSKIARGDPAELILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSITNSAAKIHDNMMMWAMSKIVLG-KMADSMRIPTVKEVRADPTKSEEVDFFKGTARAQVHLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 163
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A836CGN9_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGN9_9STRA) HSP 1 Score: 118 bits (296), Expect = 3.840e-24 Identity = 126/490 (25.71%), Postives = 195/490 (39.80%), Query Frame = 2 Query: 176 FEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSD-----ELVEDLAAFATLVFTSRV-LPHGFWTLKASANLCALGQ-------KARPVACGDVLRRVIGAVFCSRYGRKLADYFQSWGPCGVAISGGVEIMGLTATLGFEEGYTTLSYDGANVFNSICHLRFLPALAEIVPLVVPYASNLYIREPPKL---------PVYIRWRRFGSS*VSA-----GSTVRMLSRLFLLHRRLTEDTENVQGQSTGTRSESGFVHR*HCSHSTTGTLPRHGSIEKLTDWLQERLGVEGISLNRRKSQALLLYGVGPKHLA-EEQRTARDETGLTVA-------RQGMRVVGVPVGTVHFKRNFLQEVVN--GEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYL--RHEVLRQTHLRIREGGLGLTSSNSIKSAAYL 1528 E TV +I++ +P S AGLSGLRYSHLQ AL E L + V LP FW L + L L + K RP+ CG+VL+R+ +V+ + LA+ + G GVA+S G E + L +E G+ D N FN + L +A +P + Y Y+R P+L + + R F +A G+ + L R N + R G + + T I+ + L++ G+ LN KS+AL G H+ + +R + G+ + +G ++GVPVG F +L+ G + + +A F L R+ + LRT+ + T AA +++ +W L + GL P + +L R L+Q L R GGLG+TS+ I AAY+ Sbjct: 320 IEPETVAKLIQRASPYSGAGLSGLRYSHLQDALRTSWGRHEFAAVLTRWLQTVMREAARLPDAFWQLHGAGRLTPLAEQQEDGTAKQRPIVCGEVLQRLCTSVYVADRKDFLAELLEPDGQYGVAVSAGAEKAAMAGKLAYELGHWQFMLDLKNAFNMVFVLAAAEWVAAQLPDFLDYFIGTYVRTRPRLLFQHVDGSTRIIMSQRGFKQGDPAAPMLFCGAIAQCLKRF------------NEAAAAQRARRRMG-AYMDDANVRTGARTLTQDDIQAVAQ-LKQHFAEVGLELNLTKSRAL----PGRGHVVTDHERQLLQQLGVQLVGDTDENQNRGAVLLGVPVGHSSFVDAWLRREAGAGGAGARFAERCARLTSPRAMFRLLRYCVVPRMTYCLRTIPTTQTAPAAKEWDRVTQWVL---------EHSMGLQPPGQTWRQFEQSGAHFHLAARGPALQQARLPTRHGGLGITSACDIADAAYV 782
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Match: A0A6H5KED8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED8_9PHAE) HSP 1 Score: 110 bits (276), Expect = 2.540e-23 Identity = 67/187 (35.83%), Postives = 104/187 (55.61%), Query Frame = 2 Query: 1031 LAEEQRTARDETGLTVARQGMRVVGVPVGTVHFKRNFLQEVVNGEPTKPVRVLVPMEDGQASFESLHLSASSRLPHLLRTVLPSITYQAAADYEG*VEWALMSIIIACDEASAAGLPTPEEVVHDPTVCQTQTYLRHEVLRQTHLR---IREGGLGLTSSNSIKSAAYLGCHTLVLLASSPPPSGGT 1582 L +++ + GL VA GM VVG+PVGT F+RNF+ + G+P + L ++D QAS++ L LS RL HLLRT+ PSI AA +++ + WA+ I++ A + + T +EV +PT + + + Q HL +REGGLG+TS+ I+ +A++ LV S +G T Sbjct: 4 LTNDEQQQLTKIGLPVAEGGMSVVGIPVGTEEFQRNFVSKFAGGDPADLILRLATLDDPQASYQLLRLSGVPRLFHLLRTIAPSIANSAARNHDN-LMWAMSKIVLG-KMADSMRISTEKEVRANPTKREEVEFFKGTARAQVHLPXLPMREGGLGITSNVLIRESAFVAGQALVFSKSVQASTGYT 188 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1016.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1016.4.1 >prot_A-nodosum_M_contig1016.4.1 ID=prot_A-nodosum_M_contig1016.4.1|Name=mRNA_A-nodosum_M_contig1016.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=194bp MENLFEEATVNAVIKKPNPQSAAGLSGLRYSHLQAALSDELVEDLAAFATback to top mRNA from alignment at A-nodosum_M_contig1016:6323..7987- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1016.4.1 ID=mRNA_A-nodosum_M_contig1016.4.1|Name=mRNA_A-nodosum_M_contig1016.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1665bp|location=Sequence derived from alignment at A-nodosum_M_contig1016:6323..7987- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1016:6323..7987- >mRNA_A-nodosum_M_contig1016.4.1 ID=mRNA_A-nodosum_M_contig1016.4.1|Name=mRNA_A-nodosum_M_contig1016.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at A-nodosum_M_contig1016:6323..7987- (Ascophyllum nodosum dioecious)back to top |