mRNA_A-nodosum_M_contig1001.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1001.5.1
Unique NamemRNA_A-nodosum_M_contig1001.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1001.5.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.320e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 VDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 156
            +D+A L KIQQRYDSVH RL +LYPDDPAKR   IR+MNLSVQLLRE GTK+
Sbjct:  116 IDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKD 167
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BLAST of mRNA_A-nodosum_M_contig1001.5.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 9.280e-14
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 VDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 156
            V++  L KIQQRYDSV  RL +L+PDDPAKR+ I+R+MNLSV+LLRE GTK+
Sbjct:   65 VEQDTLVKIQQRYDSVVPRLEALFPDDPAKRSEIVREMNLSVELLRETGTKD 116
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1001.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE1.320e-1675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI9.280e-1467.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1001contigA-nodosum_M_contig1001:221113..221602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.850965-CDS-A-nodosum_M_contig1001:221114..2211911680866358.850965-CDS-A-nodosum_M_contig1001:221114..221191Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 221115..221191 -
1680866358.8605947-CDS-A-nodosum_M_contig1001:221523..2216021680866358.8605947-CDS-A-nodosum_M_contig1001:221523..221602Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 221524..221602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1001.5.1prot_A-nodosum_M_contig1001.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1001 221115..221602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1001.5.1

>prot_A-nodosum_M_contig1001.5.1 ID=prot_A-nodosum_M_contig1001.5.1|Name=mRNA_A-nodosum_M_contig1001.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=52bp
VDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGT
KE
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mRNA from alignment at A-nodosum_M_contig1001:221113..221602-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1001.5.1 ID=mRNA_A-nodosum_M_contig1001.5.1|Name=mRNA_A-nodosum_M_contig1001.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=490bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:221113..221602- (Ascophyllum nodosum dioecious)
GTTGACGAGGCGATCCTCTCGAAGATTCAGCAACGCTACGACAGCGTGCA
CACCAGGTTGATCTCGCTGTATCCCGATGGTGAGAGATGGTTCCGCTCCT
TCGCTGTAAAGTGCTTGCTGATTCGCTGAATGTAGGTAGGTAACCCTAAC
CCTTGTCATTTCGCTGGTTGTCTGCGCGTTGACCTCCAATTGTTTTGTGT
TTTTTTCGCATGCATGCTCCCCATTCCCTACCGACCGCTGTTATACCACT
GTAGCCAGAGATGCGGTTAGCATATACAGAACATGTGCCAATCTCGACTA
AAGTAGGCATGTCCTTCCTTACCACCCGAGAGTCAATATCCTCCTGCACG
GGCATGTCGTTTTGCCCACTTACACCAATTTTGTTCTTCGTTTCCAATCG
CTTCGGTGCAGACCCTGCTAAAAGAGCTCACATCATACGACAGATGAACC
TCTCCGTCCAACTTTTGCGTGAGAATGGAACGAAGGAGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1001:221113..221602-

>mRNA_A-nodosum_M_contig1001.5.1 ID=mRNA_A-nodosum_M_contig1001.5.1|Name=mRNA_A-nodosum_M_contig1001.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=156bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:221113..221602- (Ascophyllum nodosum dioecious)
GTTGACGAGGCGATCCTCTCGAAGATTCAGCAACGCTACGACAGCGTGCA
CACCAGGTTGATCTCGCTGTATCCCGATGACCCTGCTAAAAGAGCTCACA
TCATACGACAGATGAACCTCTCCGTCCAACTTTTGCGTGAGAATGGAACG
AAGGAG
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