mRNA_A-nodosum_M_contig1011.13.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE) HSP 1 Score: 252 bits (643), Expect = 3.940e-75 Identity = 144/223 (64.57%), Postives = 169/223 (75.78%), Query Frame = 2 Query: 11 PNATVLPPPPDGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 PNATV+P PP+GIPT+ TQV +LT EAQ V EVL E M +KG+G A + VERL AL++PRRK+L +DQ+ NGSA L +AE+DLK VIA F D +AP PAPV+ ++P EPAPKK++LS LEERR ARV AA GG ++GS E Q+ T RRVLI RE LVY AE QLDVD N+LG WNRRGTDSV +TT VTSPAEMPYLA ARLY GIEATSCQ Sbjct: 548 PNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGMGSAQVAVERLSALMDPRRKSLDSDQLENGSADLRKKAEDDLKAVIAKF-DVGPATAAPAPAPVMNLDPVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQ 769
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE) HSP 1 Score: 246 bits (627), Expect = 3.010e-74 Identity = 142/223 (63.68%), Postives = 167/223 (74.89%), Query Frame = 2 Query: 11 PNATVLPPPPDGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 PNATV+P PP+GIPT+ TQV +LT EAQ V EVL E M +KGVG A + VERL AL++PR ++L +DQ+ NGSA L +AE+DLK VIA F D +AP PAPV+ ++ EPAPKK++LS LEERR ARV AA GG ++GS E Q+ T RRVLI RE LVY AE QLDVD N+LG WNRRGTDSV +TT VTSPAEMPYLA ARLY GIEATSCQ Sbjct: 353 PNATVMPLPPEGIPTDDTQVMDLTAEAQCVLEVLQEKMREKGVGSAQVAVERLSALMDPRLRSLDSDQLENGSADLRKKAEDDLKAVIAKF-DVGPATAAPAPAPVMNLDRVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQ 574
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE) HSP 1 Score: 238 bits (607), Expect = 3.230e-69 Identity = 140/218 (64.22%), Postives = 164/218 (75.23%), Query Frame = 2 Query: 14 NATVLPPPPDGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEA 664 NATV+PPPPDGIPT+ +V +L+LEAQ V EVLLEVM +K V KA +VERL AL++PRRK+L +Q+ NGSA L RAEEDLK VIA F D Q A PAPVL V+P EPAPK+++LS LEERR ARV AAA G G SGS + Q + T RRVLI R+ LVY AE+ Q+DVD +LG W+RRGTDSVC+TT VTSP EMPYLA ARLY GIEA Sbjct: 514 NATVMPPPPDGIPTDEMEVTDLSLEAQEVLEVLLEVMGEKQVEKAVQQVERLSALMDPRRKSLNGEQLENGSAHLRKRAEEDLKAVIAQF-DVQPSEPASAPAPVLNVDPVEPAPKRKKLSRLEERRGARV-AAASGVGASGSVQAQGSATNRRVLIERDVLVYLAEKEQVDVDEFKVLGSWSRRGTDSVCATTGQVTSPTEMPYLAFIARLYLGIEA 729
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE) HSP 1 Score: 226 bits (576), Expect = 1.430e-65 Identity = 134/208 (64.42%), Postives = 155/208 (74.52%), Query Frame = 2 Query: 56 ESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 E QV EL+ AQGV EVLL+VME+K VGKA +VERL AL++PRRK+L ++ NGSA L +AEEDLK VIA F D Q AP PAPVL V+P EPA K+++LS LEERR ARV AAA GG SGS + Q + T RRVLI RE LVY AE Q++VD N+LG WNRRGTDSVCSTT VTSPAEMPYLA ARL+ GIEA+SCQ Sbjct: 552 EEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSLDGAKLENGSATLRKKAEEDLKAVIAQF-DVQPSEPAPAPAPVLNVDPVEPASKRKKLSRLEERRAARV-AAASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQ 757
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.400e-60 Identity = 131/238 (55.04%), Postives = 151/238 (63.45%), Query Frame = 2 Query: 14 NATVLPPPP----------------DGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 NA V PPPP G+ TE V +LT EAQGVR+VLLEVME+KGVGKA +VERL ALL+PRRK L A Q+ NG L AE DLK IA F A++ P P PAPV+ V+PAEPA KK++ S +EE + PQ VTGR VLI RE LVY AEQ Q+DVD NL+G WNRRGT+SVC TT VT+PAEMPYLA ARL+ GIEATSCQ Sbjct: 217 NAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRKDLDATQVGNGDEDLRIAAEADLKKFIATFT-AESVPPTPAPAPVVDVQPAEPALKKKKFSRIEEXXXXXXXXXXXXXXXX-TVAPQTPVTGRHVLIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQ 452
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE) HSP 1 Score: 195 bits (496), Expect = 3.870e-55 Identity = 125/215 (58.14%), Postives = 144/215 (66.98%), Query Frame = 2 Query: 41 DGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKER-LS*LEERREARVRAAAGGGGDS-GSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 DGI TE TQV LTLEAQ V +VL E+M++KGVGKA +VERL LL+PRRK L + NGS+ L T+AE DLK FA ++ PS P PAPV+ V+ AEPA KK+ S LE G+ +PQAA TGRRVLI RE LVY AEQ Q+DVD NLLG WNRRGTDSV + T VTSPAEMPYLA ARL+ GIEATSCQ Sbjct: 357 DGISTEETQVTGLTLEAQDVVQVLREMMDEKGVGKALQRVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFTGKFAQ-ESAPSTPAPAPVVNVDTAEPARKKKXPTSRLEXXXXXXXXXXXXXXXXXXGTTDPQAAGTGRRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQ 570
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE) HSP 1 Score: 187 bits (475), Expect = 3.900e-52 Identity = 129/247 (52.23%), Postives = 148/247 (59.92%), Query Frame = 2 Query: 2 IWVPNATVLPPPP-----------------DGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKK----ERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 I V +A V PPPP DGI T TQV +LTLEAQ V +VLLEVM++KGVGKA VERL LL+PRRK L + NGS+ L T+AE DLK I FA ++ PS P PAPV+ V+ AEPA KK RL +P+AA GRRVLI RE LVY AEQ Q+DVD N LG WNRRGTDSV + T V+SPAEMPYLA ARL+ GIEATSCQ Sbjct: 359 IRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQAEADLKAFIGKFAQ-ESAPSTPAPAPVVNVDTAEPARKKXXXTSRL--XXXXXXXXXXXXXXXXXXXXXTDPKAAGAGRRVLIEREMLVYLAEQPQVDVDDFNPLGFWNRRGTDSVSAATGKVSSPAEMPYLAFIARLHLGIEATSCQ 602
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE) HSP 1 Score: 164 bits (416), Expect = 2.230e-47 Identity = 105/188 (55.85%), Postives = 124/188 (65.96%), Query Frame = 2 Query: 122 MEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKER-LS*LEERREARVRAAAGGGGDS-GSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 M++ GVGKA +VERL LL+PRRK L + NGS+ L T+ E DLK I FA ++ PS P PAPV+ V+ A+PA KK++ S LE G+ +PQAA TGRRVLI RE LVY AEQ Q+DVD NLLG WNRRGTDSV + T VTSPAEMPYLA ARL+ GIEATSCQ Sbjct: 1 MDENGVGKALQRVERLFVLLDPRRKTLDDTHLRNGSSDLKTQVEADLKAFIGKFAQ-ESAPSTPAPAPVVNVDTADPARKKKKPTSRLEXXXXXXXXXXXXXXXXXXGTTDPQAAGTGRRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQ 187
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE) HSP 1 Score: 164 bits (415), Expect = 1.280e-46 Identity = 97/145 (66.90%), Postives = 109/145 (75.17%), Query Frame = 2 Query: 245 RAEEDLKGVIADFADAQT*PSAPVPAPVL-VEPAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 +AEEDLK VIA F D Q AP PAPVL V+P EPA K+++LS LEERR ARV AAA GG SGS + Q + T RRVLI RE LVY AE Q++VD N+LG WNRRGTDSVCSTT VTSPAEMPYLA ARL+ GIEA+SCQ Sbjct: 50 KAEEDLKAVIAQF-DVQPSEPAPAPAPVLNVDPVEPASKRKKLSRLEERRAARV-AAASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQ 192
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.530e-36 Identity = 98/226 (43.36%), Postives = 115/226 (50.88%), Query Frame = 2 Query: 11 PNATVLPPPPDGIPTESTQVAELTLEAQGVREVLLEVMEDKGVGKASLKVERLCALLEPRRKALGADQIVNGSAALTTRAEEDLKGVIADFADAQT*PSAPVPAPVLVE----PAEPAPKKERLS*LEERREARVRAAAGGGGDSGSAEPQAAVTGRRVLIGREELVYSAEQGQLDVDASNLLGLWNRRGTDSVCSTTSTVTSPAEMPYLALFARLYHGIEATSCQ 676 PNATV+P P +GIPT+ T V +LT EA V EVLL+VM KGVG A + ERL AL++PRRK LG+DQ+ NGSA L+ +AE+DLK VIA F + S P PAEPAPK++ +S LE RGT SV TT VTSPAEMPYLA ARLY GIEATSCQ Sbjct: 198 PNATVVPVPEEGIPTDDTPVTDLTAEAPCVLEVLLDVMRKKGVGSAQVAAERLSALMDPRRKLLGSDQLENGSADLSKKAEDDLKAVIAKFDVGPSTESTAAPXXXXXXXXXXPAEPAPKRKTVSRLE------------------------------------------------------------RGTSSVSPTTGKVTSPAEMPYLAFIARLYLGIEATSCQ 363 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1011.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1011.13.1 >prot_A-nodosum_M_contig1011.13.1 ID=prot_A-nodosum_M_contig1011.13.1|Name=mRNA_A-nodosum_M_contig1011.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=142bp MGAERHRLATPTGRHPHGIDPGSGAYLGGARRAGSTAGGDGRQGCGEGLSback to top mRNA from alignment at A-nodosum_M_contig1011:126156..126831+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1011.13.1 ID=mRNA_A-nodosum_M_contig1011.13.1|Name=mRNA_A-nodosum_M_contig1011.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=676bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:126156..126831+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1011:126156..126831+ >mRNA_A-nodosum_M_contig1011.13.1 ID=mRNA_A-nodosum_M_contig1011.13.1|Name=mRNA_A-nodosum_M_contig1011.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:126156..126831+ (Ascophyllum nodosum dioecious)back to top |