mRNA_A-nodosum_M_contig10.74.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI) HSP 1 Score: 337 bits (863), Expect = 8.590e-111 Identity = 179/280 (63.93%), Postives = 215/280 (76.79%), Query Frame = 3
Query: 324 GQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGG---------KGAQEGEGFASGFSAIAAA-DTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGAS-KAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
G+ TK++ VGD+LLELQ ARPREPQEL SFFIDQ+VQ+DG+V A+R+DPLFLLLPVL+KHA++WCPL QA+AE GC LRG+RHLDA+KLCDVNDR+GPD+LLIRINE+ V+AWLTAKV+RAT RF EL GG G GFA F AIAA D E +AEC+Q+AL VCEY+G EWA KLA FGT+R LFGG ++A KKRK WEE+ E DRNLELSHGSGG K K++ A+ KAK+ +S AQ++L+KVNKKGMKSI SFF
Sbjct: 7 GEATKFMMVGDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRALEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRKTVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFF 286
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA) HSP 1 Score: 183 bits (465), Expect = 4.990e-51 Identity = 126/300 (42.00%), Postives = 160/300 (53.33%), Query Frame = 3
Query: 306 FAHPRTGQRTKYL------RVGD-DLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGKGAQEG-----EGFASGFSAIAA----------ADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGN---WEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
AHPRTG++ K+L G D+LELQ R P SFF+ Q+VQ DG+V MA R+DP LLLP+++ +W PL Q L EA A L RHL A+K+CDVNDRLGPD +L R+NE +AWL +KV R A GG A + EG A+GFS AA A +R +A + AL VC+Y+ AEWAE++AA A L KRK WE +E DRNL LS G+G + G KAK A+ L+KVN KGMKS+ + F
Sbjct: 1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGN-----KGEAGGKKAK--APPAKSKLAKVNTKGMKSLATLF 292
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA) HSP 1 Score: 141 bits (355), Expect = 1.620e-34 Identity = 116/359 (32.31%), Postives = 166/359 (46.24%), Query Frame = 3
Query: 165 FSPIMADQHVLLVQDEAFSLSSLRDRPVQRQNGSSNDNRRLLGKFTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHA-SKWCPLDQALAEAG----CAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGK----GAQEGEGFASGFSA------IAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPK----------------KRKGNWEESKEADRNLELSHGSGG-----DVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFFK 1133
F+ M ++V LV+D + V N SN + HPR+G+ KY+ G D+LELQ + SFFID SV+ D + + R+DPL LLLP L+ A +++ PLDQA++ + L RHLD +K+CDVND+LGP+ +L R+NE V+ WL KV+RA A + GA + FA+GF A AAD+ G + +QA+ V EY W L S G A L + A K +R W+++ D+ LE + G G D K L A+ + + K L+K GMK+I SFF+
Sbjct: 1 FAIDMNRRYVFLVEDNG-GVFQANSENVGGSNSESNISDEEKCSIISLKHPRSGELLKYMAAGQDILELQKV---SVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHLARVEPRADDPCGGAGDSASFAAGFQAPRTDASAGAADSG----GVKKSLRQAVQVVLEYTAERWRAPLLESLGLDEAVLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLGSSGAETDPAKKKQKLQAT----TRTTGNKKLTKGKVTGMKTISSFFQ 347
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK) HSP 1 Score: 123 bits (309), Expect = 4.980e-29 Identity = 88/228 (38.60%), Postives = 118/228 (51.75%), Query Frame = 3
Query: 357 DLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAG------LRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGKG-AQEGEGFASGFSAIA-------AADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASF-GTKRAPLFGGNTSAPKKRKGNWEE-SKEADRNLEL 992
D+ E+Q + + SFF+ Q+VQ DG+ +A+RIDPLF++LPV SKH +++ PLDQ L+ AG + HL + +CDVNDRLGPD + RINE V+AWL K+K+ E GK Q G F GF A + +DT V + A + EYI EW EK+ S+ G L + +AP KRK WE E DR L L
Sbjct: 6 DVYEIQLLKA---SKYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKS--EKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPEFKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKA-WEAPDAERDRLLAL 227
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA) HSP 1 Score: 125 bits (313), Expect = 5.320e-28 Identity = 108/324 (33.33%), Postives = 151/324 (46.60%), Query Frame = 3
Query: 288 LGKFTGFAHPRTGQRTKYL-RVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKH-ASKWCPLDQALA---EAGCAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGKGAQE---GEGFASGF----SAIAAADTDRPVE-----GKAECQQQ-------ALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSG---------------GDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFFK*YT 1142
LG+ F HPR G ++YL L ELQ+ RP + GS+F++Q V DG + +A+ +DP +LLPVL KH A+++ PL Q LA + LR + LD + +CDVND+LG D LL R+N + M WL KV RAT L E + Q G GFA+GF AI T GK + ++ A+ V EY+ WA KL G + G A K++ W+ + ++ ++ G A+ S AQK L+K N KG+KSI SFF+ YT
Sbjct: 39 LGQVLAFTHPRGGYPSQYLLSPAGQLCELQSFRP-SGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVAL-EAAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEARLAVELVSEYLSEAWAVKLQHRCGFSEEEMRQG---AGAKKRSAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSLAQKKLAKTNLKGVKSISSFFEEYT 357
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A2B4SSH9_STYPI (Ribonuclease H2 subunit B n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSH9_STYPI) HSP 1 Score: 110 bits (276), Expect = 9.910e-24 Identity = 95/285 (33.33%), Postives = 146/285 (51.23%), Query Frame = 3
Query: 297 FTGFAHPRTGQRTKYLRV--GDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGL-RGIRHLDANKLCDVNDRLGPDELLI-RINEDMVMAWLTAKVKRATARFAELIEGGKGAQEGEGFASGFSAIAAADTDRPVEG-KAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEA--DRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
F HPRTG ++L G+ + E+ + +E S+FI+ SVQ+DGS+ + +DPLFL+LP L+K++ K+ LDQ L + + R L ++++ ++ D G D+L + R+N D AWL AKV++ TA L G + G + + R ++ +++ + A G V EY+ W+E+L S G P KR +E EA D + E S + KT+SD K ++ AQK+LSKV+KKGMKSI SFF
Sbjct: 39 FIKIPHPRTGNNQQFLLTHSGEKIFEVL----KFTEEPRSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKYSQKFRTLDQLLLDDEHPPICRLTGCLSSDEILNICDVKGDDDLQVFRLNNDKTTAWLKAKVEQ-TANSLSL--------SGVHVSKGSQSATFVRSRRHIDATRSDFVRYAFGLVSEYLSLRWSERLKESLGITDEAQLSSPEEPPTKRAKVTDEIPEATEDYSKEFSKLNS---KTESD-----KTATKLTAAQKSLSKVDKKGMKSISSFF 302
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A6P8HJ46_ACTTE (Ribonuclease H2 subunit B n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HJ46_ACTTE) HSP 1 Score: 105 bits (262), Expect = 7.370e-22 Identity = 97/304 (31.91%), Postives = 149/304 (49.01%), Query Frame = 3
Query: 243 PVQRQNGSSNDNRRLLGKFTGFAHPRTGQRTKYL--RVGDDLLELQ--AARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRH-LDANKLCDVNDRLGPDEL-LIRINEDMVMAWLTAKVKRATARF-AELIEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGT-KRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
P NGSS D + F HPRT + +L R D + E+ A PR S+FI+ SVQ+DGS+L+ IDP+FL +P L+++ +K+ +DQ L + + + + ++ L +V D G D+L R+NED ++AWL KV+ + + I KG+Q S + D + + + G VC+Y+ + WA+KL A+ + + P KR + + +A LE +KTK+ SK M+ AQK+LSKVNK GMKS+ SFF
Sbjct: 23 PETALNGSS-DGKDDEPTFVKLLHPRTEKECMFLMSRNKDAVYEIMKFAEGPR------SWFIEDSVQKDGSLLVTTSIDPIFLCIPYLTRNKTKFRTIDQVLMDDDYPAVSSLSMCVSSDVLSNVCDCKGNDDLQAYRLNEDKLIAWLKTKVECVADKLESSKINVSKGSQSATFVRSKLQSNVTRD---------DYLRYSCGIVCQYLDSSWADKLQAALNLPEEKTVLSSPEEPPSKR---TKLNNDAGTVLEDYSKEYEKIKTKT----TSKTPGKMTAAQKSLSKVNKNGMKSMASFF 303
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: UPI00077A3EC1 (ribonuclease H2 subunit B-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A3EC1) HSP 1 Score: 100 bits (250), Expect = 3.600e-20 Identity = 94/284 (33.10%), Postives = 140/284 (49.30%), Query Frame = 3
Query: 297 FTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRH-LDANKLCDVND-RLGPDELLIRINEDMVMAWLTAKVKR-ATARFAELIEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFG-TKRAPLFGGNTSAPKKRKGNWEESKEA--DRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
F +HPR+ + ++L + R +E E S+F++ SVQ DGS+ + IDPLFL+LP K + K+ L+Q L + + + L +N+L +++D + D R+N D +AWL KVK+ A + I KG+Q S A A D + ++ A G V +Y+ +W+E+L S T APL P KR +E EA D + E S S KT+ D G+ ++ AQK+LSKV+K GMKSI SFF
Sbjct: 40 FIKISHPRSSKAVQFLLSPCRQKVFEVLRFKE--EPRSWFVEDSVQRDGSLFVVTPIDPLFLVLPYFEKLSQKFRTLEQILEDDRHPSINTLTSCLSSNELLNISDVKRDHDLQAYRLNNDKTIAWLKLKVKKTADCLSSSGINASKGSQNAVFVRSKRHANATRD---------DYERYAFGLVSDYLSPQWSERLRESLSITDDAPLSSPE-EPPTKRAKVSDEIPEATEDYSKEFSKLSS---KTEMDKTGSK-----LTAAQKSLSKVDKSGMKSISSFF 303
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A7RQZ3_NEMVE (Ribonuclease H2 subunit B n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQZ3_NEMVE) HSP 1 Score: 97.1 bits (240), Expect = 8.470e-19 Identity = 100/324 (30.86%), Postives = 147/324 (45.37%), Query Frame = 3
Query: 183 DQHVLLVQDEAFSLSSLRDRPVQRQNGSSNDNRRLLGKFTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGL----RGIRHLDANKLCDVNDRLGPDELLI-RINEDMVMAWLTAKVKRATARFAEL-IEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKL--AASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
+Q ++L D+A S + + P F HPRTG+ + L D+ + A+ ++ E S+FID +V EDGS+++A ID +FL LP L K +S++ LDQ L ++ + I H +CD G D+L + RINED MAWL KV+ A I KG+Q A+ + +D R + + + G +C+Y+ W EKL A + K + P KR EE E + + K KS + A K M+ Q+ LSKV+K GMKSI SFF
Sbjct: 20 NQWIMLAPDDALSSTPESESPPL---------------FAKIPHPRTGKGVQLLFSSDEKSVCEVAKFKD--EPRSWFIDDTVHEDGSMVIATPIDSVFLCLPYLEKCSSQFRTLDQILIDSKFPSVGKLTNCITHESLTSVCDCK---GDDDLHVYRINEDKTMAWLKTKVECVADYLATSDINVSKGSQS----ATFVRSRKHSDVTRE-----DHLRYSSGMICDYLSLSWEEKLKKALNLPEKDKEKEVSDEEPPSKRV-KLEEGSETVEDYSKEY-----EKLKSK-IPAGKTPGKMTAGQRALSKVDKTGMKSISSFF 307
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5) HSP 1 Score: 94.4 bits (233), Expect = 6.540e-18 Identity = 85/280 (30.36%), Postives = 130/280 (46.43%), Query Frame = 3
Query: 297 FTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRH-LDANKLCDVNDRLGPDELLI-RINEDMVMAWLTAKVKRATARFAELIEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
F HP+TG +YL + + + E S+FID SV +DG++ +ID LF++LP L ++K+ L+ L E+ + + H + LC V D G ++L++ ++N D V++WL KV + + + GAQ S S D A G V +YI W++KL AS G + G + P +K +ES A N + S K K+ D + ++ AQK+L+KVN KGMKSI SFF
Sbjct: 40 FVMLPHPKTGHIQQYLLSKNKQEISEILKFNETPR--SWFIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQLKQASICTSGAQSSTFVRSSKSRGNTQDY----------LGYAFGLVSDYISDYWSQKLKASLGINDE-ISGSSEEEPACKKVKLDESLAAKPNEDYSKFF---AKAKATDQNTNVK---LTAAQKSLAKVNTKGMKSISSFF 300 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.74.1 >prot_A-nodosum_M_contig10.74.1 ID=prot_A-nodosum_M_contig10.74.1|Name=mRNA_A-nodosum_M_contig10.74.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=320bp MADQHVLLVQDEAFSLSSLRDRPVQRQNGSSNDNRRLLGKFTGFAHPRTGback to top mRNA from alignment at A-nodosum_M_contig10:785516..788647+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.74.1 ID=mRNA_A-nodosum_M_contig10.74.1|Name=mRNA_A-nodosum_M_contig10.74.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3132bp|location=Sequence derived from alignment at A-nodosum_M_contig10:785516..788647+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:785516..788647+ >mRNA_A-nodosum_M_contig10.74.1 ID=mRNA_A-nodosum_M_contig10.74.1|Name=mRNA_A-nodosum_M_contig10.74.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at A-nodosum_M_contig10:785516..788647+ (Ascophyllum nodosum dioecious)back to top |