mRNA_A-nodosum_M_contig10131.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: D8LPY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI) HSP 1 Score: 134 bits (337), Expect = 4.320e-34 Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 1 Query: 16 LPSMDQQRRPKRWLRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVF-QTGSAAADLGW-GHEVRVEVWDKDCVSADDFIGEVSLSIREDQQG 354 L +RP RWLRLLL + L+RGLD+S TSDP+C VY+DRVW ++ VCW TL PRW +E EVF + G+ A LG GHE+RVEVWDKD V A+DFIGEV L +RE Q G Sbjct: 3833 LKEQTTSQRPTRWLRLLLQGARLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQRIEIEVFGREGALAQGLGLVGHEIRVEVWDKDVVGANDFIGEVHLFLRECQDG 3947
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A6H5KLV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV8_9PHAE) HSP 1 Score: 133 bits (335), Expect = 8.010e-34 Identity = 66/107 (61.68%), Postives = 77/107 (71.96%), Query Frame = 1 Query: 40 RPKRWLRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAAAD-LGW-GHEVRVEVWDKDCVSADDFIGEVSLSIREDQQG 354 RP RWLRLLL + L+RGLD+S TSDP+C VY+DRVW ++ VCW TL PRW +E EVF G A A LG GHE+RVEVWDKD V A+DFIGEV L +RE G Sbjct: 4033 RPTRWLRLLLQGAQLRRGLDVSGTSDPFCTVYVDRVWFAETRVCWGTLAPRWDQQIEIEVFGRGGAPAQGLGLVGHEIRVEVWDKDVVGANDFIGEVHLFLRERHDG 4139
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A7S0XQR3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQR3_HEMAN) HSP 1 Score: 53.9 bits (128), Expect = 5.740e-6 Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1 Query: 88 RGLDLSETSDPYCVVYIDRVWH----DDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEVSLSI 336 R DL+ SDP+ +++R ++ V W T+ P W EFE+ DL G +R+EVWDKD + +DDF+GE+ + + Sbjct: 21 RAADLTGKSDPFVRAFVERAGELLVTMETSVRWETVNPLWEE--EFELSDD-----DLEQGTTMRLEVWDKDKIGSDDFLGEIVVDM 100
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A7S1HL30_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HL30_HEMAN) HSP 1 Score: 53.9 bits (128), Expect = 6.070e-6 Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1 Query: 88 RGLDLSETSDPYCVVYIDRVWH----DDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEVSLSI 336 R DL+ SDP+ +++R ++ V W T+ P W EFE+ DL G +R+EVWDKD + +DDF+GE+ + + Sbjct: 198 RAADLTGKSDPFVRAFVERAGELLVTMETSVRWETVNPLWEE--EFELSDD-----DLEQGTTMRLEVWDKDKIGSDDFLGEIVVDM 277
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A5B8MQL6_9CHLO (C2 domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MQL6_9CHLO) HSP 1 Score: 52.8 bits (125), Expect = 1.630e-5 Identity = 29/88 (32.95%), Postives = 48/88 (54.55%), Query Frame = 1 Query: 91 GLDLSETSDPYCVVYI--DRVWH--DDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEVSLSIRE 342 +D++ TSDPYC VY+ D ++ + S V TL P+W+ E+ + A+ + +EVWD D S DDF+G+V + + + Sbjct: 678 AMDITNTSDPYCTVYVKGDALYRKKEKSSVKSSTLNPKWN-----ELLKVWPVDAESDAELTLVIEVWDHDTTSGDDFMGKVEVKLND 760
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A7S4U7B8_9EUKA (Hypothetical protein n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4U7B8_9EUKA) HSP 1 Score: 52.4 bits (124), Expect = 2.000e-5 Identity = 30/86 (34.88%), Postives = 48/86 (55.81%), Query Frame = 1 Query: 79 YLQRGLDL----SETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWGHEVRVEVWDKDCVSADDFIGEV 324 Y+++G DL S++SDPY I + V +TL P+W+ F++ +D W +++EVWDKD +S+DDF+G V Sbjct: 75 YIEKGTDLIIKDSKSSDPYVKFTITGQQEQKTRVIKKTLNPQWNEAFTFQM-------SDY-WEKSIKLEVWDKDKISSDDFMGVV 152
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: UPI000A2A85A7 (uncharacterized protein LOC110238220 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A85A7) HSP 1 Score: 52.4 bits (124), Expect = 2.190e-5 Identity = 31/98 (31.63%), Postives = 50/98 (51.02%), Query Frame = 1 Query: 55 LRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAA-ADLGWG---HEVRVEVWDKDCVSADDFIGEVSLSI 336 L + ++E +D + SDPYCV+ + ++V + TL P W +FE+ D +G H + V+VWDKD ++ DDF+G V + I Sbjct: 44 LTITVIEGRNLSVMDPNGKSDPYCVIVVGDQ-QQSTNVQYSTLNPEWRETFKFELSAIPQIKDTDENYGCLIHYINVDVWDKDTLNRDDFMGRVVIPI 140
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Match: A0A6P8IWY2_ACTTE (Phosphatidylinositol-3-phosphate phosphatase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IWY2_ACTTE) HSP 1 Score: 52.4 bits (124), Expect = 2.190e-5 Identity = 30/98 (30.61%), Postives = 49/98 (50.00%), Query Frame = 1 Query: 55 LRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDSHVCWRTLTPRWSHWVEFEVFQTGSAAADLGWG----HEVRVEVWDKDCVSADDFIGEVSLSI 336 L + +VE +D + SDPYC+V + + V + T+ P W +FEV + D +G H +++WDKD ++ DDF+G V + I Sbjct: 44 LTITVVEGRQLPVMDPNGKSDPYCIVSVGGQ-EQTTAVQYATVNPEWRETFQFEVPAIPQSDTDDNYGSCLIHYATIDIWDKDTLNRDDFMGRVMVPI 140 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10131.1.1 >prot_A-nodosum_M_contig10131.1.1 ID=prot_A-nodosum_M_contig10131.1.1|Name=mRNA_A-nodosum_M_contig10131.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp MPLPSMDQQRRPKRWLRLLLVESYLQRGLDLSETSDPYCVVYIDRVWHDDback to top mRNA from alignment at A-nodosum_M_contig10131:671..1027- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10131.1.1 ID=mRNA_A-nodosum_M_contig10131.1.1|Name=mRNA_A-nodosum_M_contig10131.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig10131:671..1027- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10131:671..1027- >mRNA_A-nodosum_M_contig10131.1.1 ID=mRNA_A-nodosum_M_contig10131.1.1|Name=mRNA_A-nodosum_M_contig10131.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig10131:671..1027- (Ascophyllum nodosum dioecious)back to top |