Homology
BLAST of mRNA_A-nodosum_M_contig1015.14.1 vs. uniprot
Match:
D7FNX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX6_ECTSI)
HSP 1 Score: 159 bits (402), Expect = 9.810e-42
Identity = 119/285 (41.75%), Postives = 161/285 (56.49%), Query Frame = 3
Query: 48 EAVDYQARVVEITTLLRGRAPKLFPCNIAPRSCK-PYTSILGLCSTTRQRVDAKVFI-EKAKDAIAEQRRKKHEAGQGGDNGKDVDDQTM------NIVVVAEIDLTARKFRVTGAKFVDNIDATLHDLERVMELLLNSSENDLEPYVRRFASANELRSDTPAASTMQEVCSLSYALQVTASNLSGWTARAGSYDLPLARDVDMTTLLRELFDEPPTPSAPLEPAGET-----GKRGGARSRGQKKGKPTKARMXXXXGATEGXELRADEAKGARGPSKGSKRKK 863
E + Q RV+EI LL+ +AP L P ++ PR K +I+ LCST RQR DA+ F+ KA+ A + E G+G + G+ ++ + ++V+ E D+ R FR+T AK IDATL DL +M+L LN+ +LEPYV RFA+ANEL T AA + CSL+YALQV S+++GW GS+ LPLA DVDMT ++ ELF PPTP P P GK+GGA KK K A EG + +++ K A+ KGSKRKK
Sbjct: 9 EVDEVQDRVMEIAALLKKKAPHLAP-SVIPRPYKHAAANIVTLCSTPRQRADAEAFLASKAESATVDDVAAAGERGRG-EEGQQIESEDAAEGGRHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDLHLNAPRQELEPYVERFAAANELDPST-AALALHGACSLAYALQVATSSIAGWNGFVGSHPLPLAGDVDMTVVMNELFRPPPTP--PASPRSXXXXXTKGKKGGA-----KKKKAAAAGGESGAAGVEG--VVSEKGKTAK---KGSKRKK 278
BLAST of mRNA_A-nodosum_M_contig1015.14.1 vs. uniprot
Match:
A0A7S2SU08_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU08_9STRA)
HSP 1 Score: 68.2 bits (165), Expect = 1.130e-9
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 3
Query: 309 MNIVVVAEIDLTARKFRVTGAKFVDNIDATLHDLERVMELLLNSSENDLEPYVRRFASANELRSDTPAASTMQEVCSLSYALQVTASNLSGWTARAGSYDLPLARDVDMTTLLRELFD 662
+ V V +D T + V V + ATL +L+ +++L L+ S +LEPYV F N RS+ PA MQE +++Y+ QV N+ GW R G + +P+ +V + ++ EL +
Sbjct: 74 VGFVPVCRVDPTRGRVTVDKFLLVGEVQATLSNLDAMLQLQLHGSPAELEPYVTFFGDRN--RSEEPARD-MQEALNVAYSAQVVVDNMPGWATRIGEHKVPVPSNVPVRQVISELCE 188
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1015.14.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 9.81e-42 / Id = 41.75 Expect = 1.13e-9 / Id = 33.05 Sequence D7FNX6_ECTSI A0A7S2SU08_9STRA
Match Name E-value Identity Description
D7FNX6_ECTSI 9.810e-42 41.75 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more] A0A7S2SU08_9STRA 1.130e-9 33.05 Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 1413 Hectar predicted targeting category other localisation Exons 4 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-10_004730.1 Cds size 852
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866374.416157-UTR-A-nodosum_M_contig1015:97793..97813 1680866374.416157-UTR-A-nodosum_M_contig1015:97793..97813 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig1015 97794..97813 + 1680866374.4725528-UTR-A-nodosum_M_contig1015:104186..104727 1680866374.4725528-UTR-A-nodosum_M_contig1015:104186..104727 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig1015 104187..104727 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866374.427151-CDS-A-nodosum_M_contig1015:97813..98167 1680866374.427151-CDS-A-nodosum_M_contig1015:97813..98167 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig1015 97814..98167 + 1680866374.4366379-CDS-A-nodosum_M_contig1015:101872..101950 1680866374.4366379-CDS-A-nodosum_M_contig1015:101872..101950 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig1015 101873..101950 + 1680866374.4460897-CDS-A-nodosum_M_contig1015:103295..103411 1680866374.4460897-CDS-A-nodosum_M_contig1015:103295..103411 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig1015 103296..103411 + 1680866374.4576018-CDS-A-nodosum_M_contig1015:103882..104186 1680866374.4576018-CDS-A-nodosum_M_contig1015:103882..104186 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig1015 103883..104186 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1015.14.1
>prot_A-nodosum_M_contig1015.14.1 ID=prot_A-nodosum_M_contig1015.14.1|Name=mRNA_A-nodosum_M_contig1015.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=284bp
MGATTEGTTEAVDYQARVVEITTLLRGRAPKLFPCNIAPRSCKPYTSILG back to top mRNA from alignment at A-nodosum_M_contig1015:97794..104727+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1015.14.1 ID=mRNA_A-nodosum_M_contig1015.14.1|Name=mRNA_A-nodosum_M_contig1015.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6934bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:97794..104727+ (Ascophyllum nodosum dioecious)CGAAACAAACCTCAAGGATC ATGGGGGCAACGACGGAAGGCACGACGGAA
GCTGTGGACTACCAGGCTCGTGTGGTTGAAATCACGACTCTTTTGAGAGG
TCGAGCGCCCAAACTTTTCCCTTGCAACATCGCCCCTAGATCCTGTAAGC
CCTACACCAGCATCCTTGGCTTGTGCTCGACGACGAGGCAACGTGTGGAC
GCCAAAGTCTTCATCGAGAAGGCTAAGGATGCTATAGCAGAGCAACGACG
GAAGAAGCATGAAGCGGGGCAAGGGGGCGACAATGGAAAAGACGTAGACG
ATCAAACGATGAATATTGTCGTTGTGGCCGAGATTGACCTGACGGCACGG
AAATTCCGGGTGACGGGCGCAAAG GTGGGCCCGCATGGACTCCGACGGCG
TGACGCCGCTGTGCGTGCCAGGGGTACCGTACCAACTGTCTCTCTGTTTG
GTTGGTCGGTCGCGACGTAGGGCGCTTCACAGATTCGTTGCGTGTACCGC
ATCGTGGGGAATTTGGACGGCAAACAAATGCAGCATACAGGAGACTACTT
CATCAACGAATTACAGCAGATTACCCTACTTACCGGTACCGCTACATCAA
AGTAGTTGTTCGCTACTATTAAATGTATACCATGTGTGTGTGTTTTCTTC
CCATCCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTCACAC
AGGAGGAAGGTCACACAGGATTTTTAATCCACCTTCCTTCTGCGGTGCAT
GCACTACGTGGTATACAAGTAACTAACTGCTTATAGTTTGTATCCTGGCT
GTACTTGTACGGTACCAAACCTACAAGTCAGGACGTATACTGCTGTTTCT
ACAAAAATCCGAACGCATCTAAACCTTCCGAGCATCTTAACCGTCCGGGG
TGATTATATCGAAACGTCGTAGGGTCGGTCTAAGACAATACTGTACTGTA
TCAGGTCGCCCTGGTGGTTCAGTTGGTAACCTCGAAATCTTCTGACGTTG
GGACGTGAGTTCGAATCTCCGCGCAGTCACACGAATTGGGATTTTTCCTC
ACGAAAAAAAAATATATATATATGCCCAACAAGTGGAGAACGATTAGCTC
TAAATCGTTAGTACAATAAATTCGACTTCACGGTCGACGAGGGAAAGGAA
TGGCTGAATCCTTCTCGCCATAGAAAATTAAGGCAAGCACTGCAGAAGGA
AGGTGGAGAAATCCTGTGTGACCTTCCTCCTGTGTGACTCCGGTTGGTAC
GTCCACAAACCTGACGTCCAGAATAAATGGGATGACAACACACGCACACG
TGGGCTGAAAATTCATAGCCGCTAAAAAAAGAAATCGCCATTTTTCGGCG
GCCATTTCCCACGAGGCCTTTGTGGGTGAGAAATAACAATTTTTCACCAG
CCCGGTTTTCACCGGCCGGTCGAGGTCGCTCGCCCGCTGAATAATGACCG
TCCATGTTTCTGCAATGCCCAATCTGGAATCGGACGCTGAAAAGGGGTTT
GTATAACTAGCGAGGCATTCACAAAGGCACCTATACAGTAGGCTGCTGAA
TGCACCTGGTACTCTCTGATCCAGGGTGGCACGCGATGTTGTTGCTTGCA
GGCAATGCTTCTGCGGAGTGCCACAGTGTCACCCTCATCTTCTGCCATGA
CTGGCGAGCTTGATAATGAGAAGCTATTAAGCAATAATAGCCCCATGAAT
AGTAGGAGTAGGGGACGGTTTACTCTATAATAGCCAGCAAACAACACCCG
AACGAGGAGTATGAGAGAGAGAGGAGAGAGAGATAACCACGAGAGAGAGC
TACCGCGACCATTATTAGGCAGCCACCGGCCCGCGCGCGAGATTTCTTCG
TGATGTGGAATGTTCTATTAACTACTCTAGACAAAGCATGTGATGTGGAA
TGTTCCGTGCTGAAGCGCTGCAGCTATCACTACGTAACCAGGCCTTCCGA
GAGTCGAAGTGTCTGTTTTTGCTTTTCATCCTGTAGTGACTTGTCTGTAA
AATCACTTGGAAATAGAGCGGGCCCAACATGTCGATATAATAGTATGTAC
AAGCCAGAGTACCCTCACGAACAATAACACTAGTTTAACCGCAGTTTGGT
TGCGTTCCACCCCGTTCGGTGGACGTGAGAGATGATGGACCATCATAGAC
CAGACATGGCTCCACAAGAATAAAATCAAGCGCCCTTCAACAACAGTACA
TACTATTAGTAGTGTGCGCTAAGATTAAGACACCACCATAGGGTACAGTA
CAGTACAGTACTGTGTCGAATGCTCTGATTTTCGGATGTTGGCAGGATCT
CCTTCGTAGAATAAACGACTCAGTCGGCGCCACAGCTTGCCTATGCCGGT
ACATTCAACATGCCGACTTCATCCCAATAGTGGGTGTGGGAAAGAGAGGC
GCATTTTAATTGGTCCGTGGTGACCCGCTAAGGCAGCACCCGTTTGGAAC
TACCTTGAGGCTTACTGGCCCTGCGACGGCGGACTCTCGGCAGTGAACGC
CATCGGTACGCGATTGCGTAGTGAACCGATAAACTCGGGACTGACCCGAT
GGCGTATGGCGGTTTAAATAAATGGACGCCGCCGCGGAACTCGGGAGGGA
TCCCGTAAGTAAGCACCCGATTCAGCCTGAGTAAGGAGATGTGCAGGTTG
ACGCGGGACGGGACTGCCGAACACATCTCGCGAGACCAAATTCTCAGACG
CGAACGAGCAGGATTGGCAACCTTACCCGGTTGATCCTTGCTCTTGTTAA
ATGTGATGACCATAAAGAGCAAAATCAATTTTGAGTCGACGATACAGAGA
GATTTTCTGCCGTCCCGAAAATCGCGCGCCTGGTTGGCAATTTCAACTTG
CAGCGACTCCATTTTTTAGGCCCGTCCTCCGAACAAAGAAATCACCTTCA
AACTTTTCCAAACTCCAAAAAAATGCCTCCGCGGAAACCCCTAGCACCCG
ACTCTCGCTACCTTCTCACCGGTACATGTTGCTAATAGTAAGGGCAATGA
CACCTACCATTACTAATAATATCGGTGTCTACTGTAATCATTTGATAACT
TGAAAAATCGAAATTCAAACTCTCATCTTTACGGGTACGATTACTTGTAC
TATAATACTATTAAATATCCCTTAGAGGTTCATCCTCTTCAGTTTGGGAA
AATTCGGAATATCGACCGTTTCAAGTTTTTTCGCTGTTTGCCCCATGCTC
AAGGTTTGGAAAAGTTTGGAACATGTATACGCCTCCCCTTCTGTGTCCCC
CTTGGAACACCTCGTCTAATACTATGCTCCACCCCCACGAGGGCCTGCGC
TAGTACTGTTATCAATAGGCGACCACACGCTTTGCCGCTGTCCGAGACTC
GCTGCAAGCTTGTCTCGTTGCCTTTCTAGAACTATGCCCGAAGGTTTGGC
ATCAACGGCGAGCTCCACAGCATACGCTATCCTAAGCCTGAACCAGCGTG
TGTGGTGTGGGGGGGTCGATCAGCTTTTCTCGAGCTTGTTGTGGTATTAT
AGCCCTCCATGACATGACATGAGCGGATTGACACCACGCCAGCCGTAGTC
TAGTCTACTATGCCGTGGCCTGAAGGTGGTGGAGCCCATGTCAGGCACAC
GGAGACCGTCGGACAAGGGGCTAGCCGGTATCTATCTGAGGTCTAGAGTC
GCTACTATCGGGGACCGTGGCGGAATAAACTGTTTTGGAAGTATTGTAAT
ACTACTACTTCGTATTATACTGTTAATAGTGCGTATTTTCTTCATTCTAT
TTTTTTCATTCCTCTCATTTTTGGCCACAGTTTTTTCATAATGCCTTCGG
GCACAAGGAAACCAAAATCCCTTTTAAAGCCCGCAAGAAACGCGCGCCAT
AAAAAGACACAGAGTGACCCCATCTGGTAGGCTTCGCTTGCGGTTGATCA
GTGGAGCGCCGAAGGCATTATAGTGTCTCGCTTGAAAAAGTCGTACTGTA
CCAAGAAAATGCAAATCCCGGCTACAAAATGTATAAACGCGCCACCAAAA
AACTGACCAAGCTCTCCCCTTCGCCCGATGCTCGCTGCGTGTTGTCATTC
TCCATTGCACATGGCACATGGTATCGCAGTTCGTTGATAACATCGACGCG
ACGCTACACGACCTCGAGCGCGTGATGGAGTTGCTTCTCAACTCAAGCGA
AAATGAT GTGAGACGGCGTCTGTTCCCAAGCTCTTGTATATCTATCTATA
TATGTATATATATATATATATATAATATGGTGATGATGGGGAAGGGGAAA
TGTAGTGCTTCGTTTCTACAGCAAACAGTGTATCATAAGTCATGTCTGTA
ATCTGTAACCAAGCAGCCGAGGGATGCTAGAGGTTTCCTCTGCGGTTATC
ACTCCGCACCGCTGTATCGTGCTGATATTAAGACATTGATGTTAACACAT
TGATATGAGTACATCAATATGAATACATCCTATTAATACATTAATATTAA
TACATCAATATGAATACATCCTATTAATACATTAACGTTAATACATTGAT
ATTAATACATCAATATGAATACATCCTATTAAAACATTAATATTAATACA
TCAATATGAATACATCAATATCCGAGTATTTTTGTACCATTGCAGTTTTC
TGTTTGTATGGAGAGTACGTTTGTTTGTTTTTCCCTTCCGGATGGTGTTT
ACGTTTTTCTGTCTTGTCACCACGGGCTGGATCTTTGACATCGTCGTAAT
ATGCTTATCCGAGAACTCAATCAACCAATCAAATCAATCAATCAATGTAT
CGCATGAAAGGGGTTTGCTCTTAAAGAGTTGATGGTATGGGGTGAGCCCG
GTAATGTTGCTCCGGCAGATCTGTTAACATGAACCTCAGCGGAAATATAT
AATAAATAATAGTAATAATTCATTACGCTGTAGTGTAGCTTGGACCTATT
AATAGAAGGACTTTGAGAATACAGCTGATACAATACTCTATATTGTATAT
TCAATATAATACAGTGTGGCAACAGCCGTGCAAGCTGTTACCTGTTACCT
GTTACGGTCGATCTCCAGGCTATTATTTTTTTGTTTGTTATTATTAGCTT
ATTTTGTATGTTATGTATGTATGTATGTTTTTGTGTGTCTACATGCTTGG
TGGATCTTGGATTTTGTGATACAGATATATTTTGTTCCTTTTCGTTTTTT
TTAATGTATATATACGTAATATGGACATCGAGTGAGTAGTCTGGCAACAC
CACGAACCGGGGATTCGCAACCGCGTGCATAGTTCATGAGACAATATAAT
ATAATGTAATATAATATAATATAATATAATATAATATAATATAATATAAT
ATAATATAATAAGAAGTATAATATTATAGTATTATATAATACAACGAGAC
AAAGAGACAAAGAGCGGGTCTGGTCTGGGGCCCAACTATTAATATAATAT
AATAGCAGCTATTGGGACGACCAAACCCCTCACGTCGATTCTTTTCTACT
CTTATCTTCACTGCGCGGCGTTGATGCACCACGTCGAACCAACCGCGGGC
AGTTGGAGCCCTACGTGAGGCGATTCGCGTCGGCGAACGAGCTACGATCC
GACACGCCAGCTGCCTCCACCATGCAAGAGGTGTGCAGCCTCTCGTACGC
TCTGCAGGTCACGGCAAG GTGAAATACAACTGATACAATACTATGTTATA
ATACTATACATACTATACTATAAAATAATAGTGTAGTGATAGATGCAATG
TGATGTGTATCCTACTCCTGACGGAAGGATTATGATGCTTCGAGCGGCCA
GGACGTGTCCGAGGATTCCGGAATAAAGCGGTAGTCTATACGATGGACGT
CCTGTTTTCCGCTTGCTTTCGTAAGATATGTTTCTCTTTATATATATATT
CTTGCCCGGGGATGGTTCCACGTAACACCCGCGATGCTCTTGGCCCTACT
ACTTGCACTTGACCCACCTGTATCTATATCTATATCTATGACCACGCGTA
GCGAAGCTTCGAGGGGATCATCCTCTACCCCTCACCGCCTCCCAAGACAT
CGAGAACCTCTTCGCCTCTCCCTCTTTTCCTTTCTCCAAAATCCGTTTTT
GCGACGTTATTCAATCCGCCAACGCGGGGATCTCGGCAGCAACTTGTCGG
GGTGGACAGCGCGTGCCGGGTCCTACGATCTCCCGCTCGCGAGAGACGTG
GACATGACAACACTGTTGAGAGAGCTGTTCGACGAACCGCCTACACCCTC
CGCACCGTTAGAGCCGGCCGGCGAGACGGGCAAGAGGGGCGGAGCGCGCA
GCAGGGGCCAAAAAAAGGGGAAGCCAACAAAGGCGAGGATGGCGAAAGAA
GCAGGAGCCACCGAAGGCACAGAGTTGCGGGCGGATGAGGCAAAGGGTGC
CCGAGGACCTTCTAAGGGGTCGAAGCGGAAGAAACGACCGTGA GATAATT
TCACGGTGTCAAAAATCAAACTCCGCCGGGTTCCCGAAGATGCCATGGGC
TCGGGCATTTATTTATTCTTGTGCAGTATGAGTAACGCGCGACCGGGATC
GACAAGGCTGAAGAGTTTTGATGGCGGTGGCGGAGGACCAGAACTCGTCT
CCGTCGGGGCTTCGATCGACGGTTTGCCAAAGCATACCAAGCGGCCGTGT
CTTCCAGCCCGCATGGGAAGATCCGCCCGCGCACTACGGGTTCCACTTAA
GGAAATGACGATCCCAGACCAAACGACGACGCGTGTGTCAATTAGTTGAG
CCCCGTTCCTTGGTGCATTAGGAGGTTGGCGATGCCTTCGATCGAGTTCT
CGTTGCGCTGCGCTTCTGAGCGCCGACACGGAGCAGCGTACTGTACCGTA
CAACACCGCGCAAAGGTAAAGGTAGATGGCGAAGAGGCCCTCAGACATCC
TATCGCCTATCGGATCCTATCGGAGGAAGAGTCGACTGATTTCCTTCCCA
TTCACTGGATTGACTATCAACCAAAGAACCGTAC back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1015:97794..104727+
>mRNA_A-nodosum_M_contig1015.14.1 ID=mRNA_A-nodosum_M_contig1015.14.1|Name=mRNA_A-nodosum_M_contig1015.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at A-nodosum_M_contig1015:97794..104727+ (Ascophyllum nodosum dioecious) back to top