mRNA_A-nodosum_M_contig10078.4.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: D7FTP3_ECTSI (Putative GPI-anchor transamidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP3_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 6.960e-152 Identity = 233/318 (73.27%), Postives = 251/318 (78.93%), Query Frame = 1
Query: 1 SSVLLFLGCIPLVAA-RIIPTTWAGVGDGASRHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQAAMAK-EDPSVTRVRQFDG--MAPVTLPDYVSQVCLGNSCQP 942
S +L L +PL +A + +T AG +SRHNNNWAVL VCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFP GVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPG PPSK LAT+EHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLF+EI S +V+CIGSSVRGENSYA+GSD TIGLSLMDRFTSAMLDFFQAA+ K ED + RVR F AP+ L + V+ L +S +P
Sbjct: 31 SLAVLLLCSVPLFSAVGVTASTAAGAKGASSRHNNNWAVL---------------------------VCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPGGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGTPPSKTLATDEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFEEIDSKDVICIGSSVRGENSYARGSDATIGLSLMDRFTSAMLDFFQAAITKGEDVTANRVRGFSSGNSAPLNLRNDVTLGALMHSMRP 321
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: A0A7S2V326_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V326_9STRA) HSP 1 Score: 308 bits (789), Expect = 1.300e-100 Identity = 154/252 (61.11%), Postives = 184/252 (73.02%), Query Frame = 1
Query: 76 GDGAS--RHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQ 825
GDG RHNNNW VL V TSRFWFNYRH+ANTLS+YHTV+RLGIPDS I+LMLADDMPCNARNP+P +YN+KD +LNLY VEVDYRG +V+VE+FLRLLTGRT PG P SK+L T+EHSN+LI+M+GHGGD FLKF D EEVSSHD+ A+ EM +K RYH +L +VDTCQA TL +I SP V+ IGSS GENSYA SD ++G++++DRFT A LDFF+
Sbjct: 23 GDGTEKLRHNNNWVVL---------------------------VSTSRFWFNYRHIANTLSIYHTVKRLGIPDSQIILMLADDMPCNARNPYPGEIYNNKDRKLNLYGDVVEVDYRGTDVTVENFLRLLTGRTKPGLPFSKLLNTDEHSNILIFMSGHGGDGFLKFQDSEEVSSHDIADAIEEMNIKGRYHEILLIVDTCQAGTLGQQIYSPNVVSIGSSKLGENSYAHHSDHSLGVAVIDRFTEATLDFFE 247
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: A0A804L7S9_MUSAM (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A804L7S9_MUSAM) HSP 1 Score: 291 bits (744), Expect = 9.740e-93 Identity = 149/272 (54.78%), Postives = 191/272 (70.22%), Query Frame = 1
Query: 10 LLFLGCIPLVAARIIPTTWAGVGDGASRHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQ 825
LLFL +PL ++ P++WA + HNNNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CNARN +PA V+N+++H+LNLY +VEVDYRG EV+VE+FLR+LTGR P P SK L ++E S++L+YM GHGGD+FLKF D EE+ SHDL A+R+M+ K R+ +L MVDTCQA TLF ++ SP VL IGSS++GENSY+ D+ IG+S++DRFT L FF+
Sbjct: 16 LLFLVLVPLTSSS--PSSWA------TMHNNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFLRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVRQMKEKSRFKELLIMVDTCQAATLFSQLQSPGVLAIGSSMKGENSYSHHLDSNIGVSVVDRFTFYTLAFFE 252
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: UPI001FB0F723 (putative GPI-anchor transamidase n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0F723) HSP 1 Score: 287 bits (735), Expect = 3.280e-91 Identity = 148/273 (54.21%), Postives = 190/273 (69.60%), Query Frame = 1
Query: 10 LLFLGCIPLVAARIIPTTWAGVGDGAS-RHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQ 825
+LFLG L A I TT++ A+ +H NNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CNARN +PA V+N+K+H+LNLY +VEVDYRG EV+VE+FLR+LTGR P SK L ++E S++L+YM GHGGD+FLKF D EE+ SHDL A+R+M+ K R+ +L MVDTCQA TLF+++ SP VL IGSS++GENSY+ D+ +G+S++DRFT L FF+
Sbjct: 22 ILFLGSTCLCDAAIAQTTFSSSSSSATTKHTNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNKNHKLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVRQMKEKLRFKELLIMVDTCQAATLFNQLVSPGVLSIGSSMKGENSYSHHLDSDVGVSVVDRFTYYTLAFFE 267
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: A0A2P2JFN2_RHIMU (GPI-anchor transamidase family protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JFN2_RHIMU) HSP 1 Score: 282 bits (722), Expect = 7.050e-90 Identity = 144/268 (53.73%), Postives = 185/268 (69.03%), Query Frame = 1
Query: 94 HNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQAAMAKEDPSVTRVRQFDGMAPVTL 897
H NNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CN+RN FPA V+N+++H LNLY +VEVDYRG EV+VE+F R+LTGR P P SK L ++E S+VL+YM GHGGD+FLKF D EE+ SHDL A+R+M+ K R+ +L MVDTCQA TLFD++ SP VL IGSS++GENSY+ D+ +G+S++DRFT L FF+ ++ S++ + F+ P TL
Sbjct: 2 HTNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNSRNKFPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFFRVLTGRHAPAVPRSKRLLSDEGSHVLLYMTGHGGDEFLKFQDSEELQSHDLADAVRQMKEKHRFKELLIMVDTCQAATLFDQLHSPGVLAIGSSMKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSL--FNSYDPNTL 240
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: UPI001C4BAFD5 (putative GPI-anchor transamidase n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4BAFD5) HSP 1 Score: 282 bits (721), Expect = 2.750e-89 Identity = 148/295 (50.17%), Postives = 199/295 (67.46%), Query Frame = 1
Query: 13 LFLGCIPLVAARIIPTTWAGVGDGASRHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQAAMAKEDPSVTRVRQFDGMAPVTL 897
L L +PL+A+ ++WA S H+NNWAVL VCTSR+WFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CN RN +PA V+N+++H+LNLY +VEVDYRG EV+VE+F+R+LTGR P P SK L ++E S++L+YM GHGGD+FLKF D EE+ SHDL A+++M+ K R+ +L MVDTCQA TLF+++ SP VL IGSS++GENSY+ D+ IG+S++DRFT L FF+ + S++ + F+ P TL
Sbjct: 17 LLLFSVPLIASS---SSWA------SMHHNNWAVL---------------------------VCTSRYWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNMRNNYPAQVFNNENHQLNLYGDNVEVDYRGYEVTVENFMRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKNRFKELLIMVDTCQAATLFNQLQSPGVLAIGSSMKGENSYSHHLDSDIGVSVVDRFTYYTLAFFEKLNMYSNASLSSL--FNSYNPRTL 273
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: A0A7I8K0I5_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K0I5_SPIIN) HSP 1 Score: 281 bits (719), Expect = 6.020e-89 Identity = 145/274 (52.92%), Postives = 188/274 (68.61%), Query Frame = 1
Query: 4 SVLLFLGCIPLVAARIIPTTWAGVGDGASRHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQ 825
+VLLFLG + ++ + + ++ HNNNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CNARN +PA V+N+++H++NLY +VEVDYRG EV+VE+FLR+LTGR P SK L ++E S++L+YM GHGGDQFLKF D EE+ SHDL A+++M K+R+ +L MVDTCQA TLF + SP VL IGSSV+GENSY+ D+ IG+S++DRFT L FF+
Sbjct: 14 AVLLFLGLVSMLHPQSSHAS-------SAMHNNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNNYPAQVFNNENHQINLYGDNVEVDYRGYEVTVENFLRVLTGRHETAVPRSKRLLSDEGSHILLYMTGHGGDQFLKFQDSEELQSHDLADAVKQMSEKQRFKELLIMVDTCQAATLFSQFDSPGVLSIGSSVKGENSYSHHLDSDIGVSVVDRFTFYTLAFFE 253
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: B8LLJ3_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LLJ3_PICSI) HSP 1 Score: 281 bits (719), Expect = 7.210e-89 Identity = 140/265 (52.83%), Postives = 183/265 (69.06%), Query Frame = 1
Query: 76 GDGASRHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQAAMAKEDPSVTRVRQ 870
G + H NNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CNARN +PA V+N+++H++NLY +VEVDYRG EV+VE+FLR+LTGR P P SK L ++E S++L+YM GHGGDQFLKF D EE+ SHDL A+ +M K+RY +L MVDTCQA TL+ ++ SP VL IGSS++GENSY+ D+ +G+S++DRFT L FF+ ++ S++ + Q
Sbjct: 30 GPAGTMHTNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNSYPAQVFNNENHQINLYGDNVEVDYRGYEVTVENFLRVLTGRHDPAVPRSKRLLSDEGSHILLYMTGHGGDQFLKFQDSEEIQSHDLADAIEQMREKRRYKELLIMVDTCQAATLYSQLYSPGVLAIGSSLKGENSYSHHLDSDVGVSVVDRFTFYTLVFFERLDMYDNSSLSSLFQ 267
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: A0A2G5CZ09_AQUCA (Uncharacterized protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2G5CZ09_AQUCA) HSP 1 Score: 276 bits (705), Expect = 1.540e-88 Identity = 137/263 (52.09%), Postives = 183/263 (69.58%), Query Frame = 1
Query: 73 VGDGASRHNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQAAMAKEDPSVTR 861
+ + ++ H NNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLGIPD I+LMLADDM CN+RN +PA V+N+++H LNLY +VEVDYRG EV+VE+FLR+LTGR P SK L ++E S++L+YM GHGGD+FLKF D EE+ SHDL A+++M+ K R+ +L MVDTCQA TLF+++ SP VL IGSS++GENSY+ D+ +G+S++DRFT L FF+ + S++R
Sbjct: 37 ISNASTMHTNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNSRNKYPAEVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHENAVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKLRFKELLIMVDTCQAATLFNQLHSPGVLAIGSSMKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNTYSNASLSR 272
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Match: V4VSC2_CITCL (Uncharacterized protein n=5 Tax=Citrus TaxID=2706 RepID=V4VSC2_CITCL) HSP 1 Score: 275 bits (704), Expect = 2.750e-88 Identity = 136/255 (53.33%), Postives = 180/255 (70.59%), Query Frame = 1
Query: 94 HNNNWAVLAESGANSRDSSRFPRRLPFMYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPCNARNPFPAGVYNSKDHELNLYEGDVEVDYRGEEVSVESFLRLLTGRTLPGPPPSKMLATNEHSNVLIYMNGHGGDQFLKFHDMEEVSSHDLGGALREMELKKRYHRVLFMVDTCQAMTLFDEITSPEVLCIGSSVRGENSYAKGSDTTIGLSLMDRFTSAMLDFFQAAMAKEDPSVT 858
H NNWAVL VCTSRFWFNYRH+ANTLS+Y TV+RLG+PD I+LMLADDM CNARN +PA V+N+++H+LNLY +VEVDYRG EV+VE+FLR+LTGR P SK L ++E S++L+YM GHGGD+FLKF D EE+ SHDL A+++M+ K+R+ +L MVDTCQA TLF ++ SP VL IGSS++GENSY+ D+ +G+S++DRFT L FF+ ++ S++
Sbjct: 40 HTNNWAVL---------------------------VCTSRFWFNYRHMANTLSLYRTVKRLGVPDERIILMLADDMACNARNKYPAQVFNNENHKLNLYGDNVEVDYRGYEVTVENFLRVLTGRHEAAVPRSKHLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQAATLFSQLHSPGVLAIGSSMKGENSYSHHLDSDVGVSVVDRFTFYTLAFFEKLNMYDNASLS 267 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10078.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10078.4.1 >prot_A-nodosum_M_contig10078.4.1 ID=prot_A-nodosum_M_contig10078.4.1|Name=mRNA_A-nodosum_M_contig10078.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=266bp MYTANRHRVCTSRFWFNYRHVANTLSVYHTVRRLGIPDSNIVLMLADDMPback to top mRNA from alignment at A-nodosum_M_contig10078:12057..17120+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10078.4.1 ID=mRNA_A-nodosum_M_contig10078.4.1|Name=mRNA_A-nodosum_M_contig10078.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5064bp|location=Sequence derived from alignment at A-nodosum_M_contig10078:12057..17120+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10078:12057..17120+ >mRNA_A-nodosum_M_contig10078.4.1 ID=mRNA_A-nodosum_M_contig10078.4.1|Name=mRNA_A-nodosum_M_contig10078.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at A-nodosum_M_contig10078:12057..17120+ (Ascophyllum nodosum dioecious)back to top |