mRNA_A-nodosum_M_contig10020.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10020.1.1
Unique NamemRNA_A-nodosum_M_contig10020.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10020.1.1 vs. uniprot
Match: A0A6H5JK75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK75_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.710e-11
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 3 
Query:   66 MEGYVEGEDGADP----------------FAWRVKTRAGAGSAQT-AGLLAARSSGDAEATSPVHGAYGMAEVEDEDDLLASHMEFMQ 278
            MEG+VEG+D  D                  + R+ TRAG G+A + AG++AARSSG A+  SPVHGAYG+A  E+ +DLL+SHM+FMQ
Sbjct:    1 MEGFVEGDDPGDAPPPPAVTPSTAAAPGSNSKRLTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQ 88
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BLAST of mRNA_A-nodosum_M_contig10020.1.1 vs. uniprot
Match: D7FT00_ECTSI (Avl9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT00_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.910e-9
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 3 
Query:  114 RVKTRAGAGSAQT-AGLLAARSSGDAEATSPVHGAYGMAEVEDEDDLLASHMEFMQ 278
            RV TRAG G+A + AG++AARSSG A+  SPVHGAYG+A  E+ +DLL+SHM+FMQ
Sbjct:   17 RVTTRAGTGTAASLAGMVAARSSGAADGISPVHGAYGLAIEEEVEDLLSSHMKFMQ 72
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10020.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK75_9PHAE8.710e-1148.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT00_ECTSI1.910e-964.29Avl9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10020contigA-nodosum_M_contig10020:731..1984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size358
Hectar predicted targeting categoryother localisation
Exons2
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866359.0605235-CDS-A-nodosum_M_contig10020:731..8081680866359.0605235-CDS-A-nodosum_M_contig10020:731..808Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10020 732..808 -
1680866359.073884-CDS-A-nodosum_M_contig10020:1704..19841680866359.073884-CDS-A-nodosum_M_contig10020:1704..1984Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10020 1705..1984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10020.1.1prot_A-nodosum_M_contig10020.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10020 732..1984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10020.1.1

>prot_A-nodosum_M_contig10020.1.1 ID=prot_A-nodosum_M_contig10020.1.1|Name=mRNA_A-nodosum_M_contig10020.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
QDYFTLEGFSYKSRPSGTGSRQWRVTWRVKTVPTPSHGGLRLGQGQDRRK
RPGCWLRDRRETRKPRAPYMALTGWRRWRTRTTCWQATWSSCRGRRLPPS
RGRGASLHCSVGGRLPSCR
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mRNA from alignment at A-nodosum_M_contig10020:731..1984-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10020.1.1 ID=mRNA_A-nodosum_M_contig10020.1.1|Name=mRNA_A-nodosum_M_contig10020.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1254bp|location=Sequence derived from alignment at A-nodosum_M_contig10020:731..1984- (Ascophyllum nodosum dioecious)
CAGGACTACTTCACCCTTGAGGGGTTTTCCTATAAAAGCCGGCCTTCCGG
TACTGGCAGTCGGCAATGGAGGGTTACGTGGAGGGTGAAGACGGTGCCGA
CCCCTTCGCATGGAGGGTTAAGACTAGGGCAGGGGCAGGATCGGCGCAAA
CGGCCGGGTTGCTGGCTGCGAGATCGTCGGGAGACGCGGAAGCCACGAGC
CCCGTACATGGCGCTTACGGGATGGCGGAGGTGGAGGACGAGGACGACTT
GTTGGCAAGCCACATGGAGTTCATGCAGAGGTGAGGTGGCGAGATGGGCG
CTGGTTTCTTTGAAGCATAATCCTTGATTTGTTCCGGTTTGTCTGTGTAT
GTGTGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAACCACGC
AATCCGGCCCTGTCATCCTAGTCATTCTATGTGTGTGTGTGTGTGTGTGT
GTGTATTTATTAAATTGCACATAACCGCGCAATCCGGCCCTGTCATCCTA
GTCATTCTATGCCACTCGCATTGATCCTCCCAAGGGGGGATCAACGATAC
TTGTTACGAAAACCTCTGATCAGGCGCGACAGAGGGGGCGTGTGTGTGTG
TGTGTGTTGTGTGTGTGTTGAAGCAGCGAATCGTGAAACAGATTTAATCC
ATCAAGTGGGAAAAAATATCCCTCTCGTCTACTCCCACCCCCGTCGGTTT
TCATTCACATAACAAGTAGTATTAATATAAAATGCAAACCCGTCTTAAAA
CAACATACTTCCAAATGTTGGTAACTGTAGACCGTTCTGATCACAATCAA
GTTTTGTAGTGTTTTTTTGTCCTATTGGTGCTTTTGAAAGAAGTAACAGC
AATCTTGTCACATGTAGGCTCTTTGGGATTCGGAGTTTATGTATTGTACG
TTCATGTGTTCATTACCACTGTAGATTTTATCGTTTAATGAAAATTTCGT
AATATAATCAAAACTATGAGGAAAAGAAAGGTTTACAAGGTTTATTATTG
GGCTTTCGTTTCATGGTTTTATACAGTAACGTGCATTTTTTTAGGGGGGA
GAACAAAACTATCACTTGGTTTGTTCCAGTTTGATTGTCCTTGTGGTTTC
AATGATCGAAGCTGTATGCTACACTCAAACTATGCTATTTACGAGTGGGG
GTTGCATTTTTTATGTTACACCACAGGAAGGCGACTGCCCCCCAGCAGAG
GCCGGGGAGCAAGTCTTCATTGCTCAGTCGGAGGTCGTCTGCCCAGCTGT
CGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10020:731..1984-

>mRNA_A-nodosum_M_contig10020.1.1 ID=mRNA_A-nodosum_M_contig10020.1.1|Name=mRNA_A-nodosum_M_contig10020.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig10020:731..1984- (Ascophyllum nodosum dioecious)
CAGGACTACTTCACCCTTGAGGGGTTTTCCTATAAAAGCCGGCCTTCCGG
TACTGGCAGTCGGCAATGGAGGGTTACGTGGAGGGTGAAGACGGTGCCGA
CCCCTTCGCATGGAGGGTTAAGACTAGGGCAGGGGCAGGATCGGCGCAAA
CGGCCGGGTTGCTGGCTGCGAGATCGTCGGGAGACGCGGAAGCCACGAGC
CCCGTACATGGCGCTTACGGGATGGCGGAGGTGGAGGACGAGGACGACTT
GTTGGCAAGCCACATGGAGTTCATGCAGAGGAAGGCGACTGCCCCCCAGC
AGAGGCCGGGGAGCAAGTCTTCATTGCTCAGTCGGAGGTCGTCTGCCCAG
CTGTCGG
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