mRNA_A-nodosum_M_contig1000.1.1 (mRNA) Ascophyllum nodosum dioecious
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 3.870e-18 Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 T TRPDI+ V ++C + +H AA+ L Y RT H GI+ T G ++ Y D++ AS RR VS G V G GA++WFS Q+ L+++E+EYVAL +VVND Sbjct: 1123 TQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVND 1236
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.430e-17 Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 T TRPDI+ V ++C + +H KAA+ L Y RT +GI + G++M ++D++ AS RR VS G VM G G +TWFS Q+ L ++ESEYVA+A+V+ + Sbjct: 619 TQTRPDIAKAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKE 732
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 2.270e-16 Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 T TRPDI+ V ++C + +H KAA+ L Y RT +GIA+ G+++ ++D++ S R VS G V+ G G +TWFS Q+ AL+++E++YVA+A V+ + Sbjct: 69 TQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADYTSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKE 182
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5JC48_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC48_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.460e-15 Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 T TRPDI+ V ++C + +H AAM L RT H+GI++ T G ++ Y D++ AS RR VS G V G GA++WFS Q+ L+++E+EYVAL +VV + Sbjct: 430 TQTRPDIANAV---ARYCASPKLVHWNAAMDILGCARRTSHVGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTETEYVALGDVVKE 540
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.670e-15 Identity = 45/110 (40.91%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 4 MTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEV 333 +TRPDI+ V ++ + +H KAA+ L Y +RT LGI++ T G T+ A++D++ AS RR VS G VM GAI WFS Q L++++SEYVA+A++ Sbjct: 547 LTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADM 656
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: UPI0008FCF67C (uncharacterized protein LOC109116117 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI0008FCF67C) HSP 1 Score: 76.6 bits (187), Expect = 1.230e-14 Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 ++TRPDISF VH +++ R H KAA + LRY G+ Y + +SAY DS+ ASCPD RR V+ + LG I+W + Q + +S+ESE+ ALA ++ Sbjct: 32 SLTRPDISFAVHKLSQYMSHPRTSHLKAAYRVLRYLKMAPAQGLLYSSDSDS--KLSAYSDSDWASCPDSRRSVTGYCIFLGSSLISWRAKKQATVSRSSAESEFRALAHTTSE 143
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: UPI001C7279BC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C7279BC) HSP 1 Score: 76.6 bits (187), Expect = 4.890e-14 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALA 327 T+TRPDIS+VVH ++F H AA K L+Y T GI + T + +S Y DS+ ASCPD RR V+ V++G I+W S Q V + +S+E+EY A+A Sbjct: 175 TITRPDISYVVHTLSQFMATPTSAHLAAAHKVLKYIKTTPAQGILFS--TASSLQLSTYCDSDWASCPDTRRSVTGYCVLIGNSLISWKSKKQIVVSHSSAEAEYRAMA 281
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: UPI000901B545 (uncharacterized protein LOC109125407 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901B545) HSP 1 Score: 74.3 bits (181), Expect = 2.810e-13 Identity = 42/114 (36.84%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 1 TMTRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 T+TRPDI+FVVH+ +++ +H +AAM L+Y G+ Y + ++ + D+N +CP RR +S V LG I+W S Q+VA+ +S+ESEY A+A N+ Sbjct: 197 TITRPDITFVVHHLSQYLSCPTDVHMQAAMHILKYLKNNPGQGLFYSAKDD--ICLNGFADANWGTCPTTRRSISGVCVFLGDSLISWKSKKQKVASQSSTESEYRAMALATNE 308
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A6A3I0S1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I0S1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.750e-13 Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1 Query: 10 RPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGA-ITWFSHAQRVAALASSESEYVALAEVVND 342 RPDIS V ++F ++ H A +K +RY +TK +GI Y G+ G + AY D++ A D RR VS G +++ CGA + W S Q+ AL+S+E+EY+A+++ VN+ Sbjct: 84 RPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLL--GTQLEAYSDADWAGNRDDRRSVS-GMLLMLCGAPVVWRSTFQKTVALSSTEAEYMAMSDCVNE 192
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Match: A0A3Q7I3X3_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7I3X3_SOLLC) HSP 1 Score: 73.2 bits (178), Expect = 7.330e-13 Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 7 TRPDISFVVHNRTKFCDDLRPLH*KAAMKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVMLGCGAITWFSHAQRVAALASSESEYVALAEVVND 342 TR DI++ V + ++F R H KAA LRY LG+ VT+SAY DS+ ASCPD R+ VS V++G I+W S Q +L+S+E+EY A+ +VV + Sbjct: 126 TRMDIAYSVQHLSQFMQSPREPHLKAAYHVLRYLQHDPTLGVFINNKPD--VTISAYCDSDWASCPDSRKSVSGYLVLMGDSPISWKSKKQPTVSLSSAEAEYRAIRQVVGE 235 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1000.1.1 >prot_A-nodosum_M_contig1000.1.1 ID=prot_A-nodosum_M_contig1000.1.1|Name=mRNA_A-nodosum_M_contig1000.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=85bp MKALRYYWRTKHLGIAYGGVTPRGVTMSAYIDSNDASCPDHRRFVSDGAVback to top mRNA from alignment at A-nodosum_M_contig1000:209629..209970- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1000.1.1 ID=mRNA_A-nodosum_M_contig1000.1.1|Name=mRNA_A-nodosum_M_contig1000.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1000:209629..209970- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1000:209629..209970- >mRNA_A-nodosum_M_contig1000.1.1 ID=mRNA_A-nodosum_M_contig1000.1.1|Name=mRNA_A-nodosum_M_contig1000.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=255bp|location=Sequence derived from alignment at A-nodosum_M_contig1000:209629..209970- (Ascophyllum nodosum dioecious)back to top |