mRNA_A-nodosum_M_contig1001.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1001.12.1
Unique NamemRNA_A-nodosum_M_contig1001.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1001.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1001contigA-nodosum_M_contig1001:223947..224489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.7040627-CDS-A-nodosum_M_contig1001:223946..2240251680866358.7040627-CDS-A-nodosum_M_contig1001:223946..224025Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 223947..224025 +
1680866358.714772-CDS-A-nodosum_M_contig1001:224410..2244631680866358.714772-CDS-A-nodosum_M_contig1001:224410..224463Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1001 224411..224463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.7247162-UTR-A-nodosum_M_contig1001:224463..2244891680866358.7247162-UTR-A-nodosum_M_contig1001:224463..224489Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1001 224464..224489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1001.12.1prot_A-nodosum_M_contig1001.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1001 223947..224463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1001.12.1

>prot_A-nodosum_M_contig1001.12.1 ID=prot_A-nodosum_M_contig1001.12.1|Name=mRNA_A-nodosum_M_contig1001.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=44bp
MEYEGYNRGRGQSITSPRVARRHRLFGASRGPFLKQQGLQGPS*
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mRNA from alignment at A-nodosum_M_contig1001:223947..224489+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1001.12.1 ID=mRNA_A-nodosum_M_contig1001.12.1|Name=mRNA_A-nodosum_M_contig1001.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:223947..224489+ (Ascophyllum nodosum dioecious)
ATGGAATACGAAGGTTATAACCGTGGGAGAGGCCAAAGCATAACATCCCC
GCGGGTTGCTCGACGACATCGTTTATTTGGTTAAGTGCGGTGGGTATAGA
TGAAACGACGCAACGGCCTGGAAGAGGATGACGATTCCGCGAAATTGTGC
GGGATTCCTGGCGTTTTGTTCCATACTGGTATACACTCGCCCAAAGTACA
GATTGGATACAAAGTAGCATTCTCGCCAAGTGACTAGATGCGATAGGAGC
ACAACAACAACGTCTACACCTAATAACTGTACATGCCTCAGCGCAGACAA
AATTTTACAAAGGTGACATCTGTCTTCTTTCACGAGTTTGAGCTACGTTA
CATTTATTGGTGAGGTGTGTGGGACCTACATGCAGTGTTTCTCACAATGC
TCCACTACAAGAATTACGCCACACACAGAGACATGTCACGAATTATCGAC
CGTCGTACCTTTAGGTGCATCACGTGGCCCGTTTTTGAAGCAGCAAGGAT
TACAGGGTCCTTCGTAGCTCTGATGCCCGGCGCCCCGAAGCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1001:223947..224489+

>mRNA_A-nodosum_M_contig1001.12.1 ID=mRNA_A-nodosum_M_contig1001.12.1|Name=mRNA_A-nodosum_M_contig1001.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=132bp|location=Sequence derived from alignment at A-nodosum_M_contig1001:223947..224489+ (Ascophyllum nodosum dioecious)
ATGGAATACGAAGGTTATAACCGTGGGAGAGGCCAAAGCATAACATCCCC
GCGGGTTGCTCGACGACATCGTTTATTTGGTGCATCACGTGGCCCGTTTT
TGAAGCAGCAAGGATTACAGGGTCCTTCGTAG
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