mRNA_A-nodosum_M_contig100.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig100.1.1
Unique NamemRNA_A-nodosum_M_contig100.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: O65147_SOYBN (Gag-pol polyprotein n=7 Tax=Glycine max TaxID=3847 RepID=O65147_SOYBN)

HSP 1 Score: 179 bits (455), Expect = 2.540e-45
Identity = 148/464 (31.90%), Postives = 217/464 (46.77%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEFEG-ELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHL----IPSGIVGDLRRYKPEHKLAPRRAKCIMLGIDTNYPRRTFRVRDLTTGQVIMRQAIIWHPTADAGEA-VSSDTATKGGGTRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEK------TRPTTRSGRDAASRQTPMRAVDVNHLPPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E L +D  GP  V SLG  RYA + VDDF+RF ++ F++ K D  +   EL           I  +R+D G EFE  +        GI  E +   TPQ NG+VER    L++    +L   A      LWAEAMN AC I NR T     P  + YE+W G +PT  H      P  I+ D  + +   K+ P+    I LG  TN   R +RV +  T  V+    ++      A +  V  D  T G        S    + S   S+    N N    R  +  +   +M+P++       R  T   R+    +    +  V+ + P+         F     W  A + E++     +VWE+VPRP+G  V+GTK IFK K  ++G I + K RLVAQG+ QI+G   DE+ +P     +IR++LG+A +  ++L Q+D   A+L   + EE Y+E P
Sbjct:  727 ELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH--AKELPYNLWAEAMNTACYIHNRVTLRRGTP-TTLYEIWKGRKPTVKHFHICGSPCYILADREQRR---KMDPKSDAGIFLGYSTNS--RAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSAENAENS--DSATDEPNINQPDKRPSIRIQ---KMHPKELIIGDPNRGVTTRSREI---EIISNSCFVSKIEPKNVKEALTDEF-----WINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQP 1169          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A2K3MPV4_TRIPR (Gag-protease polyprotein n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3MPV4_TRIPR)

HSP 1 Score: 177 bits (449), Expect = 1.490e-44
Identity = 145/480 (30.21%), Postives = 219/480 (45.62%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEFEG-ELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCT-----TTSLNPGVSPYELWVGHRPTFDHLIPSG----IVGDLRRYKPEHKLAPRRAKCIMLGIDTNYPRRTFRVRDLTTGQVIMRQAIIWH------------------PTADAGEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHLPPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E L +   GP  V SLGG RYA + VDDF+RF +I F K K ++ +   EL  +        I  +R D G EFE           GIK E + P TPQ NGVVER    +++    +L   A       WAEAMN AC I NR T     TT+L      YELW G +PT  H    G    I+ D    +   K+ P+  + I LG  TN   R +RV ++ +  ++    ++                    PT+DA   V SD+  +         +P P   +   S    +N       G          NP +   T R+     +      +  V+ + P+         F     W  A + E++     +VW++VPRP G  V+GTK +++ K  ++G + + K RLVAQG+ Q++G   DE+ +P     +IR++LGI+ +  ++L Q+D   A+L   ++EE+Y+E P
Sbjct:  778 ELLHMHLMGPMQVESLGGKRYAFVMVDDFSRFTWIEFFKEKSESFEAFKELCLQLQREKNTVIIRIRNDHGKEFENASFLDFCASEGIKHEFSTPITPQQNGVVERKNRTIQESARVMLH--AKHLPYHFWAEAMNTACYIHNRVTLRTGTTTTL------YELWKGRKPTVKHFHVFGSTCYILNDREHRR---KMDPKSEEGIFLGYSTNS--RAYRVYNIRSKVIMESINVVIDDSTTDRTSDDEEDVATSLPTSDAAAEVESDSDDEA-------TNPTPSPVNKVPSIKIQKNHPKDLIIG----------NPNQGIATRRTNEAVTN------SCFVSKVEPKNVKEALIDEF-----WIEAMQDELNQFRRSEVWDLVPRPDGVNVIGTKWVYRNKSDENGIVTRNKARLVAQGYTQVEGLDFDETFAPVARLESIRLLLGISCILKFKLYQMDVKSAFLNGYLQEEVYVEQP 1216          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 175 bits (444), Expect = 3.500e-44
Identity = 135/466 (28.97%), Postives = 225/466 (48.28%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGE-FEGELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGIVGDLRRYKPEHKLAPRRAKCIMLGIDTNYPRRT--FRVRDLTTGQV-IMRQAIIWHPTADAGEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASR--QTPMRAVDVNHL--------PPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E +  D  GP +  + GG+ Y +  +DD +R+ ++  +KHK ++ ++  E   E     G  I  +R+D GGE F  E +  LK+ GI  + TPP TPQ+NGV ER    L D   +++       S   W  A+  A  + NR  T S+ P  +PYELW G +P+ +H+   G    +R+   + KL PR  +C+ +G    YP+ +  F   + +  +V + R AI         E+ +  T  +         + RP                       V  E+ +      T P+       ++R  + P+R   +N +          +  T ++A       +W++A +SEMD     QVW +V +P+G   +G K I+KRK+G  G+++  K RLVA+G+ Q  G  ++E+ SP     +IR++L IAA  D+E+ Q+D   A+L  N++EE+Y++ P
Sbjct:   18 ELIHTDVCGPLTHMARGGFFYFITFIDDHSRYGYLYLMKHKSESFEKFKEFRNEVEKQTGKCIKILRSDRGGEYFLDEFKDYLKDNGIISQLTPPGTPQHNGVAERRNRTLLDMVRSMMSMSELPVS--FWGYALETAIYLLNRVPTKSV-PN-TPYELWTGKKPSLNHIKIWGCPSHVRKSNVD-KLGPRSDRCLFVG----YPKMSTGFYFYNPSEQKVFVSRNAIFLEEDYSLNESRTKVTLEE--------QNDRPMT---------------------VPSENNEEQVIVPTEPSNMQEPRRSTRIIRPPVRLTLLNEIYQMESDGFDNDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQP 445          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A2N9HEI5_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HEI5_FAGSY)

HSP 1 Score: 172 bits (437), Expect = 5.280e-43
Identity = 138/464 (29.74%), Postives = 227/464 (48.92%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGE-FEGELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGIVGDLRRYKPEHKLAPRRAKCIMLGIDTNYPRRT--FRVRDLTTGQV-IMRQAIIWHPTADAGEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHL--------PPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E +  D  GP +  + GG+ Y +  +DD +R+ ++  +KHK ++ ++  E   E     G  I  +R+D GGE F  E +  LK+ GI  + TPP TPQ+NGV ER    L D   +++       S   W  A+  A  + NR  T S+ P  +PYELW   +P+ +H+   G    +R+   + KL PR  +C+ +G    YP+ +  F   + +  +V + R AI         E+ +  T  +         + RP        ++ S N         V  E     N ++ R +TR  R       P+R   +N +          +  T ++A       +W++A +SEMD     QVW +V +P+G   +G K I+KRK+G  G+++  K RLVA+G+ Q  G  ++E+ SP     +IR++L IAA  D+E+ Q+D   A+L  N++EE+Y++ P
Sbjct:  413 ELIHTDVCGPLTHMARGGFFYFITFIDDHSRYGYLYLMKHKSESFEKFKEFRNEVEKQTGKCIKILRSDRGGEYFLDEFKDYLKDNGIISQPTPPGTPQHNGVAERRNRTLLDMVRSMMSMSELPVS--FWGYALETAIYLLNRVPTKSV-PN-TPYELWTSKKPSLNHIKIWGCPSHVRKSNVD-KLGPRSDRCLFIG----YPKMSTGFYFYNPSEQKVFVSRNAIFLEEDYSLNESRTKVTLEE--------QNDRPM-------TVPSENNEEQVI---VPTEP---SNVQEPRRSTRIIRP------PVRLTLLNEIYQMESDGFDNDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKARLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQP 840          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A8J5YZW8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YZW8_9ROSI)

HSP 1 Score: 171 bits (433), Expect = 1.210e-42
Identity = 136/470 (28.94%), Postives = 211/470 (44.89%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEF-EGELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGI-----VGDLRRYKPEHKLAPRRAKCIMLGIDTNYP--RRTFRVRDLTTGQVIMRQAII------WHPTADAGEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHLPPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLA----RQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E +  D  GP    SL G RY +L +DD  R+ +I FLKHK + A+   +  A      G +I T+R+D G E+   + QSL K+ GIK + T  +TPQ NGV ER    L D    LL      K+  +WAEA+N A  I NR  T +L    +P+E W G +P+  H+   G      V  ++R K   +  P        GI T Y   ++ +R+ +  T ++ + + ++      W+   +  EA+  +  T     +       P+         G+R    +  R  V +E                                     E     +A+A  GW       K  MD ++A     + WE+VPRP  + V+G K +++ K   DG + K K RLV +GF Q  G  + E+ +P     TIR+++ +AA K W++ QLD   A+L   ++EE+YI+ P
Sbjct:  181 ELVHTDVCGPMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQNGVSERKNRSLVDMARCLLFEKNLPKT--MWAEAVNTAVYIQNRLPTKAL-AHKTPFEAWFGFKPSLAHMKVFGCLCYSQVPAVKRDKLSKRAVP--------GILTGYSMVKKGYRILNPLTNKIQVSRDVVFDEKACWNWERNEPEAIPEELVTD----QFEADQNDPEMDVDDEPVRGTRTLADVYERAHVAQE-------------------------------------EPCCFEEAEAHQGW-------KQAMDDEIAMIEKNKTWELVPRPTNRKVIGVKWVYRAKQNADGSLNKLKARLVVKGFSQKYGLDYMETFAPVARLDTIRLLIALAAQKQWKIHQLDVKSAFLNGLLQEEIYIDQP 591          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A5H2XV89_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XV89_PRUDU)

HSP 1 Score: 169 bits (428), Expect = 4.960e-42
Identity = 135/472 (28.60%), Postives = 221/472 (46.82%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEF-EGELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHL----------IPSGIVGDLRRYKPEHKLAPRRAKCIMLGIDTNYPRRTFRVRDLTTGQVIMRQAIIWHPTADAGEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSLG-----SRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHLPPE-QTTLRKAQAFPGW---PNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E +  D  GP    S+ G +Y +L  DD  R  ++ F+++K  A +   +  A     +G +I  +R+D GGEF   E  S   E+GI+R+ T  ++PQ NGV ER    + +   ++L   +       WAEA+N A  + NRC T SLN  V+P+E + G +P   HL          IPS +          HKL     KCI++G       + +R+ D +T ++I+ + + +    D       D A +G  T      P P +  +   SL          N++   GR+   S+                  A   TP +   VN +  +    + + ++F       +W+ A K+E++       W +V RP  K ++G K ++K K+  DG ++K K RLVA+G+ Q  G  ++E+ +P     TIR ++ +AA K+W + QLD   A+L   +KEE+Y+E P
Sbjct:  136 ELVHTDICGPMKTDSISGNKYFLLFTDDCTRMSWVYFIRNKSSALECFRKFKAMTELQSGYKIKGLRSDRGGEFLSNEFNSFCAEVGIQRQLTVAYSPQQNGVAERKNRTVVEMAKSMLHEKSIPYE--FWAEAVNTAVYLLNRCPTKSLNK-VTPFEAYTGRKPGIAHLKIFGSPCHVLIPSAL---------RHKLEENSHKCILVGY--GLCEKGYRLFDPSTRKIILSRDVHF----DEDGLWKWDNAQEGEITV-----PMPAENQNCEPSLDLDISTQMGENTILQDGRISESSQ------------------AFDHTPKKWRSVNEIMAQCNICIVEPESFEDANLDESWRNAMKAELEMIEKNNTWTLVDRPFDKPIIGVKWVYKTKLNLDGSVQKNKARLVAKGYSQKPGIDYNETFAPVARLDTIRTLIALAAQKEWNMYQLDVKSAFLNGVLKEEVYVEQP 566          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE)

HSP 1 Score: 169 bits (429), Expect = 5.880e-42
Identity = 141/478 (29.50%), Postives = 214/478 (44.77%), Query Frame = 1
Query:   16 DTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEFEGE-LQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGIVGDLRRYKPEHKLAPRRAK-CIMLGIDTNYPRRTFRVRDLTTGQVIMRQAIIWHPTA------------DAGEAVSSDTATKGGG-TRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAA----------SRQTPMRAVDVNHL------PPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            D  GP  V S G  RY +  +DDF+R   + F++ K +  +      +      G  I  +R+D G E+  +     L+E GI R+ + P++PQ NG+ ER    L D T  +L      KS   WAEA+N AC I N+C TTS N  + P ++W G +P+  HL P G    +   +P  K    R++ CIMLG  +    + +R+ D    +VI+ + +I+   A            D  E V S+T  +      H + +      S        +NR   S       ++                 D A          +R+T  R   +N          E  T ++A   P    W+ A + E+       VWE+   P GK+ +G K +FK K   DG +++ K RLVAQGF Q  G  ++E+ SP  S  TIR+ L +A   +W + Q+D   AYL   +KEE+Y+ LP
Sbjct:  328 DVCGPLPVESNGKCRYFITFIDDFSRKAVVYFMRSKSEVLEHFKNFKSMVEKQTGKFIKCLRSDNGREYVNQAFDEFLREHGIVRQLSSPYSPQQNGIAERLNRTLLDLTRTMLIDSHLPKS--FWAEAVNTACYIRNKCPTTSKN--IIPEQIWTGRKPSVRHLRPFGCKAFVHVPEPRRKKLDDRSQICIMLGYSS--ATKGYRLWDPINKRVIVSRDVIFDEKALVPESSIQNNVEDYFEIVYSETTRESMDINNHTNEASTGGVDSRIEVEEIEQNRRLNSTESNEQLQTNYEXXXXXXXXXXXXXXDVAQPSQFSMVLRNRETIKRPEYLNDYCGLSQEKKEPKTFKQAMDGPDHKLWKEAVEEELTSLKNMNVWELTDLPPGKSAIGCKWVFKIKYLADGSVERYKARLVAQGFTQEYGVDYNETYSPVVSLPTIRLFLKLAVENNWLVHQMDVKTAYLNGELKEEIYMRLP 799          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 169 bits (428), Expect = 8.320e-42
Identity = 141/475 (29.68%), Postives = 221/475 (46.53%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEF-EGELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSD-RLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGIVGDLR-RYKPEHKLAPRRAKCIMLGIDTNYPRRT--FRVRDLTTGQVIMRQAIIWHPTA--DAGEAVSSDTATKGGGTRHGHYSPR----PQKPSHYTSSL---GSRNR--NSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHLPPEQTT-------LRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E +  D  GP SV S+GG RY +  +DD+ R+ ++ F+KHK +   +  E V       G  + T+RTD GGE+   E +S LKE GI  + T P+ P  NGV ER    L + T ++   M+ GK+    WAEA+N A  + NR  TTSL   ++PYE     +P   +L   G         K   K   +  K + +G    YP  T  +++ D +T + I  + I++      D  +  S  T T         Y P     PQ       ++   G  N   +  + R  V  +       E     T +  D   R+ P R  D  ++    T        +++A        W+ A  SE +  +    WE+VP PKGK ++G++ +FK K   DG +++ K RLVAQG+ Q +G  + E  SP     +IR +L +A + DWE+ Q+D   A+L+  + E ++++ P
Sbjct:  485 ELVHSDVCGPMSVNSIGGSRYFVTFIDDYTRYTYVYFIKHKDEVLAKFKEFVNLATNLTGKSVKTLRTDNGGEYCSKEFESFLKEKGIVHQLTVPYNPAQNGVSERMNRTLVESTRSM---MSHGKTPVEFWAEAINTAVYLRNRSPTTSLKE-ITPYECLFKQKPDVSNLRVFGCEAFAHIPEKQRKKFDEKSRKAVFIG----YPEGTKGYKLYDPSTRKFIRSRDIVFVEGKFHDFKDGCSGKTCTD-------FYIPVDDVIPQVEIQDVPAVVIEGDHNELVDEENEREEVHVQPVGATYEENFMRETGNLGDKRQRRAPSRFDDKCYVADNLTADINEPVHIQEAWTGDHSVEWKEATDSEYESLMKNDTWELVPPPKGKNIVGSRWVFKVKHTADGSVERFKARLVAQGYSQSQGIDYQEIFSPVVRYTSIRSLLAVANICDWEISQMDVKTAFLQGELDEVIFMKQP 944          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A8J5YS06_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YS06_9ROSI)

HSP 1 Score: 169 bits (427), Expect = 8.320e-42
Identity = 134/470 (28.51%), Postives = 210/470 (44.68%), Query Frame = 1
Query:    1 EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEF-EGELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGI-----VGDLRRYKPEHKLAPRRAKCIMLGIDTNYP--RRTFRVRDLTTGQVIMRQAII------WHPTADAGEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHLPPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLA----RQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            E +  D  G     SL G RY +L +DD  R+ +I FLKHK + A+   +  A      G +I T+R+D G E+   + QSL K+ GIK + T  +TPQ NGV ER    L +    LL      K+  +WAEA+N A  I NR  T +L    +P+E W G +P+  H+   G      V  ++R K   +  P        GI T Y   ++ +R+ D  T ++ + + ++      W+   +  EA+  +  T     +       P+         G+R    +  R  V +E                                     E     +A+A  GW       K  MD ++A     + WE+VPRP  + V+G K +++ K   DG + K K RL+ +GF Q  G  + E+ +P     TIR+++ +AA K W++ QLD   A+L   ++EE+YI+ P
Sbjct:  145 ELVHTDVCGSMRTESLSGNRYFILFIDDCTRYCWIYFLKHKSEVAQVFIKFKAAVETETGCKIKTIRSDNGTEYTSAQFQSLCKDAGIKHQLTNVYTPQQNGVSERKNRSLMEMAKCLLFEKNLPKT--MWAEAVNTAVYIQNRLPTKAL-AHKTPFEAWFGFKPSLGHMKVFGCLCYSQVPAVKRDKLSKRAIP--------GILTGYSMVKKGYRILDPLTNKIQVSRDVVFDEKACWNWERNEPEAIPEELVTD----QFEADQNDPEMDVDDEPVRGTRTLADVYERAHVAQE-------------------------------------EPCCFEEAEAHQGW-------KQAMDDEIAMIEKNKTWELVPRPTNRKVIGVKWVYRAKQNADGSLNKLKARLIVKGFSQKYGLDYMETFAPVARLDTIRLLIALAAQKQWKIHQLDVKSAFLNGFLEEEIYIDQP 555          
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Match: A0A5N5G876_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G876_9ROSA)

HSP 1 Score: 169 bits (428), Expect = 8.480e-42
Identity = 130/472 (27.54%), Postives = 212/472 (44.92%), Query Frame = 1
Query:   16 DTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCELVAEHIAPAGIEIGTVRTDGGGEFEG-ELQSLLKELGIKRETTPPHTPQYNGVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLNPGVSPYELWVGHRPTFDHLIPSGIVGDLRRYKPEHK---LAPRRAKCIMLGIDTNYPRRTFRVRDLTTGQVIMRQAIIWHP--------------TADA----GEAVSSDTATKGGGTRHGHYSPRPQKPSHYTSSL---GSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSGRDAASRQTPMRAVDVNHLPPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLARQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGFHHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIELP 1356
            D  GP + TS    RY +  +DDF+R  ++ FL  K +A               G  I ++RTD GGEF   E  +  +E GI R+ T  +TPQ NGV ER    + +   ++L      K+   W EA N+A  + NRC T ++    +P E W GH+P+ DH    G +     + P+HK   L  +  KCI+LG+      + +R+ +  + ++++ + +++                 AD      E +SS   T   G         P+    Y  ++   GS++  +    GR  R       P        +G+  +  +T   A     +  + TT   A        W+ A   E+        WE+V  P G   +G K +FK K+ ++G + K K RLVA+G+ Q  G  + E  +P     TIR+V+ +AA K+W + QLD   A+L   ++EE++++ P
Sbjct:  617 DICGPINPTSNSNKRYLITFIDDFSRKTWVYFLVEKSEAFGMFKAYKPRVEKETGAVIRSLRTDRGGEFTSHEFSNFCRENGIHRQLTTAYTPQQNGVAERKNRTIMNMVRSMLSAKQIPKT--FWPEATNWAVHVLNRCPTLAVK-NKTPEEAWNGHKPSVDHFRIFGCIA--HAHVPDHKRVKLDAKSCKCILLGVSEES--KAYRLYEPVSQKIVISRDVVFEEDQQWSWGDNYKDVIVADLEWNDDEEISSPRTTSDPGFESNDVGDEPEPEIEYEGTMVGEGSQSDETSPHGGRTRR-------PPIWMRDYETGQGLSDEETDEMAHLALFIDRDPTTYEDAMKS---EKWRHAMNQEIQSIEKNDTWELVKLPPGGKTIGVKWVFKTKLKENGEVDKYKARLVAKGYCQQYGIDYAEVFAPVARLDTIRVVISLAAQKNWGIYQLDVKSAFLHGEIEEEVFVDQP 1071          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
O65147_SOYBN2.540e-4531.90Gag-pol polyprotein n=7 Tax=Glycine max TaxID=3847... [more]
A0A2K3MPV4_TRIPR1.490e-4430.21Gag-protease polyprotein n=2 Tax=Trifolium TaxID=3... [more]
A0A2N9IUC8_FAGSY3.500e-4428.97Integrase catalytic domain-containing protein n=2 ... [more]
A0A2N9HEI5_FAGSY5.280e-4329.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YZW8_9ROSI1.210e-4228.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A5H2XV89_PRUDU4.960e-4228.60Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A0A9W6P7_LYGHE5.880e-4229.50Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7HNY1_PARCT8.320e-4229.68Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8J5YS06_9ROSI8.320e-4228.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N5G876_9ROSA8.480e-4227.54Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig100contigA-nodosum_M_contig100:22151..23608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28532.XP_010520710.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1356
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.13e-44
EggNOG OGsCOG2801@1|root,KOG1334@1|root,KOG0017@2759|Eukaryota,KOG1334@2759|Eukaryota,37SNQ@33090|Viridiplantae,3GHRQ@35493|Streptophyta,3HVU8@3699|Brassicales
DescriptionGAG-pre-integrase domain
Cds size1356
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866354.9925764-CDS-A-nodosum_M_contig100:22150..229991680866354.9925764-CDS-A-nodosum_M_contig100:22150..22999Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig100 22151..22999 +
1680866355.002905-CDS-A-nodosum_M_contig100:23101..236081680866355.002905-CDS-A-nodosum_M_contig100:23101..23608Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig100 23102..23608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig100.1.1prot_A-nodosum_M_contig100.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig100 22151..23608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig100.1.1

>prot_A-nodosum_M_contig100.1.1 ID=prot_A-nodosum_M_contig100.1.1|Name=mRNA_A-nodosum_M_contig100.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=452bp
EQLFIDTTGPFSVTSLGGYRYAMLCVDDFARFKFIRFLKHKIDAAKELCE
LVAEHIAPAGIEIGTVRTDGGGEFEGELQSLLKELGIKRETTPPHTPQYN
GVVERALGLLRDKTGALLRGMAAGKSDRLWAEAMNYACKISNRCTTTSLN
PGVSPYELWVGHRPTFDHLIPSGIVGDLRRYKPEHKLAPRRAKCIMLGID
TNYPRRTFRVRDLTTGQVIMRQAIIWHPTADAGEAVSSDTATKGGGTRHG
HYSPRPQKPSHYTSSLGSRNRNSMSWRGRVGRESRKRMNPEKTRPTTRSG
RDAASRQTPMRAVDVNHLPPEQTTLRKAQAFPGWPNWQRAHKSEMDGQLA
RQVWEVVPRPKGKTVLGTKTIFKRKIGKDGRIKKCKYRLVAQGFRQIKGF
HHDESSSPTPSQGTIRMVLGIAAVKDWELRQLDFDMAYLEANVKEELYIE
LP
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mRNA from alignment at A-nodosum_M_contig100:22151..23608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig100.1.1 ID=mRNA_A-nodosum_M_contig100.1.1|Name=mRNA_A-nodosum_M_contig100.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1458bp|location=Sequence derived from alignment at A-nodosum_M_contig100:22151..23608+ (Ascophyllum nodosum dioecious)
GAGCAATTATTCATCGACACCACAGGTCCCTTTTCTGTGACTTCTCTAGG CGGCTACCGGTACGCGATGCTGTGCGTGGACGACTTCGCCCGCTTTAAGT TCATCCGCTTCCTCAAGCATAAAATCGACGCCGCGAAAGAGCTTTGTGAA CTCGTCGCGGAACACATCGCCCCCGCAGGCATCGAGATCGGCACCGTCCG CACCGACGGTGGAGGAGAGTTCGAAGGCGAACTCCAATCGCTCCTGAAGG AGCTGGGGATCAAGCGCGAGACGACCCCTCCGCATACACCTCAATACAAT GGCGTCGTGGAGCGGGCGCTTGGACTCCTACGAGACAAGACCGGCGCCCT TCTACGAGGTATGGCCGCAGGCAAGAGCGACCGCCTTTGGGCGGAAGCCA TGAACTACGCCTGCAAAATTTCAAACCGCTGCACGACAACCTCCCTCAAC CCCGGTGTCTCCCCATACGAGCTCTGGGTCGGACACCGGCCCACGTTCGA TCACCTCATTCCGTCTGGAATTGTCGGAGACTTGCGGCGATACAAACCCG AGCACAAGTTGGCGCCACGCAGGGCCAAGTGCATCATGCTCGGTATCGAT ACTAACTACCCGCGACGAACCTTCCGCGTCCGCGACCTCACCACCGGCCA AGTCATCATGCGTCAGGCCATCATATGGCACCCCACAGCCGATGCCGGAG AGGCAGTTTCCAGTGACACGGCGACTAAGGGGGGGGGGACGCGACACGGG CATTATTCGCCTCGACCCCAAAAACCCTCCCACTACACGTCCTCACTGGG GAGCCGGAATCGGAACAGCATGAGCTGGAGGGGGCGGGTGGGCCGGGAAG TGCGTTTGAGACTGAGAGAGTGGAGCATGAGATAGGGGGAGCTTTTGGGC CGGAGGGGGAAACATCGGAGGAGCTAAAACCGGAAAAATAATTTCTGCCA GAGCCGGAAGCGGATGAATCCGGAGAAGACTCGTCCGACGACGAGAAGCG GACGCGACGCTGCCTCGCGCCAGACCCCGATGCGCGCGGTGGACGTCAAT CATTTACCACCGGAGCAGACCACGCTCCGCAAAGCACAGGCGTTCCCGGG ATGGCCAAATTGGCAGCGCGCGCACAAAAGCGAAATGGACGGGCAACTGG CGCGCCAGGTATGGGAGGTAGTTCCCCGTCCCAAAGGGAAGACGGTGCTT GGCACCAAAACCATTTTCAAACGAAAAATCGGAAAGGACGGGCGAATAAA AAAGTGCAAGTACAGATTAGTGGCTCAGGGATTCCGACAAATAAAAGGTT TCCACCACGATGAGTCATCATCACCCACACCATCGCAGGGTACCATAAGG ATGGTGCTCGGCATCGCAGCGGTGAAAGACTGGGAGCTCCGTCAACTCGA CTTCGATATGGCGTACCTGGAGGCGAACGTAAAAGAAGAGCTGTACATCG AGCTACCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig100:22151..23608+

>mRNA_A-nodosum_M_contig100.1.1 ID=mRNA_A-nodosum_M_contig100.1.1|Name=mRNA_A-nodosum_M_contig100.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at A-nodosum_M_contig100:22151..23608+ (Ascophyllum nodosum dioecious)
GAGCAATTATTCATCGACACCACAGGTCCCTTTTCTGTGACTTCTCTAGG
CGGCTACCGGTACGCGATGCTGTGCGTGGACGACTTCGCCCGCTTTAAGT
TCATCCGCTTCCTCAAGCATAAAATCGACGCCGCGAAAGAGCTTTGTGAA
CTCGTCGCGGAACACATCGCCCCCGCAGGCATCGAGATCGGCACCGTCCG
CACCGACGGTGGAGGAGAGTTCGAAGGCGAACTCCAATCGCTCCTGAAGG
AGCTGGGGATCAAGCGCGAGACGACCCCTCCGCATACACCTCAATACAAT
GGCGTCGTGGAGCGGGCGCTTGGACTCCTACGAGACAAGACCGGCGCCCT
TCTACGAGGTATGGCCGCAGGCAAGAGCGACCGCCTTTGGGCGGAAGCCA
TGAACTACGCCTGCAAAATTTCAAACCGCTGCACGACAACCTCCCTCAAC
CCCGGTGTCTCCCCATACGAGCTCTGGGTCGGACACCGGCCCACGTTCGA
TCACCTCATTCCGTCTGGAATTGTCGGAGACTTGCGGCGATACAAACCCG
AGCACAAGTTGGCGCCACGCAGGGCCAAGTGCATCATGCTCGGTATCGAT
ACTAACTACCCGCGACGAACCTTCCGCGTCCGCGACCTCACCACCGGCCA
AGTCATCATGCGTCAGGCCATCATATGGCACCCCACAGCCGATGCCGGAG
AGGCAGTTTCCAGTGACACGGCGACTAAGGGGGGGGGGACGCGACACGGG
CATTATTCGCCTCGACCCCAAAAACCCTCCCACTACACGTCCTCACTGGG
GAGCCGGAATCGGAACAGCATGAGCTGGAGGGGGCGGGTGGGCCGGGAAA
GCCGGAAGCGGATGAATCCGGAGAAGACTCGTCCGACGACGAGAAGCGGA
CGCGACGCTGCCTCGCGCCAGACCCCGATGCGCGCGGTGGACGTCAATCA
TTTACCACCGGAGCAGACCACGCTCCGCAAAGCACAGGCGTTCCCGGGAT
GGCCAAATTGGCAGCGCGCGCACAAAAGCGAAATGGACGGGCAACTGGCG
CGCCAGGTATGGGAGGTAGTTCCCCGTCCCAAAGGGAAGACGGTGCTTGG
CACCAAAACCATTTTCAAACGAAAAATCGGAAAGGACGGGCGAATAAAAA
AGTGCAAGTACAGATTAGTGGCTCAGGGATTCCGACAAATAAAAGGTTTC
CACCACGATGAGTCATCATCACCCACACCATCGCAGGGTACCATAAGGAT
GGTGCTCGGCATCGCAGCGGTGAAAGACTGGGAGCTCCGTCAACTCGACT
TCGATATGGCGTACCTGGAGGCGAACGTAAAAGAAGAGCTGTACATCGAG
CTACCT
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