mRNA_A-nodosum_M_contig10060.2.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A1Y1K2V0_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K2V0_PHOPY) HSP 1 Score: 81.3 bits (199), Expect = 4.260e-15 Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 1 VMEVHRMLSHPSEDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEFEEISART 420 + E H ML H + K GIE T Q CE C + K R + +RA+ G+ VD+ GPM+ +S GG+ Y + F D ++F+++KF+K+KS+TT + ++ +K +R D GGEF T Sbjct: 435 IQEWHEMLGHQNRVQVEKVLNRNGIEYTKQDFFCEACVKGKQHRKVFQVR-QQRAQREGEVMNVDLCGPMEITSYGGSRYFICFTCDYSKFRLIKFLKEKSETTKGIAEVLNFVKNQCGRPLKMLRCDGGGEFNNKDVTT 573
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6DA37_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DA37_9ROSI) HSP 1 Score: 78.6 bits (192), Expect = 3.670e-14 Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 94 GACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 G CE C K R P T RA + + DV GPM+ SL GN Y ++F+DDCTR+ V F+K KS+ + A T IK +R+DNG E+ Sbjct: 21 GVCEVCQMGKQARLPFPTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWVYFLKHKSEVVQVFMKFKAAVETETGCKIKTIRSDNGTEY 122
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J5YG39_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YG39_9ROSI) HSP 1 Score: 75.9 bits (185), Expect = 3.330e-13 Identity = 45/134 (33.58%), Postives = 66/134 (49.25%), Query Frame = 1 Query: 13 HRMLSHPSED-----ITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 H+ LSH + + +++K E +T G E C K R P T RA + + DV GPM+ SL GN Y ++F+DDCT++ V F+K KS+ + A T IK +R+DNG E+ Sbjct: 383 HQRLSHANFNSMARMVSKKMVENF-TKTVQNEGVYEVCQMGKQARLPFPTNTSWRASTKLELVHTDVCGPMRTESLSGNRYFILFIDDCTKYCWVYFLKHKSEVVQVFMKFKAVVETEIGCKIKTIRSDNGTEY 515
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI) HSP 1 Score: 75.5 bits (184), Expect = 4.400e-13 Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 13 HRMLSHPS-----EDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 H+ L H + + ++++ E +T CE C K R P T RA + + DV GPM+ SL GN Y ++F+DDCTR+ + F+K KS+ + A T IK +R+DNG E+ Sbjct: 122 HQRLGHTNFKSMAQMVSKEMVENF-TKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 254
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6D0F7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D0F7_9ROSI) HSP 1 Score: 75.5 bits (184), Expect = 4.480e-13 Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 1 Query: 100 CETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 CE C K + P RA+ R Q + D+ GPMK +SL G+ Y +F+DDCTRF V F+K+KSD A +KC+R+DNG E+ Sbjct: 454 CEVCQLDKQTKLPFPVNKAWRAQQRLQLVYTDICGPMKTTSLNGSRYFALFIDDCTRFCWVSFLKQKSDVVGFFCKFKALAKNQASCKLKCIRSDNGTEY 553
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6H6E3_TENMO (Integrase catalytic domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6H6E3_TENMO) HSP 1 Score: 74.3 bits (181), Expect = 5.810e-13 Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 10 VHRMLSHPS-EDITRKTAETM----GIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 +HR L H + +DI+ E + + T + CE C Q K R P++++ +V DV GPM+ SLGG Y + F+DD +R+ V+F+K K++ A IA + +KC+++DNGGE+ Sbjct: 100 LHRRLGHANTKDISSAVREHVVRGVRLANTPEKFNCEICLQGKMSRSPFPRRSNRLNKVL-DLVHTDVCGPMRTQSLGGAKYFIEFIDDASRWCEVRFLKSKAEVFKATTEYIALVENQKGKKVKCLQSDNGGEY 233
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6D2N4_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D2N4_9ROSI) HSP 1 Score: 74.7 bits (182), Expect = 8.160e-13 Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 13 HRMLSHPS-----EDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 H+ L H + + ++++ E +T CE C K R P T RA + + DV GPM+ SL GN Y ++F+DDCTR+ + F+K KS+ + A T IK +R+DNG E+ Sbjct: 461 HQRLGHANFKSMAQMVSKEMVENF-TKTVQSEDVCEVCQMGKQARLPFPTNTTWRATSKLELVHSDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 593
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J5Y9W8_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y9W8_9ROSI) HSP 1 Score: 74.3 bits (181), Expect = 1.060e-12 Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 13 HRMLSHPS-----EDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 H+ L H + + ++++ E +T CE C K R P T RA + + DV GPM+ SL GN Y ++F+DDCTR+ + F+K KS+ + A T IK +R+DNG E+ Sbjct: 441 HQRLGHANFKSMAQMVSKEMVENF-TKTVQSEDVCEVCQMGKQARLPFPTDTTWRASSKLELVHSDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEY 573
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A8J6HVS3_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HVS3_TENMO) HSP 1 Score: 74.3 bits (181), Expect = 1.120e-12 Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 10 VHRMLSHPS-EDITRKTAETM----GIETTGQWGACETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 +HR L H + +DI+ E + + T + CE C Q K R P++++ +V DV GPM+ SLGG Y + F+DD +R+ V+F+K K++ A IA + +KC+++DNGGE+ Sbjct: 302 LHRRLGHANTKDISSAVREHVVRGVRLANTPEKFNCEICLQGKMSRSPFPRRSNRLNKVL-DLVHTDVCGPMRTQSLGGAKYFIEFIDDASRWCEVRFLKSKAEVFKATTEYIALVENQKGKKVKCLQSDNGGEY 435
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Match: A0A0J7KDP1_LASNI (Retrovirus-related gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDP1_LASNI) HSP 1 Score: 73.9 bits (180), Expect = 1.570e-12 Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1 Query: 100 CETCFQAKAKRHAVPKKTDERARVRGQRFFVDVGGPMKHSSLGGNSYVVIFVDDCTRFKVVKFVKKKSDTTAALLSLIADYITPQKLSIKCVRTDNGGEF 399 CE C +AK R P K+D V D+ GPM+ S+GG Y++ F+DDC+R+ + F+K KSD AL + IKC+++DNG EF Sbjct: 454 CEACLEAKITRSPFPIKSDRTTAVL-DLVHTDLCGPMRIPSIGGAKYILHFIDDCSRWGQIYFLKSKSDVFQALKEYVVMIENQTGKKIKCIQSDNGKEF 552 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10060.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10060.2.1 >prot_A-nodosum_M_contig10060.2.1 ID=prot_A-nodosum_M_contig10060.2.1|Name=mRNA_A-nodosum_M_contig10060.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=145bp MEVHRMLSHPSEDITRKTAETMGIETTGQWGACETCFQAKAKRHAVPKKTback to top mRNA from alignment at A-nodosum_M_contig10060:9011..9448+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10060.2.1 ID=mRNA_A-nodosum_M_contig10060.2.1|Name=mRNA_A-nodosum_M_contig10060.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=438bp|location=Sequence derived from alignment at A-nodosum_M_contig10060:9011..9448+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10060:9011..9448+ >mRNA_A-nodosum_M_contig10060.2.1 ID=mRNA_A-nodosum_M_contig10060.2.1|Name=mRNA_A-nodosum_M_contig10060.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=435bp|location=Sequence derived from alignment at A-nodosum_M_contig10060:9011..9448+ (Ascophyllum nodosum dioecious)back to top |