mRNA_A-nodosum_M_contig1015.17.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE) HSP 1 Score: 334 bits (857), Expect = 2.350e-112 Identity = 167/231 (72.29%), Postives = 195/231 (84.42%), Query Frame = 2 Query: 107 AAPLERTQAPRASASTAEAKTTQYTLDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 AAP + S STAE +T QY LDKK IGGPLTPI++ ILVKVRSKD S GGIILPEKA+ KPTEGVV++MGPG+THPETG+PV PCAVGDKVLYG++DGTAVDY+G DHQFVR QDILFVY+GERM+P TIKMIRDE+LVKVDPEAT +KSGLLLG KEE+TG G +TGEVVA GPGR++ G++VPM+V TGD +KFR FAGS V +QG+DYRVMK+ EVLAK+ Sbjct: 8 AAPARPPASSLVSMSTAETETAQYLLDKKAIGGPLTPIANYILVKVRSKDVASQGGIILPEKAQVKPTEGVVVSMGPGKTHPETGVPVDMPCAVGDKVLYGEFDGTAVDYVGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVDPEATTTKSGLLLGQKEENTGEGSTTGEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVDYRVMKVNEVLAKY 238
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA) HSP 1 Score: 239 bits (611), Expect = 2.530e-75 Identity = 122/220 (55.45%), Postives = 164/220 (74.55%), Query Frame = 2 Query: 152 TAEAKTTQYTLDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGID----YRVMKIEEVLAKW 799 TAEA T +++L KPIGGPL PIS+ ILV+V+ K ++ GG+ L EK+ ++PTEG V+A+GPG+ H ETG+ +P PC VGDKVLYGK+DGT ++Y G+DHQF+R D+LFVY+G+ M P+TIKM+ D+ILV+V+ + ++ SGL L + G P+ G+V+AVGPGRT G+ VPMT+Q GDLIKFRDFAGS + M GI YRVMK E+VL + Sbjct: 3 TAEAATAEHSLAGKPIGGPLMPISNAILVRVKDKAASTVGGVQLLEKSVDRPTEGTVVAVGPGKKHQETGVEIPMPCNVGDKVLYGKFDGTKLEYDGKDHQFIRDTDVLFVYSGDAMTPETIKMMGDQILVEVEDKEEKTSSGLFLAADDSGIGKKPTMGKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM-GIGLRTVYRVMKEEDVLVSY 221
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA) HSP 1 Score: 197 bits (500), Expect = 3.670e-58 Identity = 102/211 (48.34%), Postives = 139/211 (65.88%), Query Frame = 2 Query: 167 TTQYTLDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 T + LD + I GPL P+++ +LVKV+ +D S GGI+LP++AKEKPTEG V+A GPGR HPET + +P P G KVLYGK+DG +V Y G H +R DIL + G M D ++ +RD ILVKV +S G+LL T + P+ GEV+ VGPGR A TG+V + V+ GD +KF+DFAG+ +K+Q +Y VM +VLA+W Sbjct: 45 TRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSM--TKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 191 bits (484), Expect = 6.210e-56 Identity = 95/210 (45.24%), Postives = 141/210 (67.14%), Query Frame = 2 Query: 176 YTLDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGER-MQPDTIKMIRDEILVKVDPEATQSKSGLLLG-NKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 YTLD PIGGPL P+++ ILVK+ D + GG+ LP++AKEKP+ G+V+A G G+ HP+TG+ VP+P GD+VLYGK+DGT+V Y GEDHQ ++ DIL +AG+ M +K + D +LV+V ++ SG+ L E T + ++G VV G GR A G VP+ V+ G+ +KF+D+AG+ +++ G DY V+++ + LAKW Sbjct: 31 YTLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAAGVSEQTRT--TSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGEDYIVVRVPDCLAKW 238
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: K0T1C8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T1C8_THAOC) HSP 1 Score: 185 bits (469), Expect = 1.170e-53 Identity = 91/206 (44.17%), Postives = 139/206 (67.48%), Query Frame = 2 Query: 182 LDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 L+ + I G LTP ++ +LVK+ +D ++GGI+L AK K TEG VI+ GPG+TH E+G+ P P GD V+YGKYDGT V+Y G+ H +R DIL + G+++ DT +I D +LVKVD + ++ SGLL+ + G PSTG VV VGPGR A G+++ + + GD++K+RDFAG+ V ++G ++ V+++ ++LAK+ Sbjct: 38 LEGREIEGALTPTNNFVLVKIAPIEDETEGGILLTGSAKIKKTEGTVISAGPGKTHQESGLLFPMPVESGDGVVYGKYDGTEVEYDGDKHTLIRDDDILVKFKGDKLTLDTADVISDNVLVKVDDDGEETASGLLIAASAKKGGK-PSTGTVVKVGPGRMASNGEIMTVDIGVGDMVKYRDFAGNEVTIEGDEFSVVRMTDILAKF 242
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: D7FNY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY7_ECTSI) HSP 1 Score: 174 bits (442), Expect = 6.010e-51 Identity = 83/103 (80.58%), Postives = 94/103 (91.26%), Query Frame = 2 Query: 329 MGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEV 637 MGPG+THPETG+PV PCA+GDKVLYG++DGTAVDYMG DHQFVR QDILFVY+GERM+P TIKMIRDE+LVKVDPEAT +KSGLLLG KEE+TG G +TGEV Sbjct: 1 MGPGKTHPETGVPVDIPCALGDKVLYGEFDGTAVDYMGTDHQFVRDQDILFVYSGERMEPSTIKMIRDELLVKVDPEATTTKSGLLLGQKEENTGEGSTTGEV 103
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA) HSP 1 Score: 177 bits (449), Expect = 2.060e-50 Identity = 88/208 (42.31%), Postives = 132/208 (63.46%), Query Frame = 2 Query: 176 YTLDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 +TLD K I GPL P+S+ ILVK+R + GGI+LP+++ +KP+EG V+A GPGR+HP T +P A G +V+Y KY G V Y G DH + D+L VY GE+ +KMIRD++LVK+ ++ +G+++ + S G+VVAVGPGRTA G + P VQ G+ +KFR++AG + ++ Y V+++ + L+KW Sbjct: 54 HTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTDTGIVISAQTAGKEL-KSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLESESYAVVRMVDCLSKW 260
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO) HSP 1 Score: 174 bits (442), Expect = 1.240e-49 Identity = 87/206 (42.23%), Postives = 136/206 (66.02%), Query Frame = 2 Query: 182 LDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 LD + I G + P+++ ILVK D ++GGI+L KAK TEG V A+GPG+TH ++G+ V P VG+ V+YGK+DGT +D G+ H +R D+L + G+++ +++ ++ D +LV VD + ++ G+LL T STGEVV VGPG+ A G+++ M V GD+IKFRDFAG+ V+++G +Y V+K+ ++LAK+ Sbjct: 37 LDGRKIKGDVVPLNNFILVKKAPAQDKTEGGILLTGKAKIVKTEGTVQAVGPGKTHQDSGITVQMPVKVGESVVYGKFDGTEIDLDGQPHTLIRDDDVLVKFHGDQLTLESVNVVFDNVLVAVDSSESATEGGILLAKSSSQT-KRASTGEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS) HSP 1 Score: 173 bits (438), Expect = 4.770e-49 Identity = 89/206 (43.20%), Postives = 136/206 (66.02%), Query Frame = 2 Query: 182 LDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 L+ + I G LTP ++ +LVKV ++ + GGI+L AK K TEG VI+ GPG+TH E+G+ P P G+ V+YGKYDGT + Y G+ H +R DIL + G ++ D + ++ D +LVKV+ + + GLL+ + GS PSTGEVV VGPGR A G+++ + + GD +KFRDFAG+ V+++G +Y V+++ ++LAK+ Sbjct: 37 LEGREIDGVLTPTNNFVLVKVAEIEEETAGGILLTGSAKIKKTEGTVISTGPGKTHQESGILFPMPVTPGNGVVYGKYDGTEIVYDGDRHTLIRDDDILVKFDG-KLTLDNVDVVSDNVLVKVNDDQEATSGGLLIAATSK-KGSKPSTGEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEGEEYAVVRMTDILAKF 240
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA) HSP 1 Score: 172 bits (435), Expect = 1.190e-48 Identity = 91/230 (39.57%), Postives = 142/230 (61.74%), Query Frame = 2 Query: 110 APLERTQAPRASASTAEAKTTQYTLDKKPIGGPLTPISSNILVKVRSKDDTSDGGIILPEKAKEKPTEGVVIAMGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILFVYAGERMQPDTIKMIRDEILVKVDPEATQSKSGLLLGNKEEDTGSGPSTGEVVAVGPGRTADTGDVVPMTVQTGDLIKFRDFAGSPVKMQGIDYRVMKIEEVLAKW 799 AP RT PR A +A LD +PI L P+S+ +LVK+R + GGII+PE AK++P +G+ +A+GPGR HPETG +P G++V+YG+Y GT + Y EDH VR ++L Y G+ ++ DT++ + D++LV++ E Q+ SG++L E + S G ++ GPGR + G+ +PM V+ D IKFR++ G V ++G +Y V++ ++LAKW Sbjct: 10 APSARTP-PRGLAVSAAETDVPPNLDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQTASGIVL--SPEASKSRVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIEGTEYMVVRANDILAKW 236 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1015.17.1 >prot_A-nodosum_M_contig1015.17.1 ID=prot_A-nodosum_M_contig1015.17.1|Name=mRNA_A-nodosum_M_contig1015.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp MGPGRTHPETGMPVPSPCAVGDKVLYGKYDGTAVDYMGEDHQFVRGQDILback to top mRNA from alignment at A-nodosum_M_contig1015:125201..129487- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1015.17.1 ID=mRNA_A-nodosum_M_contig1015.17.1|Name=mRNA_A-nodosum_M_contig1015.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4287bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:125201..129487- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:125201..129487- >mRNA_A-nodosum_M_contig1015.17.1 ID=mRNA_A-nodosum_M_contig1015.17.1|Name=mRNA_A-nodosum_M_contig1015.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:125201..129487- (Ascophyllum nodosum dioecious)back to top |