mRNA_A-nodosum_M_contig1005.10.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI) HSP 1 Score: 236 bits (603), Expect = 2.440e-72 Identity = 123/206 (59.71%), Postives = 151/206 (73.30%), Query Frame = 1 Query: 1 AEDLRQNVQELVAKNDIPGAVVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGT---VKPKPRA-KTETILSTTPDYLNKMARHITFLERQNQG 606 ++ +R+ ++ LVAK D AVV+CEELEILTA+TPFG++ ++ +HL LLL LDDVNN RHLWRRLPA+AKA GGE + LW VGK LWKRD+ AQAALR REWS P+A YV+L+ R+ ERQL II + F LPLE VA ++ SV++AEK C KEGWEV A VKP R +TI + TPDYL KMA HI FLERQ+QG Sbjct: 8 SDTIRKKIEALVAKKDFRAAVVKCEELEILTASTPFGQQHQDAANVHLALLLALDDVNNARHLWRRLPAAAKAAGGETAALWEVGKSLWKRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDATAEKAVKPSVRLIPDDTIPAATPDYLQKMANHIAFLERQSQG 213
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A6P8Y321_THRPL (COP9 signalosome complex subunit 8 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y321_THRPL) HSP 1 Score: 107 bits (266), Expect = 1.960e-23 Identity = 62/182 (34.07%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 61 VVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGT-----VKPKPRAKTETILSTTPDYLNKMARHITFLE 591 V C ELE +P GE + L + L D+ N + LW+R+PASAK+ ELS +W VG+C+WKRD A AAL+ WS + ++ L++ L R +D+I+ ++S+ L +A + G + EAE+ + GW + A T V+P P ++ +++++ LNK+ +++FLE Sbjct: 7 VSTCAELERQELTSPTGEASPQEYAQLLAIYLCQSDLCNAKFLWKRIPASAKSSNEELSLIWKVGQCMWKRDYPAAYAALQA-PWSDNVRHIMTTLQEELRSRAIDLIANAYSSIALSDLAAMAGINDREAERISNERGWIIDAETEMVHPVRPPPSSQ---VITSSEGQLNKLTDYVSFLE 184
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2FNN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNN9_9STRA) HSP 1 Score: 103 bits (258), Expect = 3.910e-22 Identity = 62/188 (32.98%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 34 VAKNDIPGAVVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGTVKPKPRAKTETILSTTP-DYLNKMARHITFLER 594 V + A CEELE+ T +TP + H+ + ++L+D++N RHLWRR+ KAGG EL W VGK LWKR+I A AAL+ R WS +A + L + + E + ++ + + ++ + A +G A C W AG V P A S + +A H+TFLE+ Sbjct: 9 VISGNYAAAARLCEELELETCSTPNTDAAPARYARHIMVYMILNDLDNARHLWRRIDEGIKAGGSELEATWEVGKLLWKREISAAYAALQ-RTWSAELAPLATALLEAVREHEFALLGKAYTNVGVSTAAAALGMDEAGALAFCTARNWTADAGGVMLTPVAPAPAEPSFEGLQQMQYLAEHVTFLEK 195
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A6J1T3B4_FRAOC (COP9 signalosome complex subunit 8 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T3B4_FRAOC) HSP 1 Score: 96.3 bits (238), Expect = 1.480e-19 Identity = 59/179 (32.96%), Postives = 95/179 (53.07%), Query Frame = 1 Query: 70 CEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGT-----VKPKPRAKTETILSTTPDYLNKMARHITFLE 591 C ELE L +P GE + L + L D+ N + LW+R+P S K ELS +W VG+C+WKRD A +AL+ WS + + L+D L R +D+I+ ++S+ + ++ + G + EAE+ GW + A T V+P P + T ++ LNK+ +++FLE Sbjct: 10 CAELERLELISPTGEATAQEYAQLLAIYLCQSDLCNAKFLWKRIPTSLKNSHDELSLIWKVGQCMWKRDYPAAYSALQV-SWSDNVRHIMLALQDELRTRAVDLIANAYSSITVSDLSAMAGINDREAERLSNARGWIIDAETEMVHPVRPPPSSHVTT---SSEGQLNKLTDYVSFLE 184
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2XW30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW30_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.240e-17 Identity = 66/186 (35.48%), Postives = 94/186 (50.54%), Query Frame = 1 Query: 7 DLRQNVQELVAKNDIPGAVVQCEELEILT---AATPFGEK--DEEWMKIHLTLLLVLDDVNN---GRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWS-PPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQ--AGTVKPKPRAKTET 531 D ++ ELV+ A+ ++LE+L + +P GE EE +NN + LWRR P+S K+ +L LW VG L +R I A AL GR+W P +A V L+ + ERQ+ + SR + SLPL +A +G+ A + C +GWE AGTVKP+P A T T Sbjct: 6 DSKRRYLELVSTTKFKEALPVLQDLELLRLEQSLSPGGEDMWGEEXXXXXXXXXXXXXXLNNLAEAKLLWRRSPSSFKSQEADLPALWAVGALLIQRHISQAYIALDGRQWRRPAVAALVPHLKAAIKERQMQLFSRAYRSLPLAAMAEALGTDQSAALRACRAKGWECDESAGTVKPRPPAATTT 191
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2SPW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW3_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.370e-16 Identity = 65/197 (32.99%), Postives = 98/197 (49.75%), Query Frame = 1 Query: 22 VQELVAKNDIPGAVVQCEELEILTAATPFGEKDEEWMKI-HLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKR-DIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVD-EAEKECAKEGWEV-QAGTVKPKPRAKTETILSTTPDYLNKMARHITFLERQN 600 ++E + D A EE+E+ A P + + L L L+L+D++N RHLWRR+ S K G EL + V LW+R DI GA LRG EWS + + LRD L +RQL + + + S+ L +G + D + C +GW V +AG ++ R L + L ++ H+T LERQ+ Sbjct: 36 LEEKLRAGDFQAARPIIEEIELRDADAPSTDPRIPIVYAKQLFLYLILNDMHNARHLWRRIDDSCKTDGSELVKVHAVASLLWQRSDIPGAFNLLRG-EWSETLKPLATALRDGLQKRQLSLFEKAYTSVTLSTATAALGFTSDADTAAACTAQGWHVDEAGVIRVTKRPAAVKELQGF-EQLEMLSHHVTLLERQS 230
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A3R7J8J7_9STRA (COP9 signalosome complex subunit 8 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8J7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.500e-16 Identity = 57/182 (31.32%), Postives = 96/182 (52.75%), Query Frame = 1 Query: 73 EELEILTAATPFGEKD----EEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMG-SSVDEAEKECAKEGWEVQAGT--VKPKPRAKTETILSTTPDY--LNKMARHITFLE 591 EELE++ AA ++ +L ++L+ ++N+ R LW+R+ AK EL +WG+GK LW R++ GA AA+ REWSP + + LR E +++SR ++++ + VA +G + ++A + C WEV A + PKP A ST D L+ +++ + LE Sbjct: 40 EELELVAAAATSAPDPAALTSDFYASYLLIVLLSQNLNDARFLWKRISPEAKHNSEELQAVWGIGKALWDRNLAGAYAAM-DREWSPSLQELIEALRTSTRESTAELLSRAYSTISVNDVALALGFNRPEDACQYCVSLNWEVSAADQLILPKPLANVRRGPSTVVDLNQLDTLSKSVLHLE 220
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: UPI001C202F05 (COP9 signalosome complex subunit 8 n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C202F05) HSP 1 Score: 84.0 bits (206), Expect = 3.370e-15 Identity = 47/183 (25.68%), Postives = 89/183 (48.63%), Query Frame = 1 Query: 49 IPGAVVQCEELEILTAATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAG--TVKPKPRAKTETILSTTPDYLNKMARHITFLE 591 IP C +LE P G L + L +D+ + + LW+R+P + E++ +W +G+ LWK+D G AL+G W+ P+A + L +++ ++I R ++S+ L+ V + G + D + W + T++P P++ + +++ D L K+ +TFLE Sbjct: 2 IPNYDQFCADLEKQELEAPNGIPSPTVYAQLLAIYLYQNDLCDAKFLWKRIPQNVSTSNPEIAAIWAIGQKLWKKDFPGTYQALKGYNWTEPVAPIIEALEEKVRASVFNLIGRSYSSISLDTVVLMTGLNKDAVLQITRDLKWTLNEDGVTLQPTPKSLPAPLQTSSEDQLFKLTDFVTFLE 184
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A7S2GZT5_9STRA (COP9 signalosome complex subunit 8 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZT5_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 4.340e-14 Identity = 60/194 (30.93%), Postives = 96/194 (49.48%), Query Frame = 1 Query: 28 ELVAKNDIPGAVVQCEELEILT--AATPFGEKDEEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRD-IQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEAEKECAKEGWEVQAGTVKPKPRAKTETILSTTPD---YLNKMARHITFLE 591 E +A+ D A+ CEELE T A + + + LTL L+ +D++N RHLWRR+ K ELS +W + LW R+ I +LR + WSP IA + + + +RQ +++S+ + + L T + DE + C K GW+ +P T + + D +L+ +A+HIT LE Sbjct: 17 EKIAERDFATALRNCEELEFETIGAQATDAQAHARYCR-QLTLYLITNDMDNARHLWRRIGNDFKGVESELSAIWSIASNLWHRNNIPMVFKSLR-QTWSPEIAPLMQKFIETIRDRQFELLSKAYMKVTLAATITELSLPEDEVVEYCVKRGWKFDPTIRVFEP--STPPVKDVSFDGIQHLDYLAKHITSLE 206
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Match: A0A2D4BXT1_PYTIN (COP9 signalosome complex subunit, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXT1_PYTIN) HSP 1 Score: 78.2 bits (191), Expect = 9.360e-13 Identity = 45/162 (27.78%), Postives = 85/162 (52.47%), Query Frame = 1 Query: 121 EEWMKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIQGAQAALRGREWSPPIAGYVSLLRDRLWERQLDIISRGFNSLPLERVATLMGSSVDEA-EKECAKEGWEVQAGT--VKPKPRAKTETILSTTPDYLNKMARHITFLERQ 597 E++ +L ++L+ ++N+ R LW+R+P+ K L +W +GK LWKRD + AA+ R+W + ++LLR+ E +++ ++++PL+ A +G + A C W+V T + PKP ++ LS+ L ++ ++ LE Q Sbjct: 71 EQFYASYLVIVLLAQNLNDARFLWKRIPSETKQLSDLLPSVWSIGKALWKRDFAASYAAMN-RDWPEGVRELIALLRESTRESAAELLGVAYSTIPLKEAAVALGFDDESALVAYCKSLEWDVSLETKLLHPKPLPRSAPELSSL-QQLESISNYVLHLEEQ 230 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1005.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1005.10.1 >prot_A-nodosum_M_contig1005.10.1 ID=prot_A-nodosum_M_contig1005.10.1|Name=mRNA_A-nodosum_M_contig1005.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=160bp MKIHLTLLLVLDDVNNGRHLWRRLPASAKAGGGELSDLWGVGKCLWKRDIback to top mRNA from alignment at A-nodosum_M_contig1005:87173..90503- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1005.10.1 ID=mRNA_A-nodosum_M_contig1005.10.1|Name=mRNA_A-nodosum_M_contig1005.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3331bp|location=Sequence derived from alignment at A-nodosum_M_contig1005:87173..90503- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1005:87173..90503- >mRNA_A-nodosum_M_contig1005.10.1 ID=mRNA_A-nodosum_M_contig1005.10.1|Name=mRNA_A-nodosum_M_contig1005.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at A-nodosum_M_contig1005:87173..90503- (Ascophyllum nodosum dioecious)back to top |