mRNA_A-nodosum_M_contig100.9.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.210e-52 Identity = 111/252 (44.05%), Postives = 151/252 (59.92%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR+G+ +I GYV+ SG G + G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + DHL+++MDANARTG R GG D +V G YG+D +N+NG RL A++ + S+ N +F TPK GG F K ++RLD+IL+RQ DRR VRN++V SDH LV ++R R APNR Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE) HSP 1 Score: 179 bits (454), Expect = 5.460e-51 Identity = 109/252 (43.25%), Postives = 150/252 (59.52%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR+G+ ++ GYV+ SG G + G+ GVG+A++E++ ++G G E I+ RL+KVR+ TF+VGYAPTET T K FW L + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A+ +LS+ N +F TPK GG F K ++RLD+IL+RQ DRR VRN++V SDH LV ++R R APNR Sbjct: 12 CDVIGLQETRREGQGSLAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 182 bits (462), Expect = 3.990e-50 Identity = 110/252 (43.65%), Postives = 152/252 (60.32%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR G+ +I GYV+ SG G + G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A++ +LS+ N +F TPK GG F K ++RLD+I +RQ DRR VRN++V SDH+LV ++R R APNR Sbjct: 209 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRLPPRVAPNR 454
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 185 bits (470), Expect = 6.610e-50 Identity = 114/256 (44.53%), Postives = 152/256 (59.38%), Query Frame = 1 Query: 10 AKYECDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 A +CD I LQETRR G+ I GYV+ SG G + G+ GVG+A++E++ ++G G E IS RL+KVR+ TF+VGYAPTETA K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL AA+ +LS++N +F TPK G + KE HR LD+IL+RQ DRRLVRN +V SDH LV ++R R APNR Sbjct: 8 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNR 257
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 185 bits (470), Expect = 6.910e-50 Identity = 114/256 (44.53%), Postives = 152/256 (59.38%), Query Frame = 1 Query: 10 AKYECDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 A +CD I LQETRR G+ I GYV+ SG G + G+ GVG+A++E++ ++G G E IS RL+KVR+ TF+VGYAPTETA K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL AA+ +LS++N +F TPK G + KE HR LD+IL+RQ DRRLVRN +V SDH LV ++R R APNR Sbjct: 120 AATDCDVIGLQETRRAGQGAITHD--GYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNR 369
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE) HSP 1 Score: 184 bits (468), Expect = 7.050e-50 Identity = 111/252 (44.05%), Postives = 153/252 (60.71%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR+G+ +I GYV+ SG G + G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+VGYAPTET T K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A++ +LS+ N +F TPK GG F K ++RLD+IL+RQ DRR VRN++V SDH LV ++R R APNR Sbjct: 12 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 7.630e-50 Identity = 107/252 (42.46%), Postives = 152/252 (60.32%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD LQETRR+G+ +I GYV+ SG G + G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF++GYAPTET T K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A++ +LS+ N +F TPK G + KE ++RLD+IL+RQ DRR VR+++V SDH LV ++R R APNR Sbjct: 12 CDVTGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKE--KYRLDFILMRQTDRRFVRDVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 257
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 177 bits (450), Expect = 2.330e-49 Identity = 108/252 (42.86%), Postives = 149/252 (59.13%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR G+ +I GYV+ SG G + G+ GVG+ ++E++ ++G +G E I RL+KVR+ F+VGYAPTET T K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A++ +LS+ N +F TPK GG F K ++RLD+IL+RQ DRR VRN++V SDH LV ++R R APNR Sbjct: 115 CDVIGLQETRRAGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 360
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.400e-48 Identity = 110/252 (43.65%), Postives = 152/252 (60.32%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAATYH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR+G+ +I GYV+ SG G + G+ GVG+A++E++ ++G +G E IS RL+KVR+ TF+V YAPTET T K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A++ +LS+ N +F TPK GG F K ++RLD+IL+RQ DRR VRN++V SDH LV ++R R APNR Sbjct: 691 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQSSN-KGKEKYRLDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRLPPRVAPNR 936
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 180 bits (456), Expect = 3.400e-48 Identity = 110/252 (43.65%), Postives = 150/252 (59.52%), Query Frame = 1 Query: 22 CDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGVGLAVRESIVRALGPDGIVPEHISARLLKVRVIFKHRTATTFIVGYAPTETAA------TYHKSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGGGLGDVRVFGPYGKDTLNDNGSRLLACAAECKLSIVNIFFSTPKRGGNSDAFTYEGPKESHRWRLDYILVRQHDRRLVRNITVHPK--MKSDHRLVSASIRQLGRNAPNR 753 CD I LQETRR+G+ +I GYV+ SG G + G GVG+A++E++ +G +G E IS RL+KVR+ TF+VGYAPTET K FW L + + EV + DHL+++MDANARTG R +G D ++ G YG+D +N+NG RLL A++ +LS+ N +F TPK GG F K ++RLD+IL+RQ DRR VRN++V SDH LV ++R R APNR Sbjct: 189 CDVIGLQETRREGQGSIAHD--GYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDG--CCDAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRLRPRVAPNR 434 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig100.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig100.9.1 >prot_A-nodosum_M_contig100.9.1 ID=prot_A-nodosum_M_contig100.9.1|Name=mRNA_A-nodosum_M_contig100.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=251bp MFAAKYECDFIALQETRRDGRTTIQAPAAGYVVHCSGHCDGDGGEPGILGback to top mRNA from alignment at A-nodosum_M_contig100:141711..142463- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig100.9.1 ID=mRNA_A-nodosum_M_contig100.9.1|Name=mRNA_A-nodosum_M_contig100.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at A-nodosum_M_contig100:141711..142463- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig100:141711..142463- >mRNA_A-nodosum_M_contig100.9.1 ID=mRNA_A-nodosum_M_contig100.9.1|Name=mRNA_A-nodosum_M_contig100.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=753bp|location=Sequence derived from alignment at A-nodosum_M_contig100:141711..142463- (Ascophyllum nodosum dioecious)back to top |