mRNA_A-nodosum_M_contig1015.20.1 (mRNA) Ascophyllum nodosum dioecious
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 305 bits (780), Expect = 5.670e-94 Identity = 180/468 (38.46%), Postives = 275/468 (58.76%), Query Frame = 1 Query: 10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 P+ +A H+ DEW+KA +E+ ++ N + V +P + IG + ++ K + G+V +YK RLVA+G+ Q G+ Y E Y P S+R +LA A+ E+ D + AFL +++EEIY+E+PE ++ V L +++YGL QA R WN + + GFE A DPCV+ + +GE E +V ++VDD+L ++ +A + A + KF++KD+G A + +G I + + R L Q Y ES++K+F + K P GVQ L+KADEPQ E K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TK+ GI Y G G EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+ALS+ VK+ +++R++ + + ++GA ++EDN+GA+ LA N Sbjct: 66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKN 529
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 291 bits (745), Expect = 1.160e-90 Identity = 157/375 (41.87%), Postives = 235/375 (62.67%), Query Frame = 1 Query: 256 EKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 E Y PT + +S+R+L A A ++ LRHFD +QAF+++D+DE++++ +PE + G + +LNK++YGL QA R W++ + +GF Q D CVFR + +G + +VVHVDDI + +++ ++F +L +K++GD +Y GC R+ A LK Q Y E + F V+ +IP G++ LS+ D+ EE+ +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P H +A + I Y++ T + GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+L++V+K+VLFLRQV FM P + + VFEDN+GAI+LA N Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 377
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 304 bits (778), Expect = 1.350e-90 Identity = 180/468 (38.46%), Postives = 277/468 (59.19%), Query Frame = 1 Query: 10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 P+ +A + DEW+KA +E+ ++ N + V +P + IG + ++ K + G+V +YK RLVA+G+ Q G+ Y E Y P SIR +L +A+ E+ D + AFL ++ EIY+E+PEE ++ V L +++YGL QA R WN ++ ++GFE A DPCV+ + +GE E +V ++VDD+L ++ A + A + KF++KDMG A + +G I + + R L Q Y ES++K+F + K P GVQ L+KADEPQ E K +MK+ PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TK+ GI Y G G +EAY+D+D+ D RRSVSG +LML + + W S Q+ A ++EAEY+ALS+ VK+ +++R++ + + ++GA ++EDN+GA+ LA N Sbjct: 397 PKTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKN 860
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 297 bits (761), Expect = 1.870e-90 Identity = 181/468 (38.68%), Postives = 276/468 (58.97%), Query Frame = 1 Query: 10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQKFPGAVGR------LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 P+ +A + DEW+KA +E+ ++ N + V +P + IG + ++ K + G+V +YK RLVA+G+ Q G+ Y E Y P SIR +LA +A+ E+ D + AFL ++EEIY+E+ E E + A G L +++YGL QA R WN + ++GFE A DPCV+ + +GE E +V ++VDD+L ++ +A + A + KF++KDMG A + +G I + + R L Q Y ES++K+F + K P GVQ L+KADEPQ E K +MK PYR VG+LM+ + TRPDI+ AV ++RF ENPG H A +K+ +YLL TK+ GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+ALS+ VK+ +++R++ + + ++GA ++EDN+GA+ LA N Sbjct: 131 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAMALAKN 594
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 293 bits (751), Expect = 2.600e-89 Identity = 177/468 (37.82%), Postives = 271/468 (57.91%), Query Frame = 1 Query: 10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---------EFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 P+ +A + DEW KA +E+ +V N + V +P + IG + ++ K + + +YK RLVA+G+ Q + Y E Y P SIR +L +A+ E+ D + AFL ++EEIY+E+PE E Q V L +++YGL A R WN+ + ++GFE A DPCV+ + +GE E +V ++VD++L ++ +A + A + KF++KD+G A + +G I N + R L Q Y ES++K F + K P GVQ L+KADEPQ E K +MK PYR VG+LM+ A TRPD++ AV ++RF ENPG H + +K +YLL TK+ GI Y GQ G ++EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+ALS+ VK+ +++R++ + + ++GA ++EDN+GA+ LA N Sbjct: 99 PKTYAEATTRQDQDEWMKAIASELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATEIYEDNQGAMALAKN 562
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 291 bits (745), Expect = 1.320e-88 Identity = 157/375 (41.87%), Postives = 235/375 (62.67%), Query Frame = 1 Query: 256 EKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 E Y PT + +S+R+L A A ++ LRHFD +QAF+++D+DE++++ +PE + G + +LNK++YGL QA R W++ + +GF Q D CVFR + +G + +VVHVDDI + +++ ++F +L +K++GD +Y GC R+ A LK Q Y E + F V+ +IP G++ LS+ D+ EE+ +P+RE +G+LMW AT TRPDIA AVRAVAR+C +P H +A + I Y++ T + GIT+ G GL ME + D+D+ + RRSVSG ++M G ISW SR Q+ T+EAEYV+L++V+K+VLFLRQV FM P + + VFEDN+GAI+LA N Sbjct: 184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQN 551
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 287 bits (735), Expect = 2.900e-88 Identity = 170/423 (40.19%), Postives = 250/423 (59.10%), Query Frame = 1 Query: 7 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFP--GAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKADEPQN-PEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1260 +P++ +AM+S + D+W +A E+EM M N V+ V K IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E + P SIR+LLA AA D E+ D + AFL ++ EE+Y+ PE F V +L ++IYGL QA R WN +F + + F + + +PCV++K+ G + + +V++VDDIL D +M L +F +KD+G+A Y +G I R+R R L Q +Y+++++KR+N++K + +P GV +LS+ + P+ E+E M PY AVGA+M+ T TRPD+A A+ +R+ NPG H K V I +YL TK+ + YG L ++ YTD+ F + D +S+SG V L GAISW S Q A T+EAEY+A SE Sbjct: 92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADSTTEAEYIAASE 510
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY) HSP 1 Score: 295 bits (756), Expect = 4.330e-88 Identity = 183/459 (39.87%), Postives = 264/459 (57.52%), Query Frame = 1 Query: 4 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKF--PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQ-VQEF-MEPSMRLGAVNVFEDNEGAI 1362 ++P ++AM + + W+KA E+EM M N V+ V +P+ IG K +YKRK+G GKVE YK RLVA+G+ Q G+ Y E + P SIR+LL+ AA D E+ D + AFL +I EEIY++ P F V +L K+IYGL QA R WN +F + + + GF Q +PCV++KV G ++++VDDIL D M+ L F +KD+G+A Y +G + R+RK R L Q Y++ ++ RF+++ K P GV E+E+M+ PY AVG+LM+A TRPDI AV V+R+ NPG H AV I +YL TK + + +G + L ++ YTDSDF + +D R+S+SG V L KGAISW S Q+ TA T EAEY+A SE K+ +++R+ +QE + PS+ + + DN GAI Sbjct: 313 NDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKV-SGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVHLSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKEAVWIRKFIQELGVVPSIE-SPITIHCDNNGAI 767
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 291 bits (746), Expect = 4.760e-88 Identity = 176/459 (38.34%), Postives = 258/459 (56.21%), Query Frame = 1 Query: 7 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVAR-PKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPEEFQKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAKIPAASGVQTLSKADEPQNPEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 EP + ++A +S + W A E G+V + + P VI + ++K K + GK+ K K RLVA+GF Q G+ Y + PT +AASIR+L+A A + EL H D EQAF++ +D +++++P G V RLNK++YGL QA R + + D+ IGFEQ+ DPCV R ++ E +V +HVDDIL +A ++ A LG K++G+ ++++GC R+R+A ++ Q Y+ S+++RFNV + + IPA+ V S E EE P+RE VG MW A+ TRPDI+ VRAVAR P L+H KA KI YLL T + + + Y D+DF + RRSVSGA++ +A + W SR Q+ A TSEAEY+A+ + VK+ LF + +F+ PS + + V EDNEGAI LA N Sbjct: 166 EPDSYQEARQSKHAEVWDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDIL-YAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVM------ENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADN 617
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA) HSP 1 Score: 296 bits (759), Expect = 5.220e-88 Identity = 181/468 (38.68%), Postives = 276/468 (58.97%), Query Frame = 1 Query: 10 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYPPTPSAASIRMLLATAAAKDGELRHFDAEQAFLKADIDEEIYIEIPE---EFQKFPGAVGR------LNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEMVVVVHVDDILAHAKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKADEPQNPE-KEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRLGAVNVFEDNEGAIKLATN 1377 P+ +A + DEW+KA +E+ ++ N + V +P + IG + ++ K + G+V +YK RLVA+G+ Q G++Y E Y P SIR +LA +A+ E+ D + AFL ++EEIY+E+ E E + A G L +++YGL QA R WN + ++GFE A DPCV+ + +GE E +V ++VDD+L ++ +A + A + KF++KDMG A + +G I N + R L Q Y ES++K+ + K P GVQ L+KADEPQ E K +MK PYR VG+LM+ + TRPDI+ AV ++RF ENPG H A +K+ +YLL TK+ GI Y G G +EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+ALS+ VK+ +++R++ + + ++GA ++EDN+GA+ LA N Sbjct: 375 PKTYAEATTRQDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKDRLVAKGYSQRHGINYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKN 838 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1015.20.1 >prot_A-nodosum_M_contig1015.20.1 ID=prot_A-nodosum_M_contig1015.20.1|Name=mRNA_A-nodosum_M_contig1015.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=449bp MESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQback to top mRNA from alignment at A-nodosum_M_contig1015:202415..203791+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1015.20.1 ID=mRNA_A-nodosum_M_contig1015.20.1|Name=mRNA_A-nodosum_M_contig1015.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1377bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:202415..203791+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:202415..203791+ >mRNA_A-nodosum_M_contig1015.20.1 ID=mRNA_A-nodosum_M_contig1015.20.1|Name=mRNA_A-nodosum_M_contig1015.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1347bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:202415..203791+ (Ascophyllum nodosum dioecious)back to top |