mRNA_A-nodosum_M_contig1008.4.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 497 bits (1279), Expect = 4.200e-171 Identity = 244/390 (62.56%), Postives = 292/390 (74.87%), Query Frame = 1 Query: 4 LDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAP-DVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSNT 1170 LD++ + + +P ++ KWLLT+EL + G++FYCRG+SIGGDCDELRIQSTGPTDFHEVR HGGS+YFE+T+VTSWDTPNK PQ Y GRSFLNCVSE + E C GQ +N+ GECRMDII+SE+GYLG+FD+ESYGLTWKVRGFC D SNP+VFDTTNVYG++ SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT GG AAGIFLHRSSD V+DNVV+DMQDAG+A+LES +ADI++N F++VK+GIR+SLG N V++N+F+ S GL+TY+GSD P D DGRP +N+F +N I N GVKIKE D+TVITDN F TS LEF DA T+W NT Sbjct: 111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD------------GGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTSELEFFDAQNTRWKGNT 488
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 489 bits (1259), Expect = 2.970e-163 Identity = 234/389 (60.15%), Postives = 278/389 (71.47%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167 +LD++ + P+ +T WLL +EL++ G +FYC+GTS GGDC++LRIQSTG DFHEVRGHGGSLYFE+T+VTSWDTPNK PQE Y++GRSFLNCVSE + + CEG KN+ GECRMDII+SE+ YLG+FD+ESYG+TWKVRGFC D SNPEVF+ TNVYGD+ SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA GGA AAGIFLHRSSD V+DN + +MQDAG+A+LESFDA I+ N KYGIR+SLG GNN VY N F S+YGL+TY GSD PDVS DGRP N+ N + + GVKIKE D+ NTF+ EF ++T T W N Sbjct: 473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPDVS-DGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFINVDAFEFPESTNTMWSGN 860
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 472 bits (1214), Expect = 4.220e-162 Identity = 235/398 (59.05%), Postives = 280/398 (70.35%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVR---------GFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167 +LD + + +PTSVT KWLL +EL+V G+IFYC G+ GGDCDELRIQSTGP D++EVRGHGGS+YF +T+VTSWDTPNK PQE Y+ GRSFLNCVSE + ETC+G KND GECRMDII+SEMGY+G+FD+ESYGLTWKVR GFC D SNP+VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY +A GG A GIFLHRSSD+ EVY N +++M DAG+A+LESF+ADIHDN V++GIR+SLG G N VYDN F+ CS +GL+TY GSD PDVS +GRP N F +N ++N+ GVK K +DN V+T+N F T LEF DA T W N Sbjct: 46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPDVS-NGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTEELEFYDAQATTWSGN 430
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 452 bits (1163), Expect = 1.240e-154 Identity = 225/390 (57.69%), Postives = 271/390 (69.49%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEY-ESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167 +LD ND + + T+ TGKWLLT++LFV G+ YCRG +GG+C ELRI+ST +DF E+RGHGG+LYFE+T+VTSWD + PQE YKDGRSF+ CVSE ++TC N+ GECRMDIIDSEMGYLG+ +E+YG+TWKVRGFC D SNP+VFD NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA GGA AAGIFLHRS D EVY N + +M DAG+A+LE+ DIHDN ++GIR+ LG NN V+DNVF G+FTY GSD P V GRP +N F++NTI TETGVKIKE+DN IT+N F T+ +EF++A W N Sbjct: 35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVG-GGRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTTEIEFNNAIDIVWSGN 420
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 416 bits (1070), Expect = 1.050e-141 Identity = 231/389 (59.38%), Postives = 263/389 (67.61%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSN 1167 +LD++ + + SPTSVT KWLL SEL+V G+IFYC G+ GGDCDELRIQSTGP D++EVRGHGGS+YF +T+VTSWDTPNK PQE Y+ GRSFLNCVSE + ETC+G+ KND GECRMDII+SEMGY+G+FDAESYGLTWKVRGFC D SNP+VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX GG +A GIFLHRSSD+ EVY G DAPDVS +GRP N F +N I+NT GVKIK +DN VI++N F T LEF DA T W N Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPDVS-NGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTEELEFFDAQATTWSDN 333
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 411 bits (1057), Expect = 6.520e-140 Identity = 198/326 (60.74%), Postives = 234/326 (71.78%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWK--------VRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSK 954 +LD++ + P+ +T WLL +EL++ G +FYC+GTS GGDC++LRIQSTG DFHEVRGHGGSLYFE+T+VTSWDTPNK PQE Y+ GRSFLNCVSE + + CEG KN+ GECRMDII+SE+ YLG+FD+ESYG+TWK VRGFC D SNPEVFD TNVYGD+ SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT GGA A GIFLHRSSD V+DN + +MQDAG+A+LE+FDA I+ NT KYGIR+SLG GNN+VY N F S+ Sbjct: 22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD------------GGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDISQ 335
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI) HSP 1 Score: 394 bits (1011), Expect = 4.030e-129 Identity = 208/401 (51.87%), Postives = 265/401 (66.08%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESDET--CEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFC-VDKS-----NPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDV-SLDGRPGENMFFDNTISNT--ETGVKIKEADNTVITDNTFVETSLLEFSDATGTQWLSNT 1170 +LDEN+D++ + TG WLL L V+ GS GT+ GD D LR+ ST DF EVRG+GG+L+F++T VTSWDT N +E DGRSF+NCV++++ C+G+ ++GECRMDII S MG +GWFDAESYGLTWKVRG C +D N E+F+ NVYGDI NS+I+ MYYG YSYGHQGGVW +N M DN QYGFDPHDDSD LTI+ GG A GIFLHRSSD EV+DNVVY+MQDAG+A++ES+DA+I+DN+FTN +YGIR+SLG G N++ +N+F ++YGL+TY GSD PDV + +GRP +N+F NTI GV IKE D+ V DN F S EF D++ T W+ NT Sbjct: 216 VLDENNDVVGG--TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSD-DFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFEDSSDTTWVDNT 613
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 389 bits (999), Expect = 7.550e-125 Identity = 206/396 (52.02%), Postives = 254/396 (64.14%), Query Frame = 1 Query: 1 ILDENDDIMYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEYESD--ETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLD--GRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLE---FSDATGTQWLSN 1167 +LD ND+++ S TG WLL ++ V GS+ G GGD LRIQSTG D++E+RGHGGSL F +T VTSWDT K +YK RSF+ CVSE +D +TC+G N GECRMDII SEMG +G+ AESYG++WKVRG+C + NPEVF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA GG A GIFLHRSSD CEV+ N VYDM+DAG+AI+ES A IHDNTFTNVKYGIR+S+G N+V +N F +C +YG++TY+G+D P+ S D G +N F NT+ E GVKI++A+ V TDN F E S E F D W +N Sbjct: 428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTV---EGGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNN 818
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 365 bits (937), Expect = 1.540e-119 Identity = 194/381 (50.92%), Postives = 236/381 (61.94%), Query Frame = 1 Query: 46 TGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTF----VETSLLEFSDATGTQWLSNT 1170 TG WLLT EL+V G GT GGD DELR+ ST T + +R HGGSL F T V SWDT P ED DGRS+++ VSE + DETCEG KN GE RMDI +SE+GYLG+ D+ESYGLTWKVRGFC DKSNPE+FD NVYG++ +SDIHH+ +G+Y+YGHQ G W NKMHDN YGFDPHDDSD+LTI G +AGIFLHRSSD V N V+D DAGLA+LESF+AD+ +NTF N KYG+R+S+G +N+ +N+ SKY +TY GSD PDV GR N+F N+ S E +KIKEAD T DN F + ++ F DA + NT Sbjct: 104 TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNT 483
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 365 bits (936), Expect = 1.920e-119 Identity = 192/373 (51.47%), Postives = 232/373 (62.20%), Query Frame = 1 Query: 37 TSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHEVRGHGGSLYFENTLVTSWDTPNKGPQEDYKDGRSFLNCVSEY--ESDETCEGQPKNDFGECRMDIIDSEMGYLGWFDAESYGLTWKVRGFCVDKSNPEVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAQAAGIFLHRSSDSCEVYDNVVYDMQDAGLAILESFDADIHDNTFTNVKYGIRISLGGGNNMVYDNVFDQCSKYGLFTYRGSDAPDVSLDGRPGENMFFDNTISNTETGVKIKEADNTVITDNTFVETSLLEFSDATG 1149 TS TG WLLT EL+V G G+ GGD DELR+ ST T F +R HGGSL F +T V SWDT P ED DGRS+++ +SE + DETCEG KN GE RMDI SE+GYLG++D+ESYGLTWKVRGFC DKSNPEVFD NVYG++ +SDIHHM +G+Y+YGHQ G W NKMHDN YGFDPHDDSD+LTI G +AGIFLHRSSD V N V+D DAGLA+LESF+AD+ +NTF N KYG+R S+G +N+ +N ++Y ++Y G+D PDV GR N+F N+ S E +KIKEAD T DN F E DA G Sbjct: 97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVF------EVGDADG 462 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1008.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1008.4.1 >prot_A-nodosum_M_contig1008.4.1 ID=prot_A-nodosum_M_contig1008.4.1|Name=mRNA_A-nodosum_M_contig1008.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=382bp MYSPTSVTGKWLLTSELFVLRGSIFYCRGTSIGGDCDELRIQSTGPTDFHback to top mRNA from alignment at A-nodosum_M_contig1008:144810..146961- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1008.4.1 ID=mRNA_A-nodosum_M_contig1008.4.1|Name=mRNA_A-nodosum_M_contig1008.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2152bp|location=Sequence derived from alignment at A-nodosum_M_contig1008:144810..146961- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1008:144810..146961- >mRNA_A-nodosum_M_contig1008.4.1 ID=mRNA_A-nodosum_M_contig1008.4.1|Name=mRNA_A-nodosum_M_contig1008.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at A-nodosum_M_contig1008:144810..146961- (Ascophyllum nodosum dioecious)back to top |