mRNA_A-nodosum_M_contig1015.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1015.20.1
Unique NamemRNA_A-nodosum_M_contig1015.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 305 bits (780), Expect = 5.670e-94
Identity = 180/468 (38.46%), Postives = 275/468 (58.76%), Query Frame = 1
Query:   10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            P+   +A   H+ DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E Y P     S+R +LA   A+  E+   D + AFL  +++EEIY+E+PE  ++             V  L +++YGL QA R WN      + + GFE A  DPCV+ +  +GE E +V ++VDD+L  ++ +A +    A +  KF++KD+G A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   GVQ L+KADEPQ  E K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G   EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    ++GA  ++EDN+GA+ LA N
Sbjct:   66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKN 529          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.160e-90
Identity = 157/375 (41.87%), Postives = 235/375 (62.67%), Query Frame = 1
Query:  256 EKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            E Y PT + +S+R+L A A  ++  LRHFD +QAF+++D+DE++++ +PE   +  G + +LNK++YGL QA R W++     +  +GF Q   D CVFR + +G   + +VVHVDDI +  +++   ++F  +L     +K++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G++ LS+ D+      EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 377          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 304 bits (778), Expect = 1.350e-90
Identity = 180/468 (38.46%), Postives = 277/468 (59.19%), Query Frame = 1
Query:   10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            P+   +A    + DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E Y P     SIR +L   +A+  E+   D + AFL   ++ EIY+E+PEE ++             V  L +++YGL QA R WN     ++ ++GFE A  DPCV+ +  +GE E +V ++VDD+L  ++  A +    A +  KF++KDMG A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   GVQ L+KADEPQ  E K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  +EAY+D+D+    D RRSVSG +LML +  + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    ++GA  ++EDN+GA+ LA N
Sbjct:  397 PKTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKN 860          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 297 bits (761), Expect = 1.870e-90
Identity = 181/468 (38.68%), Postives = 276/468 (58.97%), Query Frame = 1
Query:   10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQKFPGAVGR------LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            P+   +A    + DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E Y P     SIR +LA  +A+  E+   D + AFL   ++EEIY+E+ E   E  +   A G       L +++YGL QA R WN      + ++GFE A  DPCV+ +  +GE E +V ++VDD+L  ++ +A +    A +  KF++KDMG A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   GVQ L+KADEPQ  E K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    ++GA  ++EDN+GA+ LA N
Sbjct:  131 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAMALAKN 594          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 293 bits (751), Expect = 2.600e-89
Identity = 177/468 (37.82%), Postives = 271/468 (57.91%), Query Frame = 1
Query:   10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---------EFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            P+   +A    + DEW KA  +E+  +V N  +  V +P  +  IG + ++  K  +  +  +YK RLVA+G+ Q   + Y E Y P     SIR +L   +A+  E+   D + AFL   ++EEIY+E+PE         E Q     V  L +++YGL  A R WN+     + ++GFE A  DPCV+ +  +GE E +V ++VD++L  ++ +A +    A +  KF++KD+G A + +G  I  N + R L   Q  Y ES++K F  +  K    P   GVQ L+KADEPQ  E K +MK  PYR  VG+LM+ A  TRPD++ AV  ++RF ENPG  H  + +K  +YLL TK+ GI Y GQ  G ++EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    ++GA  ++EDN+GA+ LA N
Sbjct:   99 PKTYAEATTRQDQDEWMKAIASELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATEIYEDNQGAMALAKN 562          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.320e-88
Identity = 157/375 (41.87%), Postives = 235/375 (62.67%), Query Frame = 1
Query:  256 EKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            E Y PT + +S+R+L A A  ++  LRHFD +QAF+++D+DE++++ +PE   +  G + +LNK++YGL QA R W++     +  +GF Q   D CVFR + +G   + +VVHVDDI +  +++   ++F  +L     +K++GD  +Y GC   R+  A  LK  Q  Y E +   F V+   +IP   G++ LS+ D+      EE+  +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P   H +A + I  Y++ T + GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW SR Q+     T+EAEYV+L++V+K+VLFLRQV  FM P   +  + VFEDN+GAI+LA N
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 551          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 287 bits (735), Expect = 2.900e-88
Identity = 170/423 (40.19%), Postives = 250/423 (59.10%), Query Frame = 1
Query:    7 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFP--GAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKADEPQN-PEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1260
            +P++  +AM+S + D+W +A E+EM  M  N V+  V   K    IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E + P     SIR+LLA AA  D E+   D + AFL  ++ EE+Y+  PE F        V +L ++IYGL QA R WN +F + +    F + + +PCV++K+  G + + +V++VDDIL    D  +M      L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++K  +  +P   GV +LS+ + P+   E+E M   PY  AVGA+M+  T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+  + YG     L ++ YTD+ F +  D  +S+SG V  L  GAISW S  Q   A  T+EAEY+A SE
Sbjct:   92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADSTTEAEYIAASE 510          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 295 bits (756), Expect = 4.330e-88
Identity = 183/459 (39.87%), Postives = 264/459 (57.52%), Query Frame = 1
Query:    4 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKF--PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQ-VQEF-MEPSMRLGAVNVFEDNEGAI 1362
            ++P   ++AM   + + W+KA E+EM  M  N V+  V +P+    IG K +YKRK+G  GKVE YK RLVA+G+ Q  G+ Y E + P     SIR+LL+ AA  D E+   D + AFL  +I EEIY++ P  F        V +L K+IYGL QA R WN +F + + + GF Q   +PCV++KV  G     ++++VDDIL    D   M+     L   F +KD+G+A Y +G  + R+RK R L   Q  Y++ ++ RF+++   K   P   GV            E+E+M+  PY  AVG+LM+A   TRPDI  AV  V+R+  NPG  H  AV  I +YL  TK + + +G +   L ++ YTDSDF + +D R+S+SG V  L KGAISW S  Q+ TA  T EAEY+A SE  K+ +++R+ +QE  + PS+    + +  DN GAI
Sbjct:  313 NDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKV-SGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKEAVWIRKFIQELGVVPSIE-SPITIHCDNNGAI 767          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 4.760e-88
Identity = 176/459 (38.34%), Postives = 258/459 (56.21%), Query Frame = 1
Query:    7 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVAR-PKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            EP + ++A +S   + W  A   E  G+V    +    + P    VI  + ++K K  + GK+ K K RLVA+GF Q  G+ Y   + PT +AASIR+L+A A   + EL H D EQAF++  +D  +++++P       G V RLNK++YGL QA R +  +   D+  IGFEQ+  DPCV R ++  E   +V +HVDDIL +A  ++      A LG     K++G+ ++++GC   R+R+A  ++  Q  Y+ S+++RFNV + + IPA+  V   S        E EE    P+RE VG  MW A+ TRPDI+  VRAVAR    P L+H KA  KI  YLL T    + +       +    Y D+DF +    RRSVSGA++ +A   + W SR Q+  A  TSEAEY+A+ + VK+ LF   + +F+ PS +   + V EDNEGAI LA N
Sbjct:  166 EPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDIL-YAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVM------ENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADN 617          
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 296 bits (759), Expect = 5.220e-88
Identity = 181/468 (38.68%), Postives = 276/468 (58.97%), Query Frame = 1
Query:   10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQKFPGAVGR------LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377
            P+   +A    + DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLVA+G+ Q  G++Y E Y P     SIR +LA  +A+  E+   D + AFL   ++EEIY+E+ E   E  +   A G       L +++YGL QA R WN      + ++GFE A  DPCV+ +  +GE E +V ++VDD+L  ++ +A +    A +  KF++KDMG A + +G  I  N + R L   Q  Y ES++K+   +  K    P   GVQ L+KADEPQ  E K +MK  PYR  VG+LM+ +  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  +EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    ++GA  ++EDN+GA+ LA N
Sbjct:  375 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKN 838          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3Q908_9STRA5.670e-9438.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JLN0_9PHAE1.160e-9041.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3YGI7_9STRA1.350e-9038.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA1.870e-9038.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA2.600e-8937.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KQB8_9PHAE1.320e-8841.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3MAN7_TRIPR2.900e-8840.19Retrotransposon protein putative Ty1-copia subclas... [more]
A0A2N9IUC8_FAGSY4.330e-8839.87Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE4.760e-8838.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0QQ26_9STRA5.220e-8838.68Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1015contigA-nodosum_M_contig1015:202415..203791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1377
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.02e-80
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size1347
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.0094354-UTR-A-nodosum_M_contig1015:202414..2024441680866375.0094354-UTR-A-nodosum_M_contig1015:202414..202444Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1015 202415..202444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866375.0207207-CDS-A-nodosum_M_contig1015:202444..2037911680866375.0207207-CDS-A-nodosum_M_contig1015:202444..203791Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1015 202445..203791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1015.20.1prot_A-nodosum_M_contig1015.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1015 202445..203791 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1015.20.1

>prot_A-nodosum_M_contig1015.20.1 ID=prot_A-nodosum_M_contig1015.20.1|Name=mRNA_A-nodosum_M_contig1015.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=449bp
MESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQ
DGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGE
LRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRC
WNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQ
ATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESM
VKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWA
ATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQ
GCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGT
SEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN
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mRNA from alignment at A-nodosum_M_contig1015:202415..203791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1015.20.1 ID=mRNA_A-nodosum_M_contig1015.20.1|Name=mRNA_A-nodosum_M_contig1015.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1377bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:202415..203791+ (Ascophyllum nodosum dioecious)
ATATCAGAACCAAGGAATCGGCGACAGGCGATGGAATCGCATGAATGGGA CGAATGGCGGAAGGCAGAAGAGACTGAGATGCTTGGAATGGTCGAGAACT GCGTTTATGATCAGGTGGCTCGGCCGAAGGATAAGCTCGTGATCGGCACG AAAATGTTGTACAAGCGAAAAATCGGGCAGGACGGCAAGGTCGAGAAGTA CAAGTGTCGACTTGTCGCTCAAGGGTTCTGGCAGGTGGAAGGTGTGCACT ACACGGAAAAGTACCCGCCCACGCCATCAGCCGCGTCAATCCGGATGCTT TTGGCGACGGCAGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGCAGA GCAGGCGTTTTTGAAGGCGGATATTGACGAGGAGATATACATAGAGATCC CCGAAGAGTTCCAGAAGTTTCCGGGGGCAGTGGGACGACTTAATAAGGCC ATTTACGGACTCGTGCAGGCGGGGAGGTGCTGGAATAATAAGTTCTGTGA TGACATGACGGCGATTGGATTCGAGCAGGCAAAGGTGGACCCGTGCGTGT TCCGCAAGGTCGTTGACGGTGAGGCGGAGATGGTGGTGGTCGTGCACGTA GACGACATCCTTGCCCACGCCAAAGACCAAGCGACGATGAACAGGTTCGC GGCCGAGCTTGGGCGGAAGTTTAAGTTGAAGGACATGGGGGACGCTGAGT ACTACATGGGTTGTCACATTACCAGGAACCGCAAGGCGCGTGAATTAAAG TTCGACCAACACCTATATGTGGAGTCGATGGTAAAGAGATTCAATGTCAA GAAGGAAGCCAAAATACCGGCTGCGTCGGGGGTGCAGACGCTCTCAAAGG CGGATGAGCCGCAAAATCCAGAGAAGGAAGAGATGAAGATGTTCCCATAC CGAGAGGCAGTGGGGGCACTCATGTGGGCGGCGACGATGACACGGCCGGA TATCGCGTGCGCCGTACGTGCTGTAGCCAGGTTCTGCGAAAACCCTGGGC TGGCACACAAGAAGGCAGTGATGAAGATATTCCAGTATCTTCTTCACACG AAAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTACATGGA AGCATACACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGACGATCGG TTTCAGGTGCGGTGTTGATGTTGGCCAAGGGAGCGATCAGTTGGCACTCG AGGATGCAAGAAGTAACAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGC CTTATCGGAGGTAGTCAAGGATGTACTATTTTTGAGACAGGTGCAGGAAT TCATGGAACCGTCGATGAGGCTCGGTGCGGTAAATGTATTTGAAGATAAT GAGGGGGCCATCAAGCTGGCCACAAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:202415..203791+

>mRNA_A-nodosum_M_contig1015.20.1 ID=mRNA_A-nodosum_M_contig1015.20.1|Name=mRNA_A-nodosum_M_contig1015.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1347bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:202415..203791+ (Ascophyllum nodosum dioecious)
ATGGAATCGCATGAATGGGACGAATGGCGGAAGGCAGAAGAGACTGAGAT
GCTTGGAATGGTCGAGAACTGCGTTTATGATCAGGTGGCTCGGCCGAAGG
ATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAATCGGGCAG
GACGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTCTG
GCAGGTGGAAGGTGTGCACTACACGGAAAAGTACCCGCCCACGCCATCAG
CCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCAGCCAAGGATGGGGAG
CTGCGCCATTTCGACGCAGAGCAGGCGTTTTTGAAGGCGGATATTGACGA
GGAGATATACATAGAGATCCCCGAAGAGTTCCAGAAGTTTCCGGGGGCAG
TGGGACGACTTAATAAGGCCATTTACGGACTCGTGCAGGCGGGGAGGTGC
TGGAATAATAAGTTCTGTGATGACATGACGGCGATTGGATTCGAGCAGGC
AAAGGTGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGA
TGGTGGTGGTCGTGCACGTAGACGACATCCTTGCCCACGCCAAAGACCAA
GCGACGATGAACAGGTTCGCGGCCGAGCTTGGGCGGAAGTTTAAGTTGAA
GGACATGGGGGACGCTGAGTACTACATGGGTTGTCACATTACCAGGAACC
GCAAGGCGCGTGAATTAAAGTTCGACCAACACCTATATGTGGAGTCGATG
GTAAAGAGATTCAATGTCAAGAAGGAAGCCAAAATACCGGCTGCGTCGGG
GGTGCAGACGCTCTCAAAGGCGGATGAGCCGCAAAATCCAGAGAAGGAAG
AGATGAAGATGTTCCCATACCGAGAGGCAGTGGGGGCACTCATGTGGGCG
GCGACGATGACACGGCCGGATATCGCGTGCGCCGTACGTGCTGTAGCCAG
GTTCTGCGAAAACCCTGGGCTGGCACACAAGAAGGCAGTGATGAAGATAT
TCCAGTATCTTCTTCACACGAAAGAATGGGGGATTACGTACGGTGGACAG
GGCTGTGGACTCTACATGGAAGCATACACGGATTCGGATTTCGGAGCCTG
CCTGGACACAAGACGATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGG
GAGCGATCAGTTGGCACTCGAGGATGCAAGAAGTAACAGCAGCAGGTACC
TCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTCAAGGATGTACTATT
TTTGAGACAGGTGCAGGAATTCATGGAACCGTCGATGAGGCTCGGTGCGG
TAAATGTATTTGAAGATAATGAGGGGGCCATCAAGCTGGCCACAAAC
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