mRNA_A-nodosum_M_contig10009.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10009.1.1
Unique NamemRNA_A-nodosum_M_contig10009.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 8.960e-42
Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 1
Query:    1 DVINNVEECGYDGGDCCECTCK--DTQD-------HSCGENGYSCIDPNSGCTNPLAVQFP---SCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCAD-NHFVCLDPASGCVNPIRALYSNCTGDLAE-------FANGFCQDLNNNEDCGYDGGDCCECTC 459
            D  NN E CGYDGGDCCECTC+  DT D       + CG NG++CIDPN+ C N   +      +C      +GNG CD   NNE C YDGGDCCECTC D+P+  C   + F C+DP + CV+       + T D+ E       F NG+C + NN E+C YDGGDCCECTC
Sbjct:  136 DEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCG-NGFACIDPNAPCVNDDDITLDIVENCDSVA--VGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPCVDE-----DSFTVDMVESCKYPGSFGNGWCDEDNNIEECAYDGGDCCECTC 300          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 6.070e-40
Identity = 78/166 (46.99%), Postives = 102/166 (61.45%), Query Frame = 1
Query:   10 NNVEECGYDGGDCCECTCKDTQDHSCGEN-GYSCIDPNSGCTNPLAVQFPSCTGTIND--MGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCADNH----------FVCLDPASGCVNP---IRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            NN+EECG+DGGDCCECTC+D + ++CG+  GY+CIDP++ C +  AV         +   +GNG CDS LNNE+C YDGGDCCECTC D   Y   D+           F C+DP + CV+       +   C+    +  NG+C D NN+ +C YDGGDCCECTC
Sbjct:  107 NNIEECGFDGGDCCECTCEDGE-YTCGQYYGYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTC-DPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCS--TGQIGNGYCDDSNNSPECAYDGGDCCECTC 268          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.390e-39
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 1
Query:    1 DVINNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAVQFPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCADNHFVCLDPASGCVNP-IRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            D++NN   C YDGGDCCEC+C D  D+ CG  G++C+DP+ G T   A +  +C  +   M +G CDSS N  +C YDGGDCCEC+C D  DY C  N F CLDPA  C +P + A + +C        +GFC    N   CG+DGGDCC C+C
Sbjct:   98 DLVNNHPSCDYDGGDCCECSCIDGPDYGCGSIGFACLDPDCGNTTETAPENTTCEESW--MNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDPA--CFDPALVAEFPDCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSC 247          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.240e-39
Identity = 79/165 (47.88%), Postives = 102/165 (61.82%), Query Frame = 1
Query:   10 NNVEECGYDGGDCCECTCK----DTQDHSCGENGY--SCIDPNSGCTNPLAVQFPSCTGTI-NDMGNGKCDSSLNNENCGYDGGDCCECTCA---DEPDYSCADNH--FVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            NN  ECGYDGGDCCECTC+    D  +  C ++GY  +CIDP++ C +   +        + +D+GNG CD   NNE CGYD GDCCECTC    D+ D+ C+ +   F C+DPA+ CV+       +  NC G +    +G+C D NNNE CGYDGGDCCECTC
Sbjct:   38 NNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.460e-38
Identity = 75/157 (47.77%), Postives = 95/157 (60.51%), Query Frame = 1
Query:   13 NVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAV---QFPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADE--PDYSCADNHFVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            N  EC YDGGDCC CTC++  D       ++CIDP + C N   +    F +C   +N +G+G CD   NNE CGYDGGDCCECTC +E   DY C +  F C+DP++ CVN       +  NC G ++   NG+C   NN E+CGYDGGDCC CTC
Sbjct:  367 NTPECAYDGGDCCACTCQNDVDDDWXXXXFACIDPEAACVNDDDITVDMFVNCEYPVN-VGDGWCDQGNNNEACGYDGGDCCECTCENERDEDYRCME--FSCIDPSAPCVNDDDVTIDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 519          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 3.980e-37
Identity = 75/164 (45.73%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    1 DVINNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAVQFPSCTGT-INDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYS------CADNH-FVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            D INN EECGYDGGDCC CTC D   + CG  G++CIDP++ C +   V   +     +  +G+G+CD   N E C YDGGDCC CTC    D S      C+++  F C+DP + CVN       +   C G    F +G+C D NNN++CGYD GDCC CTC
Sbjct:  190 DQINNNEECGYDGGDCCFCTCLDDF-YECGIRGFACIDPSAECADDDDVTVDTVENCGVRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTVFACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTC 352          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 4.130e-37
Identity = 78/162 (48.15%), Postives = 96/162 (59.26%), Query Frame = 1
Query:   10 NNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCT---NPLAVQFPSCT---GTINDMGNGKCDSSLNNENCGYDGGDCCECTCA----DEPDYSCADNHFVCLDPASGCVNP--IRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            NN E C YDGGDCCECTC D   + CG   ++CIDP++ C    N  A    SC    G +  +GNG C+ + N E C YD GDCC+CTC     D  D+SC D  F C+DP + CV+      ++ +C      F +GFC D NNNE CGYDGGDCCECTC
Sbjct:   83 NNNEVCDYDGGDCCECTCVDAF-YPCGYVAFACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVD--FACVDPNAPCVDDDVTEGMFEDCFN----FGDGFCNDYNNNEQCGYDGGDCCECTC 237          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.920e-36
Identity = 74/163 (45.40%), Postives = 95/163 (58.28%), Query Frame = 1
Query:   13 NVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAV---QFPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCA--------DEPDYSCADNHFVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459
            N  EC YDGGDCC CTC+   D   G   ++CIDP + C +   +    F +C   + D+GNG CD + N E CGYDGGDCCECTC         D+ DY C +  F C+DP++ CV+       +  NC G ++   NG+C   NN E+CGYDGGDCC CTC
Sbjct:  141 NTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDITVDMFENCEYPV-DIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCME--FACIDPSAPCVDDDDITVDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 299          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 2.050e-34
Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 1
Query:   10 NNVEECGYDGGDCCECTC----KDTQDHSCGENGYSCIDPNSGCTNPLAVQ--FPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADE--PDYSCADNHFVCLDPASGCVNPIRALYSNCTGDLAEF-ANGFCQDLNNNEDCGYDGGDCCECTC 459
            NN+EEC YD GDCC+CTC     D  D SC +  ++C+DPN+ C +    +  F  C     + G+G C+   NNE CGYDGGDCCECTC  +   ++ C +  F C+DP + CV+            + E+  +G+C   NN E C YDGGDCCECTC
Sbjct:    5 NNIEECDYDAGDCCQCTCGIESDDLPDFSCVD--FACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTE--FACIDPTAPCVDDDDVTADALENCMMEYLGDGYCDTYNNIEICDYDGGDCCECTC 155          
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.430e-33
Identity = 77/170 (45.29%), Postives = 95/170 (55.88%), Query Frame = 1
Query:   10 NNVEECGYDGGDCCECTCKDTQ--DHS--CGENG--YSCIDPNSGCTNPLAVQFPSCTGT-INDMGNGKCDSSLNNENCGYDGGDCCECTCADEPD-------YSCADNHFVCLDPASGCVNPIRALYSNCTGDLAE------FANGFCQDLNNNEDCGYDGGDCCECTC 459
            NN  ECGYDGGDCCECTC++ Q  DH   C +NG  ++C+DP++ C     V   +       D+G+G CD   NNE CGYDGGDCCECTC    D       Y      F C+DP++ CVN       + T D+ E        +G+C   NNN  C YDGGDCCECTC
Sbjct:   45 NNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVND-----DDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTC 209          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S4_ECTSI8.960e-4247.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI6.070e-4046.99Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G5Y7_ECTSI1.390e-3947.40Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FI87_ECTSI5.240e-3947.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE7.460e-3847.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT4_9PHAE3.980e-3745.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK5_9PHAE4.130e-3748.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI1.920e-3645.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSR3_ECTSI2.050e-3443.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI1.430e-3345.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10009contigA-nodosum_M_contig10009:6727..7185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5Y7
PFAMsBeta_helix,Chlam_PMP
Model size459
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.28e-40
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.6152022-CDS-A-nodosum_M_contig10009:6726..71851680866358.6152022-CDS-A-nodosum_M_contig10009:6726..7185Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10009 6727..7185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10009.1.1prot_A-nodosum_M_contig10009.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10009 6727..7185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10009.1.1

>prot_A-nodosum_M_contig10009.1.1 ID=prot_A-nodosum_M_contig10009.1.1|Name=mRNA_A-nodosum_M_contig10009.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=153bp
DVINNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAVQ
FPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCADNHF
VCLDPASGCVNPIRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCE
CTC
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mRNA from alignment at A-nodosum_M_contig10009:6727..7185-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10009.1.1 ID=mRNA_A-nodosum_M_contig10009.1.1|Name=mRNA_A-nodosum_M_contig10009.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig10009:6727..7185- (Ascophyllum nodosum dioecious)
GACGTAATCAATAATGTCGAAGAATGCGGCTATGATGGGGGAGATTGCTG CGAATGTACATGCAAAGACACCCAAGACCATTCCTGCGGCGAAAACGGCT ACTCTTGTATTGACCCTAACTCGGGTTGTACTAATCCGTTGGCCGTTCAA TTTCCCAGCTGCACAGGAACAATAAATGACATGGGGAACGGGAAATGTGA TTCGTCTCTGAACAACGAGAACTGCGGCTACGATGGTGGAGACTGCTGCG AGTGCACCTGCGCCGATGAGCCAGACTACTCTTGTGCGGATAATCATTTC GTATGTCTGGACCCCGCATCAGGTTGTGTTAACCCGATAAGAGCGCTATA CTCCAACTGTACTGGGGATCTAGCGGAATTCGCAAATGGCTTCTGCCAAG ATTTGAATAATAATGAGGACTGTGGTTACGATGGTGGAGATTGCTGCGAG TGTACATGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10009:6727..7185-

>mRNA_A-nodosum_M_contig10009.1.1 ID=mRNA_A-nodosum_M_contig10009.1.1|Name=mRNA_A-nodosum_M_contig10009.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig10009:6727..7185- (Ascophyllum nodosum dioecious)
GACGTAATCAATAATGTCGAAGAATGCGGCTATGATGGGGGAGATTGCTG
CGAATGTACATGCAAAGACACCCAAGACCATTCCTGCGGCGAAAACGGCT
ACTCTTGTATTGACCCTAACTCGGGTTGTACTAATCCGTTGGCCGTTCAA
TTTCCCAGCTGCACAGGAACAATAAATGACATGGGGAACGGGAAATGTGA
TTCGTCTCTGAACAACGAGAACTGCGGCTACGATGGTGGAGACTGCTGCG
AGTGCACCTGCGCCGATGAGCCAGACTACTCTTGTGCGGATAATCATTTC
GTATGTCTGGACCCCGCATCAGGTTGTGTTAACCCGATAAGAGCGCTATA
CTCCAACTGTACTGGGGATCTAGCGGAATTCGCAAATGGCTTCTGCCAAG
ATTTGAATAATAATGAGGACTGTGGTTACGATGGTGGAGATTGCTGCGAG
TGTACATGT
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