mRNA_A-nodosum_M_contig1011.29.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 110 bits (275), Expect = 7.290e-25 Identity = 73/167 (43.71%), Postives = 97/167 (58.08%), Query Frame = 1 Query: 22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVV 522 +T P AQF I GLV +P YYRVP +RM LDLAV L +L ++ VV + D L P E A FY +A II E + R Y D WN LD+ L L++ G + R G++ G ALY L APL+F R+LFFAQ+ G MIQV+ M +++++F VV Sbjct: 783 LTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPL-TPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRC---ADGDN--SWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVV 943
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 107 bits (268), Expect = 6.480e-24 Identity = 69/170 (40.59%), Postives = 94/170 (55.29%), Query Frame = 1 Query: 16 NRMTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525 + +T FP A+FII G ++ P +YY+VP LRMCLDL + ++ ++ V ++ LEI Y I+ E + EY RD WN LDV +L LL G + R++ G + ALY L APL F RILFFAQI SQG MIQVM M + +F ++M Sbjct: 1097 SSITYFPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMY----GQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIM 1262
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 106 bits (264), Expect = 2.190e-23 Identity = 68/170 (40.00%), Postives = 94/170 (55.29%), Query Frame = 1 Query: 16 NRMTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525 + +T FP A+FII GL++ P +YY+VP LRMCLDL ++++ ++ V + +EI Y I+ E + EY RD WN LDV +L LL G + R++ G Q ALY L APL F RILFF QI SQG +IQVM M + +F ++M Sbjct: 852 SSITYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMY----GQVDDQSSRALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIM 1017
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE) HSP 1 Score: 100 bits (248), Expect = 3.000e-21 Identity = 68/168 (40.48%), Postives = 96/168 (57.14%), Query Frame = 1 Query: 22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525 +T FP A FI G+VALP +YY+VPL+RM LD V LA +T V +++K E+A Y VAAI+ EA+ + + Y D W AL + A FLAR + S G LY + +PL++ R+L++AQ+ SQG+ IQV+ M S++ QF VVM Sbjct: 635 LTFFPGAHFIATGVVALPNSYYKVPLMRMALDATVFTAALAFFTSRVL-LFEKGSLTIAEMAFAIYVVAAIMLEATEMWKDLAGYLLDRWKAPHFLALVVALAAFLARAIDSDS-----SWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYSMASELGQFFVVM 796
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 3.510e-20 Identity = 66/168 (39.29%), Postives = 95/168 (56.55%), Query Frame = 1 Query: 22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQVMVLMVSKVLQFAVVM 525 +T FP A FI G+VALP +YY+VPL+RM L+ + LA +T V +++K E+A Y VAAI+ EA+ + + Y D W AL + A FLAR S G LY + +PL++ R+L++AQ+ SQG+ IQV+ M S++ QF VVM Sbjct: 544 LTFFPGAHFIATGVVALPNSYYKVPLMRMALEAMIFTAALAFFTSRVL-LFEKGQLTIAEVAFAIYVVAAIMLEATEMWKDLAGYLLDRWKAPHFLALVVALAAFLARAIDPDS-----SWGRGLYAVGSPLMYWRLLYYAQVIPSQGSTIQVLYGMASELGQFFVVM 705
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 6.920e-16 Identity = 60/168 (35.71%), Postives = 84/168 (50.00%), Query Frame = 1 Query: 22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLL-ILLAVYTLVVAY---------------MYDKSLANPLEIALGFYAVAAIIAEASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMIQ 477 +T FP AQ I+ GL A P Y+RVP +RM LDL V + +++A+ T V+ + + ++L P + V + E + R+ Y D WN LD+ +L L+ G + R+ S Q+G A Y L APLL R LFF QIH QG MIQ Sbjct: 706 LTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRVVDWKS-----QLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQ 868
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.080e-14 Identity = 60/167 (35.93%), Postives = 84/167 (50.30%), Query Frame = 1 Query: 22 MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAV---LLILLAVYTLVVAYMYDKSLANPLEIALGFYAV--------AAIIA-----EASALGRSNREYFRDSWNWLDVPALFLLSAGFLARLWSTTSGNDLKQVGEALYLLVAPLLFPRILFFAQIHSSQGAMI 474 +T FP AQFI+ GL A Y+RVP++RM LDL V +L+ L+ + L + + + + F + A+IA E + R+ Y D WN LD+ L + GF+AR+ T +Q+G A Y L APLL R LFF QIH QG M+ Sbjct: 527 LTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAVIAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARVVDWT-----QQLGPAFYALSAPLLVSRALFFVQIHPLQGPMV 688 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1011.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1011.29.1 >prot_A-nodosum_M_contig1011.29.1 ID=prot_A-nodosum_M_contig1011.29.1|Name=mRNA_A-nodosum_M_contig1011.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=168bp MTLFPDAQFIIVGLVALPFTYYRVPLLRMCLDLAVLLILLAVYTLVVAYMback to top mRNA from alignment at A-nodosum_M_contig1011:218305..219574+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1011.29.1 ID=mRNA_A-nodosum_M_contig1011.29.1|Name=mRNA_A-nodosum_M_contig1011.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1270bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:218305..219574+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1011:218305..219574+ >mRNA_A-nodosum_M_contig1011.29.1 ID=mRNA_A-nodosum_M_contig1011.29.1|Name=mRNA_A-nodosum_M_contig1011.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:218305..219574+ (Ascophyllum nodosum dioecious)back to top |