mRNA_A-nodosum_M_contig1001.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1001.8.1
Unique NamemRNA_A-nodosum_M_contig1001.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1001.8.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 44.7 bits (104), Expect = 9.600e-5
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = -1 
Query:   78 NHILIGYLGSLVGRRIIGSVSVQFMP 155
            NHI+IGYLGSLV + IIG V VQFMP
Sbjct:   27 NHIVIGYLGSLVAQGIIGEVEVQFMP 52
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1001.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUA0_9PHAE9.600e-576.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1001contigA-nodosum_M_contig1001:222450..222809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.6449978-UTR-A-nodosum_M_contig1001:222449..2224691680866358.6449978-UTR-A-nodosum_M_contig1001:222449..222469Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1001 222450..222469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.656598-CDS-A-nodosum_M_contig1001:222469..2225281680866358.656598-CDS-A-nodosum_M_contig1001:222469..222528Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 222470..222528 +
1680866358.6713395-CDS-A-nodosum_M_contig1001:222733..2228091680866358.6713395-CDS-A-nodosum_M_contig1001:222733..222809Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 222734..222809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1001.8.1prot_A-nodosum_M_contig1001.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1001 222470..222809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1001.8.1

>prot_A-nodosum_M_contig1001.8.1 ID=prot_A-nodosum_M_contig1001.8.1|Name=mRNA_A-nodosum_M_contig1001.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=45bp
MYILRTESSANKSGGYAYTRHELNGDAADDSTTNKGPEVADEDVI
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mRNA from alignment at A-nodosum_M_contig1001:222450..222809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1001.8.1 ID=mRNA_A-nodosum_M_contig1001.8.1|Name=mRNA_A-nodosum_M_contig1001.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:222450..222809+ (Ascophyllum nodosum dioecious)
AGTGACAAGGAACACCAGACATGTATATTTTGCGTACAGAAAGCAGTGCC
AACAAATCGGGGGGATACGCATATACCAGGTATGTGTTTGAGCAACACGG
GGGCAAGGTGAAAGGTAGATTGGTCGTGTCGAAGGTGATGCACGTTCAGA
GAAGACACGGTGTACAGAATGGAAGGAATGAGGGATAACACAAATGAACA
AACCTTCTTTCTCCGCACGCACCAGGGTACACGTATTTCACCTGGAAAAC
GCCTGATCGATCTTAATATGGGTATGACCCACAGGCATGAACTGAACGGA
GACGCTGCCGATGATTCTACGACCAACAAGGGACCCGAGGTAGCCGATGA
GGATGTGATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1001:222450..222809+

>mRNA_A-nodosum_M_contig1001.8.1 ID=mRNA_A-nodosum_M_contig1001.8.1|Name=mRNA_A-nodosum_M_contig1001.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=135bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:222450..222809+ (Ascophyllum nodosum dioecious)
ATGTATATTTTGCGTACAGAAAGCAGTGCCAACAAATCGGGGGGATACGC
ATATACCAGGCATGAACTGAACGGAGACGCTGCCGATGATTCTACGACCA
ACAAGGGACCCGAGGTAGCCGATGAGGATGTGATT
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