mRNA_A-nodosum_M_contig1001.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1001.7.1
Unique NamemRNA_A-nodosum_M_contig1001.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.000e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSASYK 156
            +IGS  V F+ VGHTHIKIDQ FSR S G   R++FTR +  + F  SYK
Sbjct:   69 VIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYK 118
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BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.240e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSASYK 156
            +IGS  V F+ VGHTHIKIDQ FSR S G   R++FTR +  + F  SYK
Sbjct:   69 VIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYK 118
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BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSASYK 156
            +IGS  V F+ VGHTHIKIDQ FSR S G   R++FTR +  + F  SYK
Sbjct:  236 VIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYK 285
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BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSASYK 156
            +IGS  V F+ VGHTHIKIDQ FSR S G   R++FTR +  + F  SYK
Sbjct:  181 VIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYK 230
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BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.440e-9
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSASY 153
            +I  V + FM VGHTH+KIDQ FSR S G K +N+FTR + A+   ASY
Sbjct:   45 VIRVVEINFMMVGHTHMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASY 93
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BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.630e-7
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSASYK 156
            +IG   V F+ +GHTHIKIDQ FSRL  G   R++FT+ +  + F  SYK
Sbjct:   69 VIGFAEVCFLILGHTHIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYK 118
[Close]
BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 2.120e-6
Identity = 22/25 (88.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:    7 IIGSVSVQFMPVGHTHIKIDQAFSR 81
            IIG V VQFMPVGHTHIKIDQ FSR
Sbjct:   42 IIGEVEVQFMPVGHTHIKIDQVFSR 66
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1001.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE2.000e-956.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE3.240e-956.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE3.250e-956.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE3.250e-956.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCW3_9PHAE4.440e-955.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE6.630e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE2.120e-688.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1001contigA-nodosum_M_contig1001:221877..222770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006815072.1
PFAMsAnk_2,Cohesin_HEAT,Nipped-B_C
Model size157
Max annot lvl2759|Eukaryota
KEGG koko:K06623,ko:K06672
KEGG Pathwayko04068,ko04110,ko04111,map04068,map04110,map04111
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.21e-07
EggNOG OGsCOG0666@1|root,KOG1020@1|root,KOG0504@2759|Eukaryota,KOG1020@2759|Eukaryota
Descriptioncohesin loading
Cds size156
COG categoryK
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.894226-CDS-A-nodosum_M_contig1001:221877..2219531680866358.894226-CDS-A-nodosum_M_contig1001:221877..221953Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 221878..221953 -
1680866358.9096432-CDS-A-nodosum_M_contig1001:222690..2227701680866358.9096432-CDS-A-nodosum_M_contig1001:222690..222770Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 222691..222770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1001.7.1prot_A-nodosum_M_contig1001.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1001 221878..222770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1001.7.1

>prot_A-nodosum_M_contig1001.7.1 ID=prot_A-nodosum_M_contig1001.7.1|Name=mRNA_A-nodosum_M_contig1001.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
RRIIGSVSVQFMPVGHTHIKIDQAFSRLSTGCKHRNLFTREEQADAFSAS
YK
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mRNA from alignment at A-nodosum_M_contig1001:221877..222770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1001.7.1 ID=mRNA_A-nodosum_M_contig1001.7.1|Name=mRNA_A-nodosum_M_contig1001.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:221877..222770- (Ascophyllum nodosum dioecious)
CGTAGAATCATCGGCAGCGTCTCCGTTCAGTTCATGCCTGTGGGTCATAC
CCATATTAAGATCGATCAGGCGTTTTCCAGGTGAAATACGTGTACCCTGG
TGCGTGCGGAGAAAGAAGGTTTGTTCATTTGTGTTATCCCTCATTCCTTC
CATTCTGTACACCGTGTCTTCTCTGAACGTGCATCACCTTCGACACGACC
AATCTACCTTTCACCTTGCCCCCGTGTTGCTCAAACACATACCTGGTATA
TGCGTATCCCCCCGATTTGTTGGCACTGCTTTCTGTACGCAAAATATACA
TGTCTGGTGTTCCTTGTCACTCTCTGCGCCGTGTCCCTTCCAACCTTCCT
CTTTTACCTGCATCGTTTGTTTGTCACATCGATAGTCGGACCCGTCCAAT
AAAGTTCATGGAAATGTTTTAAGAGTGTATGGAGGCCGTGTTCGTATCAA
ATTCACAGCGACTTGTCATCGCATCCCCTGCCTCTGTCTTTAATTTTCTC
ACCATACTGTTTTGTTTTTCACGTTTTTCATCCCTTATTCTTGTCTTGCT
TTCGTTGTTTTCCTGCAGGCAACTTTTTTTCTTCCAGTTTGAGTGTGTCG
ACACCTATGTTTGCCCCTAAAATACAAATGCCATTTTCAATCCTAATGCA
AGCACATGGCAATGTGCAACATTCTTGATGGAGTCCAAGCTTGAGTGAAA
ATAGTACCAATACCAGTCAAGCAAACCAGAGGGTCGAGCGCACTCTCTCG
CTGACCTACATCGACTTTTTCCTATTTTTGCGCGTCTGGTTCGTCGCCCG
CTTCTTTTCCACATCAGATTGTCAACAGGCTGCAAGCATCGCAACCTCTT
CACGAGGGAAGAGCAAGCGGACGCCTTTTCAGCGTCTTACAAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1001:221877..222770-

>mRNA_A-nodosum_M_contig1001.7.1 ID=mRNA_A-nodosum_M_contig1001.7.1|Name=mRNA_A-nodosum_M_contig1001.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:221877..222770- (Ascophyllum nodosum dioecious)
CGTAGAATCATCGGCAGCGTCTCCGTTCAGTTCATGCCTGTGGGTCATAC
CCATATTAAGATCGATCAGGCGTTTTCCAGATTGTCAACAGGCTGCAAGC
ATCGCAACCTCTTCACGAGGGAAGAGCAAGCGGACGCCTTTTCAGCGTCT
TACAAG
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