mRNA_A-nodosum_M_contig101.7.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI) HSP 1 Score: 174 bits (441), Expect = 3.800e-41 Identity = 98/259 (37.84%), Postives = 129/259 (49.81%), Query Frame = 1 Query: 595 CDRKAEAGPKSRPGEIDLFCSSHQSPAVIATRTEHCQFVGCWSTPKYGQRQGPLSFCQHHKRAGMHTNQNGQLLVATRDGSAYKDEDGAAAMGGPWTAGQIAVKDEIQYTTLSDFGRSSGEPNAYERSEPPQSPGQAVPQGPIEPVSLEHRRAQQAITSSPVPVIAVTPQFRKMCEVEGCRIQPSYGASGTSRPRFCSSHKQEGMVGLKNRPCTFTGCNTRPHYGLPGCRPIYCAKHKKAKMVHLLKEAIYREKVEGKR 1371
C+R E + G + + +A+RTE+C+ GC TP+YG++ GPL+ CQ HKRAG++T ++G LLVATRDGSA++++ G+++ + G ++G R+ CE C IQPSYG GTSRPRFCSSHK++ MV LKNRPC F GC+ RPHYGL R +YC HKK MVHLLKEA EK E KR
Sbjct: 149 CERGVEESRLPQDGGVISPPRTEDKKPAVASRTEYCKHTGCTRTPRYGRKNGPLTLCQSHKRAGLYTVRDGVLLVATRDGSAFREKAGSSSS-----------------VNSNKNGTATGA------------------------------------------------AARRKCEAPDCTIQPSYGDPGTSRPRFCSSHKEKQMVSLKNRPCLFPGCDIRPHYGLSMGRAVYCVSHKKDGMVHLLKEAKNLEKEELKR 342
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: A0A6H5KF29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF29_9PHAE) HSP 1 Score: 172 bits (437), Expect = 3.030e-40 Identity = 107/314 (34.08%), Postives = 145/314 (46.18%), Query Frame = 1 Query: 451 PRETCQPGDC-QKSLFGVDESKPTILCEFFREDSMTSVHHQDTSCCREGCDRKAEAGPKSRPGEIDLFCSSHQSPAVIATRTEHCQFVGCWS------------TPKYGQRQGPLSFCQHHKRAGMHTNQNGQLLVATRDGSAYKDEDGA--AAMGGPWTAGQIAVKDEIQYTTLSDFGRSSGEPNAYERSEPPQSPGQAVPQGPIEPVSLEHRRAQQAI-TSSPVPVIAVTPQF-RKMCEVEGCRIQPSYGASGTSRPRFCSSHKQEGMVGLKNRPCTFTGCNTRPHYGLPGCRPIYCAKHKKAKMVHLLKEA 1341
P E CQ C ++ + D +P + C R+D M V H +C +GC+ +A+ R G I FC+ H+ P V+ + C+ C TP+YG GPL+FC+ HKRAGM+T ++G L VATRDG A++ + G A + G D TT +D ++ N E + P ++P P P RK+CEV GC +QPS+GA GT +PRFC+ HK+EG V LKNRPC F TRPHYG HLLKEA
Sbjct: 28 PGEYCQVKHCGERPSYSDDGYEPAVRCRDHRKDGMLRVQHDHKTCGADGCNGEADVHYMGRDGRIHRFCARHKEPVVVLEQAVQCEVFHCCGFDGKDMHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGMLYVATRDGIAFRKDPGPPRATVNG----------DREGVTTTADAAATTT--NGPETAXPXXXXXXXXXXXXXXXXXXXXXXXXXXEEVNTPPPGSKKGPTLHRKLCEVPGCNVQPSFGAPGTGKPRFCTGHKEEGHVSLKNRPCIFXXXXTRPHYGPSMXXXXXXXXXXXXXXXHLLKEA 329
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: D8LH38_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH38_ECTSI) HSP 1 Score: 169 bits (429), Expect = 7.630e-40 Identity = 98/251 (39.04%), Postives = 125/251 (49.80%), Query Frame = 1 Query: 595 CDRKAEAGPKSRPGEIDLFCSSHQSPAVIATRTEHCQFVGCWSTPKYGQRQGPLSFCQHHKRAGMHTNQNGQLLVATRDGSAYKDEDGA--AAMGGPWTAGQIAVKDEIQYTTLSDFGRSSGEPNAYERSEPPQSPGQAVPQGPIEPVSLEHRRAQQAITSSPVPVIAVTPQFRKMCEVEGCRIQPSYGASGTSRPRFCSSHKQEGMVGLKNRPCTFTGCNTRPHYGLPGCRPIYCAKHKKAKMVHLLKEA 1341
C +A+ R G I FC+ H+ P V+ + CQ C TP+YG GPL+FC+ HKRAGM+T ++G L VATRDGSA++ + G A + G G A D TT G P + P + P P L +A + + + P RK+CEV GC +QPS+GA GT +PRFC+ HKQEG V LKNRPC F TRPHYG HLLKEA
Sbjct: 47 CTEEADVHYMGRDGRIHRFCTRHKEPVVVLEQAVQCQHGECDGTPRYGGHDGPLTFCRAHKRAGMYTTRDGVLYVATRDGSAFRKDPGPPRATVNGD-REGATAAADAAAITT--------GGPETATPATPSRGPKTDAXXX-XAPTVLSPSQAAEEVNTPPPGSKKGQTLHRKLCEVPGCNVQPSFGAPGTGKPRFCTGHKQEGHVSLKNRPCIFXXXXTRPHYGPSMXXXXXXXXXXXXXXXHLLKEA 287
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: D7G079_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G079_ECTSI) HSP 1 Score: 147 bits (371), Expect = 4.420e-37 Identity = 86/190 (45.26%), Postives = 106/190 (55.79%), Query Frame = 1 Query: 787 MHTNQNGQLLVATRDGSAYKDEDGAAAMGGPWTAGQIAVKDEIQYTTLSDFGRSSGEPNAYERSEPPQSPGQAVPQGPIEPVSLEHRRAQQAITSSPVPVIAVTPQFRKMCEVEGCRIQPSYGASGTSRPRFCSSHKQEGMVGLKNRPCTFTGCNTRPHYGLPGCRPIYCAKHKKAKMVHLLKEAIYREK 1356
M+T+++G+LL+ATRDGSA + AAA P G A+ P+ P+ G A P ++ P P + V +RK+CEVEGC +QPSYG SGTSRPRFC HK +GMVGLKNRPC F GC TRPHYGL R +YCA HKK MVHLLKE++ EK
Sbjct: 1 MYTSRDGKLLMATRDGSAIRK---AAA---PRAVGPKAI------------------PSKKVAKRAPKPEGAADP------------------SAGPRPDLRVQTMYRKLCEVEGCLVQPSYGLSGTSRPRFCREHKSKGMVGLKNRPCLFPGCTTRPHYGLSKGRAMYCASHKKDGMVHLLKESLNMEK 148
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: A0A6H5KHQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ6_9PHAE) HSP 1 Score: 137 bits (345), Expect = 6.870e-31 Identity = 111/292 (38.01%), Postives = 157/292 (53.77%), Query Frame = 1 Query: 2890 RLADNMDMTPSVEINVLKETRESARATAEASGPGRRARIPSRKALEASGKLKNEDIQWLTKEKKEEDAKRVKELKAQRKAAAAAGLKAGEVIEAVAI---------GGMGGGTSADTGGNGDGVETLSGLPKMTWRKLSPTEILEAAKRQPITKVAVKPPHCGSSVAASEKRDASDYEIGKRLIDTDAGTSDKCRHKKVVSEAHETVWMDSAKTSPGRSEDSTRQRGSLEVHKQALLDHTRGILPRSSSREAIVRDGESFSGSGQIGSV-SVCHFEGCSRKATFGVNGNVRY 3735
R A + PS ++ +L+ R+SA EASG GRRAR+PSRK LEA+GK+ +E QW+TKEKKEE A+ K+ +AQRKAA AAG K GEVIEA A G+G G ++ GG S + ++WRKL+PTEIL AA ++P + A GS A +E D ++ +GK+ T + D R ++ +E T D+ ++ S T SLE HK+ ++H+ R + + G Q +V ++C CSR A FGV+G VRY
Sbjct: 128 RTAGQSALAPSDDMRLLRNARQSAHE--EASGSGRRARVPSRKVLEAAGKMADETAQWMTKEKKEEQARINKKFRAQRKAAVAAGPKIGEVIEATASPSPRVESEEDGLGSGATSIRGGR-------SPVSNVSWRKLTPTEILLAAGKKPFVEGAASEVR-GSDAAMAEMMD--EHVVGKQPEQTPVASEDGDRSERKPAE---TTASDAEMSAQATSNAFTES--SLEHHKKNQVEHSSAPSESDKGRYRVQQAGR------QASAVKAICELNSCSRTAKFGVHGIVRY 396
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: A0A6H5K6U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6U1_9PHAE) HSP 1 Score: 120 bits (300), Expect = 5.360e-27 Identity = 85/178 (47.75%), Postives = 109/178 (61.24%), Query Frame = 1 Query: 2893 LADNMDMTPSVEINVLKETRESARATAEASGPGRRARIPSRKALEASGKLKNEDIQWLTKEKKEEDAKRVKELKAQRKAAAAAGLKAGEVIEAVAIGGMGGGTSADTGGNGDGVETLSGLPKMTWRKLSPTEILEAAKRQPITKVAVK--PPHCGSSVAASEKR---DASDYEIGKRL 3411
+A+ PS E+ +L+E R+SARA AEASG GRRAR PSRK LEASGK+ E QW+T+EKKEE A+ +LK QRKAAAAAGLK GEVIEA G G GDG+ + +WRKL+P EIL+AA + A K P + A +EK+ A++ + G+RL
Sbjct: 1 MAEAPGFPPSDEMRLLQEARDSARAAAEASGYGRRARAPSRKFLEASGKIVGESAQWMTREKKEEQARLSLQLKEQRKAAAAAGLKPGEVIEAATAAGAG----------GDGIRGENAPWNGSWRKLTPAEILQAAGKTAGVGKARKSLPGSTDTKGATTEKQREGPATEADTGRRL 168
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: D8LGW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW8_ECTSI) HSP 1 Score: 100 bits (249), Expect = 3.530e-18 Identity = 87/279 (31.18%), Postives = 119/279 (42.65%), Query Frame = 1 Query: 619 PKSRPGEIDLFCSSHQSPAV-------------------IATRTEHCQFVGCWSTPKYGQRQGPLSFCQHHKRAGMHT-NQNGQLLVATRDGSAYKDEDGAAAMGGPWTAGQIAVKDEIQYTTLSDFGRSSGEPNAYERSEPPQSPGQAVPQGPIEPVSLEHRRAQQAITSSPVPVIAVTPQFRKMCEVEGCRIQPSYGASGTSRPRFCSSHKQEGMVGLKNRPCTFTGCNTRPHYGLPGC-RPIYCAKHKKAKMVHLLKEAIYREKVEGKRDLGEAPS 1392
PK+ P + SS SP V +A + C++ GC KYG R P S CQ HKRAG +T N++G+LL+ATRDG A++ A+ P A + V + ++ +S +P S G VP HR+ + ++SS V RK +RP SS +E L+NR C F GC+ RP YGLPG R +YC HKK MV+L +A E KR AP+
Sbjct: 15 PKTAPADETRGTSSSLSPGVSPTSSLSPPPTSTSSPKTLLAPKAPRCEYPGCPKYAKYGLRDAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFR----TPAVAVPVLA--VTVPPSPASSEIAGMEAASAQPRRRSTG----SSGSLVP---------SHRKPKAKLSSS------VHTLKRK------------------NRPEPSSSGHEESPA-LQNRSCLFPGCDARPTYGLPGAARAVYCFSHKKGSMVNLFSQAPAVNNNEEKRVTAVAPT 249
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: A0A6H5L640_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L640_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 2.740e-17 Identity = 64/152 (42.11%), Postives = 91/152 (59.87%), Query Frame = 1 Query: 2890 RLADNMDMTPSVEINVLKETRESARATAEASGPGRRARIPSRKALEASGKLKNEDIQWLTKEKKEEDAKRVKELKAQRKAAAAAGLKAGEVIEAVAIGGMGGGTSADTGGNGDGVETLSGLPKMT--------WRKLSPTEILEAAKRQPIT 3321
R D M PSVE ++L++ RE+A+ A SG GRR R PSR+ALEASG+LK++ QW+T+E+K E+A+ EL+ QR+ AAG K+G V+EA G GT D G G GV G+ T W+K+SP + +A+++ T
Sbjct: 122 RSGDTAGMAPSVEFHLLRQAREAAKKEAAXSGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARIKAELREQRRQYKAAGFKSGVVLEAFVAKAAGTGTVGD--GVGGGVAGKIGVGSATTKHGRDPAWQKVSPEMLAASAEQEQAT 271
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: D8LEM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM4_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 3.140e-17 Identity = 68/149 (45.64%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 2890 RLADNMDMTPSVEINVLKETRESARATAEASGPGRRARIPSRKALEASGKLKNEDIQWLTKEKKEEDAKRVKELKAQRKAAAAAGLKAGEVIEAVAIGGMGGGTSADTGGNGDGVETLSGLPKMT--------WRKLSPTEILEAAKRQ 3312
R D M PSVE ++L++ RE A+ A ASG GRR R PSR+ALEASG+LK++ QW+T+E+K E+A+ EL+ QR+ AAGLK+G V+EA G GT+ D G G GV G+ T W+K+SP IL A+ Q
Sbjct: 172 RSGDTAGMAPSVEFHLLRQAREVAKKEAAASGGGRRPRAPSRRALEASGQLKHDGAQWMTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTAGD--GVGGGVAGELGVGSATTKHGRDPAWQKVSPG-ILAASPEQ 317
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 8.890e-17 Identity = 81/263 (30.80%), Postives = 112/263 (42.59%), Query Frame = 1 Query: 619 PKSRPGEIDLFCSSHQSPAVIAT-------------------RTEHCQFVGCWSTPKYGQRQGPLSFCQHHKRAGMHT-NQNGQLLVATRDGSAYKDEDGAAAMGGPWTAGQIAVKDEIQYTTLSDFGRSSGEPNAYERSEPPQSPGQAVPQGPIEPVSLEHRRAQQAITSSPVPVIAVTPQFRKMCEVEGCRIQPSYGASGTSRPRFCSSHKQEGMVGLKNRPCTFTGCNTRPHYGLPGC-RPIYCAKHKKAKMVHLLKEAI 1344
PK+ P + SS SP T + C++ GC + KYG R+ P S CQ HKRAG +T N++G+LL+ATRDG A++ A+ P A + V + ++ +S P S G +VP HR+ ++ ++SS V RK +RP SS +E KNR C F GC RP +GLPG R +YC HKK MV L EA+
Sbjct: 69 PKTAPADETRGTSSSLSPGASPTSSLXXXXXXXXXPKTLPVPKAPRCEYPGCPKSAKYGLREAPPSKCQAHKRAGQYTTNRHGELLMATRDGDAFR----TPAVAVPVPA--VTVPPSPASSEIAGTEAASARPRRRSTG----SSGSSVP---------SHRKPKENLSSS------VHTLKRK------------------NRPGTSSSRHEESPA-PKNRSCLFPGCGARPTHGLPGAARAVYCFSHKKGSMVDLFSEAL 287 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig101.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig101.7.1 >prot_A-nodosum_M_contig101.7.1 ID=prot_A-nodosum_M_contig101.7.1|Name=mRNA_A-nodosum_M_contig101.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1210bp MRALRSHKSGMRSSDPTAQARNPPCGHPDPVVLPRSAHTDQNHLESNGDDback to top mRNA from alignment at A-nodosum_M_contig101:206760..245705+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig101.7.1 ID=mRNA_A-nodosum_M_contig101.7.1|Name=mRNA_A-nodosum_M_contig101.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=38946bp|location=Sequence derived from alignment at A-nodosum_M_contig101:206760..245705+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig101:206760..245705+ >mRNA_A-nodosum_M_contig101.7.1 ID=mRNA_A-nodosum_M_contig101.7.1|Name=mRNA_A-nodosum_M_contig101.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=3630bp|location=Sequence derived from alignment at A-nodosum_M_contig101:206760..245705+ (Ascophyllum nodosum dioecious)back to top |