mRNA_A-nodosum_M_contig1000.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1000.1.1
Unique NamemRNA_A-nodosum_M_contig1000.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.870e-18
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            T TRPDI+  V    ++C   + +H  AA+  L Y  RT H GI+    T  G ++  Y D++ AS    RR VS G V  G GA++WFS  Q+   L+++E+EYVAL +VVND
Sbjct: 1123 TQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVND 1236          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.430e-17
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            T TRPDI+  V    ++C   + +H KAA+  L Y  RT  +GI +      G++M  ++D++ AS    RR VS G VM G G +TWFS  Q+   L ++ESEYVA+A+V+ +
Sbjct:  619 TQTRPDIAKAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKE 732          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.270e-16
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            T TRPDI+  V    ++C   + +H KAA+  L Y  RT  +GIA+      G+++  ++D++  S     R VS G V+ G G +TWFS  Q+  AL+++E++YVA+A V+ +
Sbjct:   69 TQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKE 182          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5JC48_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC48_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.460e-15
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            T TRPDI+  V    ++C   + +H  AAM  L    RT H+GI++   T  G ++  Y D++ AS    RR VS G V  G GA++WFS  Q+   L+++E+EYVAL +VV +
Sbjct:  430 TQTRPDIANAV---ARYCASPKLVHWNAAMDILGCARRTSHVGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTETEYVALGDVVKE 540          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15
Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    4 MTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEV 333
            +TRPDI+  V    ++    + +H KAA+  L Y +RT  LGI++   T  G T+ A++D++ AS    RR VS G VM   GAI WFS  Q    L++++SEYVA+A++
Sbjct:  547 LTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADM 656          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: UPI0008FCF67C (uncharacterized protein LOC109116117 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FCF67C)

HSP 1 Score: 76.6 bits (187), Expect = 1.230e-14
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            ++TRPDISF VH  +++    R  H KAA + LRY       G+ Y   +     +SAY DS+ ASCPD RR V+   + LG   I+W +  Q   + +S+ESE+ ALA   ++
Sbjct:   32 SLTRPDISFAVHKLSQYMSHPRTSHLKAAYRVLRYLKMAPAQGLLYSSDSDS--KLSAYSDSDWASCPDSRRSVTGYCIFLGSSLISWRAKKQATVSRSSAESEFRALAHTTSE 143          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: UPI001C7279BC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7279BC)

HSP 1 Score: 76.6 bits (187), Expect = 4.890e-14
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALA 327
            T+TRPDIS+VVH  ++F       H  AA K L+Y   T   GI +   T   + +S Y DS+ ASCPD RR V+   V++G   I+W S  Q V + +S+E+EY A+A
Sbjct:  175 TITRPDISYVVHTLSQFMATPTSAHLAAAHKVLKYIKTTPAQGILFS--TASSLQLSTYCDSDWASCPDTRRSVTGYCVLIGNSLISWKSKKQIVVSHSSAEAEYRAMA 281          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: UPI000901B545 (uncharacterized protein LOC109125407 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901B545)

HSP 1 Score: 74.3 bits (181), Expect = 2.810e-13
Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            T+TRPDI+FVVH+ +++      +H +AAM  L+Y       G+ Y       + ++ + D+N  +CP  RR +S   V LG   I+W S  Q+VA+ +S+ESEY A+A   N+
Sbjct:  197 TITRPDITFVVHHLSQYLSCPTDVHMQAAMHILKYLKNNPGQGLFYSAKDD--ICLNGFADANWGTCPTTRRSISGVCVFLGDSLISWKSKKQKVASQSSTESEYRAMALATNE 308          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6A3I0S1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I0S1_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.750e-13
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   10 RPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGA-ITWFSHAQRVAALASSESEYVALAEVVND 342
            RPDIS  V   ++F ++    H  A +K +RY  +TK +GI Y G+   G  + AY D++ A   D RR VS G +++ CGA + W S  Q+  AL+S+E+EY+A+++ VN+
Sbjct:   84 RPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLL--GTQLEAYSDADWAGNRDDRRSVS-GMLLMLCGAPVVWRSTFQKTVALSSTEAEYMAMSDCVNE 192          
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A3Q7I3X3_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7I3X3_SOLLC)

HSP 1 Score: 73.2 bits (178), Expect = 7.330e-13
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    7 TRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342
            TR DI++ V + ++F    R  H KAA   LRY      LG+         VT+SAY DS+ ASCPD R+ VS   V++G   I+W S  Q   +L+S+E+EY A+ +VV +
Sbjct:  126 TRMDIAYSVQHLSQFMQSPREPHLKAAYHVLRYLQHDPTLGVFINNKPD--VTISAYCDSDWASCPDSRKSVSGYLVLMGDSPISWKSKKQPTVSLSSAEAEYRAIRQVVGE 235          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6V8_9PHAE3.870e-1842.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQN5_9PHAE2.430e-1740.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMV5_9PHAE2.270e-1636.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC48_9PHAE2.460e-1540.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE2.670e-1540.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI0008FCF67C1.230e-1438.60uncharacterized protein LOC109116117 n=1 Tax=Taren... [more]
UPI001C7279BC4.890e-1442.20uncharacterized mitochondrial protein AtMg00810-li... [more]
UPI000901B5452.810e-1336.84uncharacterized protein LOC109125407 n=1 Tax=Camel... [more]
A0A6A3I0S1_9STRA3.750e-1339.29Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A3Q7I3X3_SOLLC7.330e-1340.18Uncharacterized protein n=1 Tax=Solanum lycopersic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1000contigA-nodosum_M_contig1000:209629..209970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size342
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorymitochondrion
Exons1
Evalue7.4e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size255
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.5705807-CDS-A-nodosum_M_contig1000:209628..2098831680866358.5705807-CDS-A-nodosum_M_contig1000:209628..209883Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1000 209629..209883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866358.5804768-UTR-A-nodosum_M_contig1000:209883..2099701680866358.5804768-UTR-A-nodosum_M_contig1000:209883..209970Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1000 209884..209970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1000.1.1prot_A-nodosum_M_contig1000.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1000 209629..209883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1000.1.1

>prot_A-nodosum_M_contig1000.1.1 ID=prot_A-nodosum_M_contig1000.1.1|Name=mRNA_A-nodosum_M_contig1000.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp
MKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAV
MLGCGAITWFSHAQRVAALASSESEYVALAEVVND
back to top

mRNA from alignment at A-nodosum_M_contig1000:209629..209970-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1000.1.1 ID=mRNA_A-nodosum_M_contig1000.1.1|Name=mRNA_A-nodosum_M_contig1000.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1000:209629..209970- (Ascophyllum nodosum dioecious)
ACCATGACTAGACCAGATATCTCGTTCGTGGTACATAACCGGACCAAGTT CTGCGACGATCTGAGACCACTACATTAGAAGGCGGCGATGAAGGCGCTAC GATACTACTGGCGGACGAAGCACCTCGGTATCGCCTACGGCGGAGTTACG CCAAGGGGTGTGACGATGTCAGCATACATCGACTCCAACGACGCATCATG CCCGGACCATAGACGTTTTGTCTCAGATGGGGCAGTCATGCTGGGATGTG GTGCAATTACCTGGTTCTCACACGCACAGAGGGTAGCAGCGTTGGCGTCA TCCGAGTCGGAGTATGTGGCGCTTGCGGAAGTCGTAAATGAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1000:209629..209970-

>mRNA_A-nodosum_M_contig1000.1.1 ID=mRNA_A-nodosum_M_contig1000.1.1|Name=mRNA_A-nodosum_M_contig1000.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig1000:209629..209970- (Ascophyllum nodosum dioecious)
ATGAAGGCGCTACGATACTACTGGCGGACGAAGCACCTCGGTATCGCCTA
CGGCGGAGTTACGCCAAGGGGTGTGACGATGTCAGCATACATCGACTCCA
ACGACGCATCATGCCCGGACCATAGACGTTTTGTCTCAGATGGGGCAGTC
ATGCTGGGATGTGGTGCAATTACCTGGTTCTCACACGCACAGAGGGTAGC
AGCGTTGGCGTCATCCGAGTCGGAGTATGTGGCGCTTGCGGAAGTCGTAA
ATGAC
back to top