mRNA_A-nodosum_M_contig10009.1.1 (mRNA) Ascophyllum nodosum dioecious
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 150 bits (378), Expect = 8.960e-42 Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 1 Query: 1 DVINNVEECGYDGGDCCECTCK--DTQD-------HSCGENGYSCIDPNSGCTNPLAVQFP---SCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCAD-NHFVCLDPASGCVNPIRALYSNCTGDLAE-------FANGFCQDLNNNEDCGYDGGDCCECTC 459 D NN E CGYDGGDCCECTC+ DT D + CG NG++CIDPN+ C N + +C +GNG CD NNE C YDGGDCCECTC D+P+ C + F C+DP + CV+ + T D+ E F NG+C + NN E+C YDGGDCCECTC Sbjct: 136 DEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQNGCG-NGFACIDPNAPCVNDDDITLDIVENCDSVA--VGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPCVDE-----DSFTVDMVESCKYPGSFGNGWCDEDNNIEECAYDGGDCCECTC 300
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI) HSP 1 Score: 147 bits (371), Expect = 6.070e-40 Identity = 78/166 (46.99%), Postives = 102/166 (61.45%), Query Frame = 1 Query: 10 NNVEECGYDGGDCCECTCKDTQDHSCGEN-GYSCIDPNSGCTNPLAVQFPSCTGTIND--MGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCADNH----------FVCLDPASGCVNP---IRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 NN+EECG+DGGDCCECTC+D + ++CG+ GY+CIDP++ C + AV + +GNG CDS LNNE+C YDGGDCCECTC D Y D+ F C+DP + CV+ + C+ + NG+C D NN+ +C YDGGDCCECTC Sbjct: 107 NNIEECGFDGGDCCECTCEDGE-YTCGQYYGYACIDPDATCVDDDAVTVDMMENCYDPSRIGNGACDSLLNNEDCAYDGGDCCECTC-DPSRYPWYDSGVGCQTGMYGGFACIDPDAPCVDDDIVTAEMMDLCS--TGQIGNGYCDDSNNSPECAYDGGDCCECTC 268
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 151 bits (382), Expect = 1.390e-39 Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 1 Query: 1 DVINNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAVQFPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYSCADNHFVCLDPASGCVNP-IRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 D++NN C YDGGDCCEC+C D D+ CG G++C+DP+ G T A + +C + M +G CDSS N +C YDGGDCCEC+C D DY C N F CLDPA C +P + A + +C +GFC N CG+DGGDCC C+C Sbjct: 98 DLVNNHPSCDYDGGDCCECSCIDGPDYGCGSIGFACLDPDCGNTTETAPENTTCEESW--MNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDPA--CFDPALVAEFPDCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSC 247
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 148 bits (374), Expect = 5.240e-39 Identity = 79/165 (47.88%), Postives = 102/165 (61.82%), Query Frame = 1 Query: 10 NNVEECGYDGGDCCECTCK----DTQDHSCGENGY--SCIDPNSGCTNPLAVQFPSCTGTI-NDMGNGKCDSSLNNENCGYDGGDCCECTCA---DEPDYSCADNH--FVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 NN ECGYDGGDCCECTC+ D + C ++GY +CIDP++ C + + + +D+GNG CD NNE CGYD GDCCECTC D+ D+ C+ + F C+DPA+ CV+ + NC G + +G+C D NNNE CGYDGGDCCECTC Sbjct: 38 NNNAECGYDGGDCCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 146 bits (368), Expect = 7.460e-38 Identity = 75/157 (47.77%), Postives = 95/157 (60.51%), Query Frame = 1 Query: 13 NVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAV---QFPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADE--PDYSCADNHFVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 N EC YDGGDCC CTC++ D ++CIDP + C N + F +C +N +G+G CD NNE CGYDGGDCCECTC +E DY C + F C+DP++ CVN + NC G ++ NG+C NN E+CGYDGGDCC CTC Sbjct: 367 NTPECAYDGGDCCACTCQNDVDDDWXXXXFACIDPEAACVNDDDITVDMFVNCEYPVN-VGDGWCDQGNNNEACGYDGGDCCECTCENERDEDYRCME--FSCIDPSAPCVNDDDVTIDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 519
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 143 bits (361), Expect = 3.980e-37 Identity = 75/164 (45.73%), Postives = 96/164 (58.54%), Query Frame = 1 Query: 1 DVINNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAVQFPSCTGT-INDMGNGKCDSSLNNENCGYDGGDCCECTCADEPDYS------CADNH-FVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 D INN EECGYDGGDCC CTC D + CG G++CIDP++ C + V + + +G+G+CD N E C YDGGDCC CTC D S C+++ F C+DP + CVN + C G F +G+C D NNN++CGYD GDCC CTC Sbjct: 190 DQINNNEECGYDGGDCCFCTCLDDF-YECGIRGFACIDPSAECADDDDVTVDTVENCGVRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTVFACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTC 352
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.130e-37 Identity = 78/162 (48.15%), Postives = 96/162 (59.26%), Query Frame = 1 Query: 10 NNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCT---NPLAVQFPSCT---GTINDMGNGKCDSSLNNENCGYDGGDCCECTCA----DEPDYSCADNHFVCLDPASGCVNP--IRALYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 NN E C YDGGDCCECTC D + CG ++CIDP++ C N A SC G + +GNG C+ + N E C YD GDCC+CTC D D+SC D F C+DP + CV+ ++ +C F +GFC D NNNE CGYDGGDCCECTC Sbjct: 83 NNNEVCDYDGGDCCECTCVDAF-YPCGYVAFACIDPSAACVDDDNITADIAESCHDGGGYVAGLGNGYCNEANNIEECDYDAGDCCQCTCGIESDDLSDFSCVD--FACVDPNAPCVDDDVTEGMFEDCFN----FGDGFCNDYNNNEQCGYDGGDCCECTC 237
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.920e-36 Identity = 74/163 (45.40%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 13 NVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAV---QFPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCA--------DEPDYSCADNHFVCLDPASGCVNPIRA---LYSNCTGDLAEFANGFCQDLNNNEDCGYDGGDCCECTC 459 N EC YDGGDCC CTC+ D G ++CIDP + C + + F +C + D+GNG CD + N E CGYDGGDCCECTC D+ DY C + F C+DP++ CV+ + NC G ++ NG+C NN E+CGYDGGDCC CTC Sbjct: 141 NTPECAYDGGDCCSCTCESPYDDDWGCMWFACIDPEAACVDDDDITVDMFENCEYPV-DIGNGWCDEANNIEACGYDGGDCCECTCEYESPYDWDDDWDYHCME--FACIDPSAPCVDDDDITVDMVENC-GYVSGIGNGWCDRNNNKEECGYDGGDCCSCTC 299
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7FSR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI) HSP 1 Score: 130 bits (327), Expect = 2.050e-34 Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 1 Query: 10 NNVEECGYDGGDCCECTC----KDTQDHSCGENGYSCIDPNSGCTNPLAVQ--FPSCTGTINDMGNGKCDSSLNNENCGYDGGDCCECTCADE--PDYSCADNHFVCLDPASGCVNPIRALYSNCTGDLAEF-ANGFCQDLNNNEDCGYDGGDCCECTC 459 NN+EEC YD GDCC+CTC D D SC + ++C+DPN+ C + + F C + G+G C+ NNE CGYDGGDCCECTC + ++ C + F C+DP + CV+ + E+ +G+C NN E C YDGGDCCECTC Sbjct: 5 NNIEECDYDAGDCCQCTCGIESDDLPDFSCVD--FACVDPNAPCVDDDVTEGMFEDCF----NFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTE--FACIDPTAPCVDDDDVTADALENCMMEYLGDGYCDTYNNIEICDYDGGDCCECTC 155
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.430e-33 Identity = 77/170 (45.29%), Postives = 95/170 (55.88%), Query Frame = 1 Query: 10 NNVEECGYDGGDCCECTCKDTQ--DHS--CGENG--YSCIDPNSGCTNPLAVQFPSCTGT-INDMGNGKCDSSLNNENCGYDGGDCCECTCADEPD-------YSCADNHFVCLDPASGCVNPIRALYSNCTGDLAE------FANGFCQDLNNNEDCGYDGGDCCECTC 459 NN ECGYDGGDCCECTC++ Q DH C +NG ++C+DP++ C V + D+G+G CD NNE CGYDGGDCCECTC D Y F C+DP++ CVN + T D+ E +G+C NNN C YDGGDCCECTC Sbjct: 45 NNNAECGYDGGDCCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACGEGFACIDPSAPCVND-----DDITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTC 209 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10009.1.1 >prot_A-nodosum_M_contig10009.1.1 ID=prot_A-nodosum_M_contig10009.1.1|Name=mRNA_A-nodosum_M_contig10009.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=153bp DVINNVEECGYDGGDCCECTCKDTQDHSCGENGYSCIDPNSGCTNPLAVQback to top mRNA from alignment at A-nodosum_M_contig10009:6727..7185- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10009.1.1 ID=mRNA_A-nodosum_M_contig10009.1.1|Name=mRNA_A-nodosum_M_contig10009.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig10009:6727..7185- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10009:6727..7185- >mRNA_A-nodosum_M_contig10009.1.1 ID=mRNA_A-nodosum_M_contig10009.1.1|Name=mRNA_A-nodosum_M_contig10009.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig10009:6727..7185- (Ascophyllum nodosum dioecious)back to top |