mRNA_A-nodosum_M_contig100.4.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_A-nodosum_M_contig100.4.3
Unique Name	mRNA_A-nodosum_M_contig100.4.3
Type	mRNA
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig100.4.3 vs. uniprot
Match: A0A6H5L7J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7J5_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.640e-5
Identity = 24/35 (68.57%), Postives = 27/35 (77.14%), Query Frame = 1

Query: 1270 SVVPSPAPAAKGFDMSLFQKPGEWKCETCLVKNPP 1374
            S   S AP A GFDMS F+KPGEWKC+ CLV+NPP
Sbjct: 2553 SASTSTAPTAGGFDMSKFRKPGEWKCDACLVRNPP 2587

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig100.4.3 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig100.4.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5L7J5_9PHAE	5.640e-5	68.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig100	contig	A-nodosum_M_contig100:75358..77461 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7FVB0
PFAMs	NUP50,Ran_BP1
Model size	1583
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15304,ko:K17302,ko:K20282
KEGG Pathway	ko05166,map05166
Hectar predicted targeting category	other localisation
GOs	GO:0000054,GO:0000056,GO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006403,GO:0006405,GO:0006508,GO:0006511,GO:0006606,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0022613,GO:0030163,GO:0031267,GO:0031323,GO:0031326,GO:0031503,GO:0031935,GO:0031938,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0042254,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060968,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1903047,GO:1903506,GO:2000112,GO:2001141
Exons	2
Evalue	2.87e-08
EggNOG OGs	COG5171@1\|root,KOG0864@2759\|Eukaryota
Description	Ran GTPase binding
Cds size	1581
COG category	U
BRITE	ko00000,ko00001,ko04131,ko04147

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680866355.0337286-CDS-A-nodosum_M_contig100:75357..76080	1680866355.0337286-CDS-A-nodosum_M_contig100:75357..76080	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig100 75358..76080 -
1680866355.0438-CDS-A-nodosum_M_contig100:76603..77461	1680866355.0438-CDS-A-nodosum_M_contig100:76603..77461	Ascophyllum nodosum dioecious	CDS	A-nodosum_M_contig100 76604..77461 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig100.4.3	prot_A-nodosum_M_contig100.4.3	Ascophyllum nodosum dioecious	polypeptide	A-nodosum_M_contig100 75358..77461 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig100:75358..77461-
coding sequence from alignment at A-nodosum_M_contig100:75358..77461-

protein sequence of mRNA_A-nodosum_M_contig100.4.3

>prot_A-nodosum_M_contig100.4.3 ID=prot_A-nodosum_M_contig100.4.3|Name=mRNA_A-nodosum_M_contig100.4.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=527bp
MGRRVFSGEVPSRPARPHVTGKGLAGSAFRAVPGRHGVGIIGAKRPASKE
LDRESTWGRSVRPRTALSAALQSNPAPPGRKGSTTSIPPPSEGSPDVGPR
RTRGGETITRGGGVCGKSPPRNTRDSTTTTSPAALRFRLRDFTPQRKPRS
SFGESSRRGGGSVALVAWRKPLTSNDAVSGAGDSKERGVRGSRRSRVGRP
GPKKRYILGAALPGSEGVNVATAPRKPVGVGALTRAKAEVVSILHSVIHQ
GAKTSDVTEQLRQEELGRAACQRQADKQGQAQLQTQFGDVTSAEGEKESC
AEFGFPGRTTGRRATFAATSVARLTAITFVRPVPAKRSRASRNQNVHVKA
PVPADEDSLGVFEFGSGQPPSGRLMRRSPRKVVNYLESFAVPPVEPLEVL
GSSAGDSHELRGAAGDSCSRGHSSVVPSPAPAAKGFDMSLFQKPGEWKCE
TCLVKNPPGGDKCVSCETSKPGGATAASGSESSGFFAGSTVGGALFASSA
TVVPSPAPAAKGFDMSLFQKPGEWKCE

mRNA from alignment at A-nodosum_M_contig100:75358..77461-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig100.4.3 ID=mRNA_A-nodosum_M_contig100.4.3|Name=mRNA_A-nodosum_M_contig100.4.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2104bp|location=Sequence derived from alignment at A-nodosum_M_contig100:75358..77461- (Ascophyllum nodosum dioecious)
ATGGGGCGCAGGGTTTTTTCTGGAGAAGTACCTTCACGCCCCGCACGCCC
CCATGTCACCGGTAAAGGCTTAGCAGGTTCTGCATTCCGTGCAGTGCCGG
GCCGCCACGGGGTAGGGATTATTGGCGCCAAGCGACCGGCGTCTAAAGAG
CTGGACAGAGAAAGTACGTGGGGCAGGTCTGTGCGCCCCCGCACGGCGCT
ATCTGCTGCCCTACAGTCCAACCCTGCCCCCCCGGGTAGAAAAGGATCGA
CCACGTCGATTCCACCGCCTTCGGAAGGCTCACCGGATGTTGGCCCTAGG
CGTACCCGCGGCGGTGAAACAATTACCCGTGGTGGTGGTGTTTGCGGGAA
ATCGCCGCCGCGAAACACGCGGGATAGCACCACCACCACCAGCCCTGCGG
CATTGCGCTTCAGACTTCGGGACTTCACTCCCCAGAGAAAGCCGAGGTCT
TCGTTCGGGGAGTCAAGCCGCCGAGGTGGCGGTAGTGTTGCGTTGGTCGC
GTGGCGGAAGCCCCTCACGAGTAATGACGCCGTTTCTGGCGCTGGTGATT
CAAAAGAAAGAGGCGTTCGGGGTTCAAGACGGTCGCGGGTGGGACGGCCG
GGACCCAAGAAACGGTACATCCTAGGGGCGGCATTGCCAGGGTCAGAGGG
CGTGAATGTGGCGACAGCGCCGAGGAAACCCGTGGGAGTGGGGGCATTAA
CCAGAGCGAAGGCTGAAGTGGTAAGCATTCTTCATTCGGTGATCCACCAG
GGGGCGAAGACGTCTGATGTGACGGAACAACTTCGGCAGGAAGAGTTGGG
CAGGGCTGCCTGCCAACGTCAGGCGGATAAGCAGGGGCAGGCACAACTTC
AGACTCAGGTTACCACTGCGACGGAACAAGTTGGAGTTTCGTGCTCTTGA
TTGTAGGTGTTTTTGTGTACAGTTGGATAGACTGCTTTTAGATCGCTTAT
AGGGTATATTGGTTACAATGACCTTGGTGGATGAACTGCGATAAAGGGCA
CCGTAGCCACCGTTTACCGCTGTAGACCGACGAGACTGATAACCGTTGAA
CAGCTATTAGCAAACTACGTTGCTATCCTCGAGAAATCAATTTTATGACA
TTTTACGAATCAAAGTACGAATGTAAGAAGAGATTGCCCTTACGACTGAT
GGAGTATCTAAAAAGCGTGCCTCATTCGACGTTCGTTTGTTTGCGGAGAG
ATTTGGACGTTTTGAGGCTCTTTCTTTTATCCAACGCCTGAATCATAACC
TGTTTCCTGCTGCTCATCGCCCTGTCGCATAACTCTCGTCAATCCTCAAG
CCCGTGACCCGCTCAATACCGCCAACCCTCCCGCACCCTGACTGGATATT
ATTTTGTAACTATCGGAATCGGTCACGACAGTTTGGCGACGTTACCAGCG
CTGAAGGCGAGAAGGAATCCTGCGCAGAGTTTGGTTTCCCCGGTCGTACG
ACGGGCAGGAGGGCGACCTTCGCCGCCACTTCTGTCGCACGCCTGACGGC
GATCACTTTCGTGCGCCCGGTCCCAGCCAAGCGCAGCCGAGCCAGTCGTA
ACCAGAACGTTCACGTGAAGGCACCTGTCCCTGCTGACGAAGACTCTCTC
GGGGTTTTCGAGTTCGGAAGCGGTCAACCCCCGTCGGGTCGCCTGATGCG
GCGCAGTCCAAGAAAGGTGGTCAACTATTTAGAGTCGTTCGCAGTTCCTC
CGGTGGAACCACTGGAGGTCCTAGGTTCGAGCGCCGGTGACAGCCACGAG
CTGAGAGGCGCCGCAGGAGACTCTTGTTCACGTGGTCACTCTTCTGTCGT
ACCTTCGCCAGCGCCGGCAGCCAAAGGTTTCGATATGTCTCTTTTTCAGA
AGCCCGGCGAGTGGAAGTGTGAAACTTGTCTGGTCAAAAACCCGCCGGGA
GGGGACAAGTGTGTTTCATGCGAGACCTCAAAGCCTGGAGGTGCTACTGC
TGCGTCAGGCTCCGAGTCGTCGGGATTTTTCGCAGGCTCTACCGTGGGGG
GCGCGCTTTTTGCCTCGAGCGCGACAGTCGTACCTTCGCCAGCGCCGGCA
GCCAAAGGTTTCGATATGTCTCTTTTTCAGAAGCCCGGCGAGTGGAAGTG
TGAA

Coding sequence (CDS) from alignment at A-nodosum_M_contig100:75358..77461-

>mRNA_A-nodosum_M_contig100.4.3 ID=mRNA_A-nodosum_M_contig100.4.3|Name=mRNA_A-nodosum_M_contig100.4.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=1581bp|location=Sequence derived from alignment at A-nodosum_M_contig100:75358..77461- (Ascophyllum nodosum dioecious)
ATGGGGCGCAGGGTTTTTTCTGGAGAAGTACCTTCACGCCCCGCACGCCC
CCATGTCACCGGTAAAGGCTTAGCAGGTTCTGCATTCCGTGCAGTGCCGG
GCCGCCACGGGGTAGGGATTATTGGCGCCAAGCGACCGGCGTCTAAAGAG
CTGGACAGAGAAAGTACGTGGGGCAGGTCTGTGCGCCCCCGCACGGCGCT
ATCTGCTGCCCTACAGTCCAACCCTGCCCCCCCGGGTAGAAAAGGATCGA
CCACGTCGATTCCACCGCCTTCGGAAGGCTCACCGGATGTTGGCCCTAGG
CGTACCCGCGGCGGTGAAACAATTACCCGTGGTGGTGGTGTTTGCGGGAA
ATCGCCGCCGCGAAACACGCGGGATAGCACCACCACCACCAGCCCTGCGG
CATTGCGCTTCAGACTTCGGGACTTCACTCCCCAGAGAAAGCCGAGGTCT
TCGTTCGGGGAGTCAAGCCGCCGAGGTGGCGGTAGTGTTGCGTTGGTCGC
GTGGCGGAAGCCCCTCACGAGTAATGACGCCGTTTCTGGCGCTGGTGATT
CAAAAGAAAGAGGCGTTCGGGGTTCAAGACGGTCGCGGGTGGGACGGCCG
GGACCCAAGAAACGGTACATCCTAGGGGCGGCATTGCCAGGGTCAGAGGG
CGTGAATGTGGCGACAGCGCCGAGGAAACCCGTGGGAGTGGGGGCATTAA
CCAGAGCGAAGGCTGAAGTGGTAAGCATTCTTCATTCGGTGATCCACCAG
GGGGCGAAGACGTCTGATGTGACGGAACAACTTCGGCAGGAAGAGTTGGG
CAGGGCTGCCTGCCAACGTCAGGCGGATAAGCAGGGGCAGGCACAACTTC
AGACTCAGTTTGGCGACGTTACCAGCGCTGAAGGCGAGAAGGAATCCTGC
GCAGAGTTTGGTTTCCCCGGTCGTACGACGGGCAGGAGGGCGACCTTCGC
CGCCACTTCTGTCGCACGCCTGACGGCGATCACTTTCGTGCGCCCGGTCC
CAGCCAAGCGCAGCCGAGCCAGTCGTAACCAGAACGTTCACGTGAAGGCA
CCTGTCCCTGCTGACGAAGACTCTCTCGGGGTTTTCGAGTTCGGAAGCGG
TCAACCCCCGTCGGGTCGCCTGATGCGGCGCAGTCCAAGAAAGGTGGTCA
ACTATTTAGAGTCGTTCGCAGTTCCTCCGGTGGAACCACTGGAGGTCCTA
GGTTCGAGCGCCGGTGACAGCCACGAGCTGAGAGGCGCCGCAGGAGACTC
TTGTTCACGTGGTCACTCTTCTGTCGTACCTTCGCCAGCGCCGGCAGCCA
AAGGTTTCGATATGTCTCTTTTTCAGAAGCCCGGCGAGTGGAAGTGTGAA
ACTTGTCTGGTCAAAAACCCGCCGGGAGGGGACAAGTGTGTTTCATGCGA
GACCTCAAAGCCTGGAGGTGCTACTGCTGCGTCAGGCTCCGAGTCGTCGG
GATTTTTCGCAGGCTCTACCGTGGGGGGCGCGCTTTTTGCCTCGAGCGCG
ACAGTCGTACCTTCGCCAGCGCCGGCAGCCAAAGGTTTCGATATGTCTCT
TTTTCAGAAGCCCGGCGAGTGGAAGTGTGAA