mRNA_A-nodosum_M_contig10024.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10024.1.1
Unique NamemRNA_A-nodosum_M_contig10024.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10024.1.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 2.220e-47
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 IDVSPLQKCIDKLKEVAERYHNQRSLARLAQFCRDGEDIHRLRARIEAVVPIMGLAGVANNADKLQEIRDILRPRPKLAPMPKKAPTTNSLHVVRDGVVDRVCKILGGEGGPAVA 345
            IDV PLQ+C+DKLKEVAERYH++  LARLAQF RDGEDI RLR RIE VVPIMGL+GV NN +KL +I   L+P PKLAP+PKKAP T S HVVRDGVVDRVCKILGG+GGPA+A
Sbjct:   90 IDVKPLQECVDKLKEVAERYHDRGRLARLAQFRRDGEDIQRLRKRIEDVVPIMGLSGVVNNGEKLDQILARLQPGPKLAPVPKKAPFTKSFHVVRDGVVDRVCKILGGDGGPAMA 204
[Close]
BLAST of mRNA_A-nodosum_M_contig10024.1.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.460e-36
Identity = 78/120 (65.00%), Postives = 90/120 (75.00%), Query Frame = 1 
Query:    1 IDVSPLQKCIDKLKEVAERYHNQRSLARLAQFCRDGEDIHRLRARIEAVVPIMGLAGVANNADKLQEIRDIL-----RPRPKLAPMPKKAPTTNSLHVVRDGVVDRVCKILGGEGGPAVA 345
            IDVSPLQ C+DKL EVA+RYH+Q  LARLAQF RDG+DI RLRARIEA+VPIMGLAGV N  D+L+++R IL     RPRPKLAP+P   P   + H VRD V D V KIL G+  PAVA
Sbjct:  168 IDVSPLQGCVDKLDEVAKRYHDQGCLARLAQFRRDGDDIQRLRARIEAIVPIMGLAGVVNIMDRLEDVRQILARLQPRPRPKLAPVPPGLPAGEAWHAVRDHVEDEVYKILSGDE-PAVA 286
[Close]
BLAST of mRNA_A-nodosum_M_contig10024.1.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.390e-23
Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = 1 
Query:    1 IDVSPLQKCIDKLKEVAERYHNQRSLARLAQFCRDGEDIHRLRARIEAVVPIMGLAGVANNADKLQ----EIRDILRPRPKLAPMPKKAPTTNSLHVVRDGVVDRVCKILGGEGGPAVA 345
            ++VSPL+ C+ +L+EVAERY  +    RL  F +D EDI  L  RI   +  +  AGV    + +Q    EI   L+PRPKLAP+P   P   S H +RDGVVDRV  ILGG+GGPAVA
Sbjct:   83 VNVSPLEDCVKELEEVAERYGKKSCCTRLTHFQKDDEDIRDLEKRISTAIDDLTAAGVVEVGNLMQQQVGEILARLQPRPKLAPVPPGVPMGQSWHTMRDGVVDRVYDILGGDGGPAVA 201
[Close]
BLAST of mRNA_A-nodosum_M_contig10024.1.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.230e-6
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:  214 LRPRPKLAPMPKKAPTTNSLHVVRDGVVDRVCKILGGEGGPAVA 345
            L PRPKL  +P   P   S H +RDGVVDRV  ILGG+GGPA A
Sbjct:  272 LPPRPKLVSVPPGVPMGQSWHTMRDGVVDRVYAILGGDGGPAAA 315
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JSI2_9PHAE2.220e-4775.65NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KE50_9PHAE2.460e-3665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G330_ECTSI1.390e-2348.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0A6_9PHAE7.230e-661.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10024contigA-nodosum_M_contig10024:9288..9850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZX2
PFAMsNB-ARC,TPR_10,TPR_12,TPR_16,TPR_4,TPR_7,TPR_8
Model size347
Max annot lvl2759|Eukaryota
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.86e-10
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size345
COG categoryC
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866359.1470397-CDS-A-nodosum_M_contig10024:9287..94941680866359.1470397-CDS-A-nodosum_M_contig10024:9287..9494Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10024 9288..9494 +
1680866359.1573248-CDS-A-nodosum_M_contig10024:9710..98481680866359.1573248-CDS-A-nodosum_M_contig10024:9710..9848Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10024 9711..9848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10024.1.1prot_A-nodosum_M_contig10024.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10024 9288..9848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10024.1.1

>prot_A-nodosum_M_contig10024.1.1 ID=prot_A-nodosum_M_contig10024.1.1|Name=mRNA_A-nodosum_M_contig10024.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
IDVSPLQKCIDKLKEVAERYHNQRSLARLAQFCRDGEDIHRLRARIEAVV
PIMGLAGVANNADKLQEIRDILRPRPKLAPMPKKAPTTNSLHVVRDGVVD
RVCKILGGEGGPAVA
back to top

mRNA from alignment at A-nodosum_M_contig10024:9288..9850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10024.1.1 ID=mRNA_A-nodosum_M_contig10024.1.1|Name=mRNA_A-nodosum_M_contig10024.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at A-nodosum_M_contig10024:9288..9850+ (Ascophyllum nodosum dioecious)
ATTGATGTTTCTCCTCTCCAAAAGTGTATCGACAAGCTCAAGGAGGTGGC
CGAACGCTACCATAACCAAAGGAGCTTGGCCAGGCTGGCGCAGTTTTGCA
GAGACGGCGAAGACATCCACAGGCTTCGCGCCCGCATTGAGGCCGTCGTT
CCAATCATGGGACTCGCGGGTGTCGCGAACAACGCGGACAAACTCCAAGA
GATTCGGGTGAGGCTGTTTCTCTCACGTTCGATCACCGGTGAAACATAAT
TCGGCTTTTACGTCCCGTCTACTGTTGGCACAATACGAGAATTTGGGCCC
TGTCGTAACAAGAGGCCATGCACGTCACTCTGCGTCTTCAACTTTTGCTT
CATCCCCCTTTCAACTACATCGCGACAAAACCCTAAGCCAAGGATACCTC
CTCCGTCTTGCGTTCTTGCACAGGATATTTTACGTCCACGACCCAAGCTA
GCACCGATGCCGAAAAAGGCTCCTACCACCAACTCATTGCACGTTGTGCG
CGATGGGGTGGTAGACAGAGTGTGCAAGATCCTAGGGGGGGAAGGAGGGC
CAGCGGTGGCGGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10024:9288..9850+

>mRNA_A-nodosum_M_contig10024.1.1 ID=mRNA_A-nodosum_M_contig10024.1.1|Name=mRNA_A-nodosum_M_contig10024.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig10024:9288..9850+ (Ascophyllum nodosum dioecious)
ATTGATGTTTCTCCTCTCCAAAAGTGTATCGACAAGCTCAAGGAGGTGGC
CGAACGCTACCATAACCAAAGGAGCTTGGCCAGGCTGGCGCAGTTTTGCA
GAGACGGCGAAGACATCCACAGGCTTCGCGCCCGCATTGAGGCCGTCGTT
CCAATCATGGGACTCGCGGGTGTCGCGAACAACGCGGACAAACTCCAAGA
GATTCGGGATATTTTACGTCCACGACCCAAGCTAGCACCGATGCCGAAAA
AGGCTCCTACCACCAACTCATTGCACGTTGTGCGCGATGGGGTGGTAGAC
AGAGTGTGCAAGATCCTAGGGGGGGAAGGAGGGCCAGCGGTGGCG
back to top