mRNA_A-nodosum_M_contig1012.7.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI) HSP 1 Score: 428 bits (1100), Expect = 2.790e-144 Identity = 224/360 (62.22%), Postives = 262/360 (72.78%), Query Frame = 1 Query: 112 MVTRYPLCIVCVAILALGLRSASARTLTRLMVARSLPRDDKHDSAVIARGRISGVGEQPTAFQLGRRRKTFPGEIWRVYRGAWGLKTVVKQVRDLRGGAVPSDASDEIFDSLSDEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYGQEI 1191 MV R+P C+ V +LALGL + R RL+ S + + + ++ A +LG R++F +GAWGL TV LRGGA D DF EASF RLKQDW KTP+ITR +FQVS+ I + A LN+NQWP+FLLLDWRP + KLQLWRL TPFL LGPLG+NF LT HF+WTYMS LEKLHYREPHTFVMLL FGMSSL+LLTL+TGGDVN+SYTLGHS++CF+V +WSRKFAGT+VN+LDMFELPTELLPYFFVAQTLMMEGVIPWVDLSG+LIGYAWQTLSLKGLL+APKPLVNLFRNNA+LRAEYA+AGKEYGQ++ Sbjct: 1 MVLRHPACLGSVVLLALGLTPTAGRVSPRLLALGSSFSGRHENGKQRQQPEQESLQQRAAALRLGGDRQSFLAHSGNGRKGAWGL-TVAS---GLRGGADDEDXXXXXXXXX---------XXXXXDFGEASFVDRLKQDWKKTPVITRAYFQVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDV 347
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA) HSP 1 Score: 201 bits (511), Expect = 7.330e-58 Identity = 101/235 (42.98%), Postives = 152/235 (64.68%), Query Frame = 1 Query: 478 VDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYG 1182 +DE DF S R+K W KTP I++ + S+ I + NQWP LL+DW L KLQ+WRLVT FL+ G G++++LT HF WTY+ QLEKLH+R+P F ++L FGM+ L + L+ ++ + LGH+LSCF+V +W++K+ G VNV+D+F + ELLP+FFVAQTL++ G +P D+ G+ G+ + L+LK + AP+ L +F ++ ++ Y R +EYG Sbjct: 102 IDEADFKGESILVRMKTAWKKTPPISKIYVLSSMSITIGAWAFKNNQWPQLLLMDWDKVLKKLQVWRLVTSFLYFGNFGLDYILTLHFVWTYLGQLEKLHFRKPADFFVMLAFGMTVLHISLLILKNYLSPN-VLGHNLSCFLVYIWAKKYEGNDVNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK) HSP 1 Score: 193 bits (490), Expect = 9.760e-55 Identity = 107/271 (39.48%), Postives = 159/271 (58.67%), Query Frame = 1 Query: 394 LRGGAVPSDASDEIFDSLSDEDEDDLELVD--------EEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYG 1182 +RGGA S+ F+ + DD E D E+ F EA+ +R+ W K+ +T+ F +S+ I V C N+NQWP+ L LDW+ Q WR +TPF GPLGVN++LT F WTYM+ LEK+ +EPH F ++ V G ++L+ L G D LGH+L+CF+V VWSR G V + D FE+ L+P+FF Q ++MEG+IP+ D+ G+LIG+A+ L K LL AP + ++F++ L+++Y +E+G Sbjct: 60 IRGGADSESDSESDFEYDDGDLSDDEEYFDGAVGDEGNEDSFKEATLVQRIMISWNKSAPLTKAFISLSVFITVVCQITNKNQWPAALQLDWKKATAGFQFWRFLTPFFHFGPLGVNYILTAQFVWTYMNDLEKIGCKEPHDFAIMCVIGGAALIALYGAMGWDPAG---LGHNLACFLVYVWSRVHEGQSVLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: W7TX70_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX70_9STRA) HSP 1 Score: 186 bits (471), Expect = 5.680e-51 Identity = 90/212 (42.45%), Postives = 140/212 (66.04%), Query Frame = 1 Query: 472 ELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAP 1107 E V EEDF++ SFA +LK+++ +TP +T+ + S+ + N+NQWP +LLLDW + +LQ+WR T FL+ G G N++L+ HF WTYM+ LEKL + P FV +++FG+S L++ + L G + LGH+LSC++V VWSR F G V+V+ +F LP +LP+FFVAQT+++E +P DL G+ +G+ + S + L++ P Sbjct: 193 EGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQ---PHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP 401
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN) HSP 1 Score: 181 bits (458), Expect = 3.310e-50 Identity = 93/227 (40.97%), Postives = 142/227 (62.56%), Query Frame = 1 Query: 505 SFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLN-QNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYG 1182 +F R + W +TP +T+ + S+ + C +FL NQWP +L L+W + Q+WR +T FLF GP G++++LT HF WTYM LEKL + EP F++++ FG SL+L L G ++ LGH+LSCF+V +W+R + G +V+V++ F + ELLP+FF AQT ++E +P DL G+ IG+ + + +L APKPL +LF +N L A Y +E+G Sbjct: 97 TFKSRTLKSWAETPPMTQAYVGASLALT-CGSFLAFNNQWPEWLHLNWGAVFKRAQVWRPLTAFLFYGPFGLSYLLTIHFVWTYMGTLEKLSHTEPWEFLVMMAFGAGSLLLGVGLGGMK---THFLGHNLSCFLVYIWARTYEGQEVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7S1ZIK9_9STRA (Derlin n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK9_9STRA) HSP 1 Score: 176 bits (446), Expect = 2.110e-48 Identity = 103/283 (36.40%), Postives = 166/283 (58.66%), Query Frame = 1 Query: 394 LRGGAV-PSDASDEIFDS-LSDED-------EDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYT--------LGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYGQEI 1191 +RGGA+ SD S+ FDS SD+D E+D E+ E+DF+E + R + + KTP T+ + S + ++N +P L L+W+PTL +LQLWR +T FL GPLG+ +++T HF WTYM+ LE+L++ P+ F ++++FG +S+V A Y+ LGH+LS F+V VWSR G +VN+ ++F E+LP+FF+AQT ++EG +P +DL G++ G+ + +LR P L+N + ++ Y+ A +E ++I Sbjct: 48 IRGGAILDSDDSEYDFDSDFSDDDDAFFDLNEEDFEISAEDDFNEDTSLSRFMEAFAKTPPFTKAYMTASFIATSVGYLTSKNDFPPLLQLNWKPTLTRLQLWRPITAFLNFGPLGLGYIMTCHFVWTYMATLERLNHAAPYDFWVMILFGCASMV-----------AGYSCLGLSPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDLLGIVFGHIYHHYKTTHVLRTPTFLINWYNSDGV----YSTAVREKYKKI 315
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA) HSP 1 Score: 172 bits (436), Expect = 2.590e-47 Identity = 94/246 (38.21%), Postives = 150/246 (60.98%), Query Frame = 1 Query: 451 DEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYLRAEYARAGKEYGQE 1188 DED++ E + +EDF+E + R+ Q W +TP +T+ FF VS + N+N WP L L+W +L+ Q+WR+ F G LG+N +++ +F WTYM +LE+++++ P F ML+ FG L++ T L G ++ + LGHS R++ G +VNV DMF L ELLP+FFVAQTL++EG +P +DL G+ +GY + L ++ L++AP+ + F+ A + +Y R +E+G E Sbjct: 25 DEDDEFDEDIADEDFEEGAVGNRIGQLWARTPYLTKRFFYVSFALTAYAFVFNKNAWPKLLDLEW-DKVLRGQIWRVAATFFCFGALGMNCIISMYFVWTYMGELERMYFKRPQDFAMLMGFGALCLLVFTSLMG--IHGQF-LGHS----------REYEGVEVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFGVE 255
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7S1ZWZ3_TRICV (Derlin n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWZ3_TRICV) HSP 1 Score: 174 bits (441), Expect = 3.240e-47 Identity = 97/268 (36.19%), Postives = 151/268 (56.34%), Query Frame = 1 Query: 397 RGGAVPSDAS-------------DEIFDSLSDEDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVNASYT--------LGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNN 1137 RGGA+ SD D++F +D D+ ++ E+DF E +R W KTP T+ + S+ + LN+N++P LLLDW+P L ++QLWR +T FL +GP G+ + +T HF WTYMS LE+L++ P+ F ++++FG ++V A YT LGH+LS F+V VWSR G +VN+ ++F E LP+FF+AQT ++EG +P +DL G+ G+ + G++RAP+ LV + + Sbjct: 91 RGGALDSDYDXXXXXXXXXXXXXDDLFFDGADVDD----VIGEDDFGEDGTLERASAAWAKTPPFTKMYLSASVAATLWGYLLNKNEFPGVLLLDWKPILTRMQLWRPLTAFLNVGPFGLGYAMTGHFVWTYMSTLERLNHDRPYDFWIMILFGCVTMV-----------AGYTFLNISPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFVTRAETLPWFFLAQTFLLEGELPVLDLLGIFFGHIYHHCKTSGIIRAPRALVEWYEKS 343
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: B7G004_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G004_PHATC) HSP 1 Score: 172 bits (436), Expect = 9.660e-47 Identity = 91/248 (36.69%), Postives = 150/248 (60.48%), Query Frame = 1 Query: 454 EDEDDLELVDEEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVLLTLLTGGDVN--ASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAYL----RAEYARAGKEY 1179 +D DD ++ E +F E + R+ W KTP +T+ + S + N+N++P+ LLLDW+P L KLQ+WRL+T FL GPLG+ +++T HF WTYM+ LE+L++ P+ F +++ FG S+V+ G + + LGH+LS F+V +WSR G +VN+ ++F E+LP+FF+AQT ++EG +P +D G++ G+ + G+LRAP +V + ++ L R+EY ++ Sbjct: 96 DDADDFDMA-ESEFAEDNTVDRMIDAWRKTPPLTKGYLSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQLSMVV-----GYPIFKLSPRFLGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAPDVVVEWYNGDSSLARRIRSEYKPISSDF 337
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Match: A0A7R9VZL8_9STRA (Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL8_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.120e-44 Identity = 84/220 (38.18%), Postives = 138/220 (62.73%), Query Frame = 1 Query: 484 EEDFDEASFAKRLKQDWVKTPIITRTFFQVSIVIAVCCAFLNQNQWPSFLLLDWRPTLLKLQLWRLVTPFLFLGPLGVNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLVFGMSSLVL-LTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNA 1140 E+DF E +R W KTP T+ + S+ +N+NQ+P F LL+W+P L +LQ+WR T FL GP G+ +++T HF WTYM+ LE+L++ P+ F +++VFG +S+V+ T L +++ + LGH+LS F+V VWSR G +VN+ ++F ELLP+FF+AQT ++EG +P +DL G+L G+ + ++R P+ + + + ++ Sbjct: 105 EDDFGEDGTVERTIAAWKKTPPFTKAYLTASMAATGVGYVMNKNQFPEFFLLEWKPILTRLQIWRPFTAFLNFGPFGLGYLMTGHFVWTYMATLERLNHDRPYDFWLMIVFGCASMVVGYTFL---NISPRF-LGHNLSTFLVYVWSRYHEGMEVNLFELFNTRAELLPWFFLAQTFLLEGEVPILDLLGILFGHIYHHCKTTNIIRTPRFVTDWYNGDS 320 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1012.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1012.7.1 >prot_A-nodosum_M_contig1012.7.1 ID=prot_A-nodosum_M_contig1012.7.1|Name=mRNA_A-nodosum_M_contig1012.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=360bp MVTRYPLCIVCVAILALGLRSASARTLTRLMVARSLPRDDKHDSAVIARGback to top mRNA from alignment at A-nodosum_M_contig1012:76760..80987+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1012.7.1 ID=mRNA_A-nodosum_M_contig1012.7.1|Name=mRNA_A-nodosum_M_contig1012.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4228bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:76760..80987+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1012:76760..80987+ >mRNA_A-nodosum_M_contig1012.7.1 ID=mRNA_A-nodosum_M_contig1012.7.1|Name=mRNA_A-nodosum_M_contig1012.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:76760..80987+ (Ascophyllum nodosum dioecious)back to top |