mRNA_A-nodosum_M_contig1003.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1003.1.1
Unique NamemRNA_A-nodosum_M_contig1003.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1003.1.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.840e-29
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    4 VLEEVLRSWEALEKHYLDNEAGGNFPLAVHKTAIEELYSLMKPVALLIKNSQRSGGPTGLSTFIDLCTLQATTLDMEKPLLITVP 258
            VLEE+LRSW+ALE+HY  NE GG+FPLA HKT IEELYSLMKP+++++K SQ  G PTGLSTF  L  L+A TLD+ KPL +TVP
Sbjct:  425 VLEEILRSWQALEEHYQKNEQGGSFPLAQHKTVIEELYSLMKPISVIMKESQEKGLPTGLSTFAALVMLRADTLDVTKPLEVTVP 509
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BLAST of mRNA_A-nodosum_M_contig1003.1.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.430e-5
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   79 PLAVHKTAIEELYSLMKPVALLIKNSQRSGGPTGLSTFIDLCTLQATTLDMEKPLLITVP 258
            PLA H+  I+ELYSL+KPVA LI   Q++  PTG +  + L TL+ +T +++  L +  P
Sbjct:  281 PLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTP 340
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BLAST of mRNA_A-nodosum_M_contig1003.1.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.460e-5
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   61 EAGGNFPLAVHKTAIEELYSLMKPVALLIKNSQRSGGPTGLSTFIDLCTLQATTLDMEKPLLITVP 258
            E G + PL+ H   I+ELYSL++PVA +I   Q++  PTG +  + L  L+ +TL+ + PL I  P
Sbjct:  383 EEGEDSPLSPHVHEIDELYSLIQPVAEVIATCQQTHFPTGQAAVLGLAALKLSTLNADAPLDILTP 448
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1003.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE6.840e-2967.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI4.430e-543.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI4.460e-540.91Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1003contigA-nodosum_M_contig1003:18067..18324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866359.2227376-CDS-A-nodosum_M_contig1003:18066..183241680866359.2227376-CDS-A-nodosum_M_contig1003:18066..18324Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1003 18067..18324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1003.1.1prot_A-nodosum_M_contig1003.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1003 18067..18324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1003.1.1

>prot_A-nodosum_M_contig1003.1.1 ID=prot_A-nodosum_M_contig1003.1.1|Name=mRNA_A-nodosum_M_contig1003.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
KVLEEVLRSWEALEKHYLDNEAGGNFPLAVHKTAIEELYSLMKPVALLIK
NSQRSGGPTGLSTFIDLCTLQATTLDMEKPLLITVP
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mRNA from alignment at A-nodosum_M_contig1003:18067..18324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1003.1.1 ID=mRNA_A-nodosum_M_contig1003.1.1|Name=mRNA_A-nodosum_M_contig1003.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig1003:18067..18324- (Ascophyllum nodosum dioecious)
AAGGTCCTGGAGGAAGTGCTTCGTAGCTGGGAGGCCCTGGAGAAGCACTA
CCTCGACAACGAAGCGGGTGGCAACTTCCCTCTGGCCGTTCACAAGACGG
CCATCGAGGAGCTGTACAGCCTGATGAAGCCGGTCGCACTGCTGATCAAG
AACAGTCAGCGGAGCGGCGGGCCGACGGGGCTCAGCACTTTCATCGACCT
CTGCACGCTGCAGGCTACCACGCTCGACATGGAGAAGCCGCTGCTTATCA
CGGTCCCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1003:18067..18324-

>mRNA_A-nodosum_M_contig1003.1.1 ID=mRNA_A-nodosum_M_contig1003.1.1|Name=mRNA_A-nodosum_M_contig1003.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig1003:18067..18324- (Ascophyllum nodosum dioecious)
AAGGTCCTGGAGGAAGTGCTTCGTAGCTGGGAGGCCCTGGAGAAGCACTA
CCTCGACAACGAAGCGGGTGGCAACTTCCCTCTGGCCGTTCACAAGACGG
CCATCGAGGAGCTGTACAGCCTGATGAAGCCGGTCGCACTGCTGATCAAG
AACAGTCAGCGGAGCGGCGGGCCGACGGGGCTCAGCACTTTCATCGACCT
CTGCACGCTGCAGGCTACCACGCTCGACATGGAGAAGCCGCTGCTTATCA
CGGTCCCT
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