mRNA_A-nodosum_M_contig10.74.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.74.1
Unique NamemRNA_A-nodosum_M_contig10.74.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: D7FZK3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK3_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 8.590e-111
Identity = 179/280 (63.93%), Postives = 215/280 (76.79%), Query Frame = 3
Query:  324 GQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGG---------KGAQEGEGFASGFSAIAAA-DTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGAS-KAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
            G+ TK++ VGD+LLELQ ARPREPQEL SFFIDQ+VQ+DG+V  A+R+DPLFLLLPVL+KHA++WCPL QA+AE GC  LRG+RHLDA+KLCDVNDR+GPD+LLIRINE+ V+AWLTAKV+RAT RF EL  GG              G GFA  F AIAA  D     E +AEC+Q+AL  VCEY+G EWA KLA  FGT+R  LFGG ++A KKRK  WEE+ E DRNLELSHGSGG  K K++   A+ KAK+ +S AQ++L+KVNKKGMKSI SFF
Sbjct:    7 GEATKFMMVGDNLLELQVARPREPQELASFFIDQAVQQDGAVHAASRVDPLFLLLPVLAKHATRWCPLAQAMAEGGCGSLRGLRHLDADKLCDVNDRMGPDDLLIRINEESVLAWLTAKVERATRRFTELATGGGEESGWAXXXXXXXGAGFARDFQAIAAPMDARMQKEVEAECKQRALEAVCEYLGDEWATKLAERFGTERGVLFGGRSTATKKRKTVWEETAETDRNLELSHGSGGGQKAKTEAAAAATKAKQPLSHAQRSLAKVNKKGMKSISSFF 286          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A835YS23_9STRA (Ribonuclease H2, subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS23_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.990e-51
Identity = 126/300 (42.00%), Postives = 160/300 (53.33%), Query Frame = 3
Query:  306 FAHPRTGQRTKYL------RVGD-DLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGKGAQEG-----EGFASGFSAIAA----------ADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGN---WEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
             AHPRTG++ K+L        G  D+LELQ  R   P    SFF+ Q+VQ DG+V MA R+DP  LLLP+++    +W PL Q L EA  A L   RHL A+K+CDVNDRLGPD +L R+NE   +AWL +KV R  A       GG  A +      EG A+GFS  AA          A  +R    +A   + AL  VC+Y+ AEWAE++AA      A L         KRK     WE  +E DRNL LS G+G        + G  KAK     A+  L+KVN KGMKS+ + F
Sbjct:    1 MAHPRTGEKVKWLLRPTHDEPGSLDVLELQVTRVA-PTSFCSFFVGQAVQSDGAVYMATRVDPALLLLPLMTACKDRWIPLGQQLQEARLAWLLRCRHLGADKICDVNDRLGPDLMLYRLNEAKALAWLLSKVDRVAAHLDGGAHGGAAADDANAGAVEGMAAGFSGNAAPNDAVIDPAAAAAERARARRARLLRTALEIVCDYVPAEWAERVAARHDATAAALLEARGGGGIKRKAPATAWEACREEDRNLSLSLGNGN-----KGEAGGKKAK--APPAKSKLAKVNTKGMKSLATLF 292          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A7S2XY24_9STRA (Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY24_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.620e-34
Identity = 116/359 (32.31%), Postives = 166/359 (46.24%), Query Frame = 3
Query:  165 FSPIMADQHVLLVQDEAFSLSSLRDRPVQRQNGSSNDNRRLLGKFTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHA-SKWCPLDQALAEAG----CAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGK----GAQEGEGFASGFSA------IAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPK----------------KRKGNWEESKEADRNLELSHGSGG-----DVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFFK 1133
            F+  M  ++V LV+D    +       V   N  SN +           HPR+G+  KY+  G D+LELQ        +  SFFID SV+ D  + +  R+DPL LLLP L+  A +++ PLDQA++ +        L   RHLD +K+CDVND+LGP+ +L R+NE  V+ WL  KV+RA    A +         GA +   FA+GF A        AAD+     G  +  +QA+  V EY    W   L  S G   A L   +  A K                +R   W+++   D+ LE + G G      D   K   L A+    + +   K L+K    GMK+I SFF+
Sbjct:    1 FAIDMNRRYVFLVEDNG-GVFQANSENVGGSNSESNISDEEKCSIISLKHPRSGELLKYMAAGQDILELQKV---SVSKYSSFFIDNSVKSDAVLWVGTRVDPLLLLLPCLAHQAQARFVPLDQAVSSSSGDDDSLQLLKCRHLDLDKICDVNDKLGPETMLYRLNEGKVVGWLKGKVERAQRHLARVEPRADDPCGGAGDSASFAAGFQAPRTDASAGAADSG----GVKKSLRQAVQVVLEYTAERWRAPLLESLGLDEAVLEPPSRKAAKSKQQGKADDEPATAGERRAQQWQDAATLDKALEYTQGLGSSGAETDPAKKKQKLQAT----TRTTGNKKLTKGKVTGMKTISSFFQ 347          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A7S3YG07_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG07_HETAK)

HSP 1 Score: 123 bits (309), Expect = 4.980e-29
Identity = 88/228 (38.60%), Postives = 118/228 (51.75%), Query Frame = 3
Query:  357 DLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAG------LRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGKG-AQEGEGFASGFSAIA-------AADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASF-GTKRAPLFGGNTSAPKKRKGNWEE-SKEADRNLEL 992
            D+ E+Q  +     +  SFF+ Q+VQ DG+  +A+RIDPLF++LPV SKH +++ PLDQ L+    AG      +    HL  + +CDVNDRLGPD +  RINE  V+AWL  K+K+         E GK   Q G  F  GF A +        +DT   V       + A   + EYI  EW EK+  S+ G     L   + +AP KRK  WE    E DR L L
Sbjct:    6 DVYEIQLLKA---SKYSSFFVGQAVQSDGNFYVASRIDPLFIVLPVFSKHGTRYSPLDQILSAGSVAGEHNFLQIASCNHLKLSNICDVNDRLGPDSIFYRINEAKVVAWLKMKIKQVYCHLKS--EKGKSHMQVGGSFVRGFEATSKSTGSSSGSDTKDSVITTDPEFKLAAKLIFEYICEEWQEKVLQSYSGLGAKDLEEASGAAPVKRKA-WEAPDAERDRLLAL 227          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A4D9DAM5_9STRA (Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAM5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.320e-28
Identity = 108/324 (33.33%), Postives = 151/324 (46.60%), Query Frame = 3
Query:  288 LGKFTGFAHPRTGQRTKYL-RVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKH-ASKWCPLDQALA---EAGCAGLRGIRHLDANKLCDVNDRLGPDELLIRINEDMVMAWLTAKVKRATARFAELIEGGKGAQE---GEGFASGF----SAIAAADTDRPVE-----GKAECQQQ-------ALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSG---------------GDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFFK*YT 1142
            LG+   F HPR G  ++YL      L ELQ+ RP    + GS+F++Q V  DG + +A+ +DP  +LLPVL KH A+++ PL Q LA   +     LR  + LD + +CDVND+LG D LL R+N +  M WL  KV RAT     L E  +  Q    G GFA+GF     AI    T          GK + ++        A+  V EY+   WA KL    G     +  G   A  K++  W+   + ++   ++   G                             A+   S AQK L+K N KG+KSI SFF+ YT
Sbjct:   39 LGQVLAFTHPRGGYPSQYLLSPAGQLCELQSFRP-SGSKFGSWFVEQRVVSDGLLYVASPVDPKLILLPVLEKHGATRFSPLAQLLAAEADGAYLALRQCQGLDLHLVCDVNDQLGEDMLLYRLNAEKTMDWLAKKVARATQALVAL-EAAREEQNNGMGSGFAAGFVVEAGAIQGGSTGEDKRSTGAGGKVQTREATREEARLAVELVSEYLSEAWAVKLQHRCGFSEEEMRQG---AGAKKRSAWDGDGDLEQGTAMALTQGKRXXXXXXXXXXXXXXXXXXXXXXXXMRSAQGGQSLAQKKLAKTNLKGVKSISSFFEEYT 357          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A2B4SSH9_STYPI (Ribonuclease H2 subunit B n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4SSH9_STYPI)

HSP 1 Score: 110 bits (276), Expect = 9.910e-24
Identity = 95/285 (33.33%), Postives = 146/285 (51.23%), Query Frame = 3
Query:  297 FTGFAHPRTGQRTKYLRV--GDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGL-RGIRHLDANKLCDVNDRLGPDELLI-RINEDMVMAWLTAKVKRATARFAELIEGGKGAQEGEGFASGFSAIAAADTDRPVEG-KAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEA--DRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
            F    HPRTG   ++L    G+ + E+     +  +E  S+FI+ SVQ+DGS+ +   +DPLFL+LP L+K++ K+  LDQ L +     + R    L ++++ ++ D  G D+L + R+N D   AWL AKV++ TA    L         G   + G  +     + R ++  +++  + A G V EY+   W+E+L  S G             P KR    +E  EA  D + E S  +    KT+SD     K    ++ AQK+LSKV+KKGMKSI SFF
Sbjct:   39 FIKIPHPRTGNNQQFLLTHSGEKIFEVL----KFTEEPRSWFIEDSVQKDGSLFVITPVDPLFLVLPYLTKYSQKFRTLDQLLLDDEHPPICRLTGCLSSDEILNICDVKGDDDLQVFRLNNDKTTAWLKAKVEQ-TANSLSL--------SGVHVSKGSQSATFVRSRRHIDATRSDFVRYAFGLVSEYLSLRWSERLKESLGITDEAQLSSPEEPPTKRAKVTDEIPEATEDYSKEFSKLNS---KTESD-----KTATKLTAAQKSLSKVDKKGMKSISSFF 302          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A0A6P8HJ46_ACTTE (Ribonuclease H2 subunit B n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HJ46_ACTTE)

HSP 1 Score: 105 bits (262), Expect = 7.370e-22
Identity = 97/304 (31.91%), Postives = 149/304 (49.01%), Query Frame = 3
Query:  243 PVQRQNGSSNDNRRLLGKFTGFAHPRTGQRTKYL--RVGDDLLELQ--AARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRH-LDANKLCDVNDRLGPDEL-LIRINEDMVMAWLTAKVKRATARF-AELIEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGT-KRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
            P    NGSS D +     F    HPRT +   +L  R  D + E+   A  PR      S+FI+ SVQ+DGS+L+   IDP+FL +P L+++ +K+  +DQ L +     +  +   + ++ L +V D  G D+L   R+NED ++AWL  KV+    +  +  I   KG+Q      S   +    D         +  + + G VC+Y+ + WA+KL A+    +   +       P KR    + + +A   LE        +KTK+     SK    M+ AQK+LSKVNK GMKS+ SFF
Sbjct:   23 PETALNGSS-DGKDDEPTFVKLLHPRTEKECMFLMSRNKDAVYEIMKFAEGPR------SWFIEDSVQKDGSLLVTTSIDPIFLCIPYLTRNKTKFRTIDQVLMDDDYPAVSSLSMCVSSDVLSNVCDCKGNDDLQAYRLNEDKLIAWLKTKVECVADKLESSKINVSKGSQSATFVRSKLQSNVTRD---------DYLRYSCGIVCQYLDSSWADKLQAALNLPEEKTVLSSPEEPPSKR---TKLNNDAGTVLEDYSKEYEKIKTKT----TSKTPGKMTAAQKSLSKVNKNGMKSMASFF 303          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: UPI00077A3EC1 (ribonuclease H2 subunit B-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A3EC1)

HSP 1 Score: 100 bits (250), Expect = 3.600e-20
Identity = 94/284 (33.10%), Postives = 140/284 (49.30%), Query Frame = 3
Query:  297 FTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRH-LDANKLCDVND-RLGPDELLIRINEDMVMAWLTAKVKR-ATARFAELIEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFG-TKRAPLFGGNTSAPKKRKGNWEESKEA--DRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
            F   +HPR+ +  ++L         +  R +E  E  S+F++ SVQ DGS+ +   IDPLFL+LP   K + K+  L+Q L +     +  +   L +N+L +++D +   D    R+N D  +AWL  KVK+ A    +  I   KG+Q      S   A A  D         + ++ A G V +Y+  +W+E+L  S   T  APL       P KR    +E  EA  D + E S  S    KT+ D  G+      ++ AQK+LSKV+K GMKSI SFF
Sbjct:   40 FIKISHPRSSKAVQFLLSPCRQKVFEVLRFKE--EPRSWFVEDSVQRDGSLFVVTPIDPLFLVLPYFEKLSQKFRTLEQILEDDRHPSINTLTSCLSSNELLNISDVKRDHDLQAYRLNNDKTIAWLKLKVKKTADCLSSSGINASKGSQNAVFVRSKRHANATRD---------DYERYAFGLVSDYLSPQWSERLRESLSITDDAPLSSPE-EPPTKRAKVSDEIPEATEDYSKEFSKLSS---KTEMDKTGSK-----LTAAQKSLSKVDKSGMKSISSFF 303          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: A7RQZ3_NEMVE (Ribonuclease H2 subunit B n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQZ3_NEMVE)

HSP 1 Score: 97.1 bits (240), Expect = 8.470e-19
Identity = 100/324 (30.86%), Postives = 147/324 (45.37%), Query Frame = 3
Query:  183 DQHVLLVQDEAFSLSSLRDRPVQRQNGSSNDNRRLLGKFTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGL----RGIRHLDANKLCDVNDRLGPDELLI-RINEDMVMAWLTAKVKRATARFAEL-IEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKL--AASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
            +Q ++L  D+A S +   + P                 F    HPRTG+  + L   D+    + A+ ++  E  S+FID +V EDGS+++A  ID +FL LP L K +S++  LDQ L ++    +      I H     +CD     G D+L + RINED  MAWL  KV+      A   I   KG+Q     A+   +   +D  R      +  + + G +C+Y+   W EKL  A +   K       +   P KR    EE  E   +    +      K KS  + A K    M+  Q+ LSKV+K GMKSI SFF
Sbjct:   20 NQWIMLAPDDALSSTPESESPPL---------------FAKIPHPRTGKGVQLLFSSDEKSVCEVAKFKD--EPRSWFIDDTVHEDGSMVIATPIDSVFLCLPYLEKCSSQFRTLDQILIDSKFPSVGKLTNCITHESLTSVCDCK---GDDDLHVYRINEDKTMAWLKTKVECVADYLATSDINVSKGSQS----ATFVRSRKHSDVTRE-----DHLRYSSGMICDYLSLSWEEKLKKALNLPEKDKEKEVSDEEPPSKRV-KLEEGSETVEDYSKEY-----EKLKSK-IPAGKTPGKMTAGQRALSKVDKTGMKSISSFF 307          
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Match: UPI00106D86B5 (ribonuclease H2 subunit B-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D86B5)

HSP 1 Score: 94.4 bits (233), Expect = 6.540e-18
Identity = 85/280 (30.36%), Postives = 130/280 (46.43%), Query Frame = 3
Query:  297 FTGFAHPRTGQRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPLFLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRH-LDANKLCDVNDRLGPDELLI-RINEDMVMAWLTAKVKRATARFAELIEGGKGAQEGEGFASGFSAIAAADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNTSAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQKNLSKVNKKGMKSIKSFF 1130
            F    HP+TG   +YL   +     +  +  E     S+FID SV +DG++    +ID LF++LP L   ++K+  L+  L E+    +  + H +    LC V D  G ++L++ ++N D V++WL  KV +   +  +      GAQ      S  S     D              A G V +YI   W++KL AS G     + G +   P  +K   +ES  A  N + S       K K+ D   +     ++ AQK+L+KVN KGMKSI SFF
Sbjct:   40 FVMLPHPKTGHIQQYLLSKNKQEISEILKFNETPR--SWFIDNSVLQDGNLYFGTKIDALFMVLPSLKSTSTKFMTLEHILQESDNNNICELSHCITKEDLCLVTDMKGEEDLIVCKLNHDKVISWLEKKVYQTEDQLKQASICTSGAQSSTFVRSSKSRGNTQDY----------LGYAFGLVSDYISDYWSQKLKASLGINDE-ISGSSEEEPACKKVKLDESLAAKPNEDYSKFF---AKAKATDQNTNVK---LTAAQKSLAKVNTKGMKSISSFF 300          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK3_ECTSI8.590e-11163.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS23_9STRA4.990e-5142.00Ribonuclease H2, subunit B n=1 Tax=Tribonema minus... [more]
A0A7S2XY24_9STRA1.620e-3432.31Ribonuclease H2 subunit B n=1 Tax=Fibrocapsa japon... [more]
A0A7S3YG07_HETAK4.980e-2938.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9DAM5_9STRA5.320e-2833.33Ribonuclease H2 subunit B n=1 Tax=Nannochloropsis ... [more]
A0A2B4SSH9_STYPI9.910e-2433.33Ribonuclease H2 subunit B n=1 Tax=Stylophora pisti... [more]
A0A6P8HJ46_ACTTE7.370e-2231.91Ribonuclease H2 subunit B n=1 Tax=Actinia tenebros... [more]
UPI00077A3EC13.600e-2033.10ribonuclease H2 subunit B-like n=2 Tax=Acropora Ta... [more]
A7RQZ3_NEMVE8.470e-1930.86Ribonuclease H2 subunit B n=1 Tax=Nematostella vec... [more]
UPI00106D86B56.540e-1830.36ribonuclease H2 subunit B-like n=1 Tax=Dendronepht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:785516..788647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZK3
Preferred nameRNASEH2B
PFAMsRNase_H2-Ydr279
Model size1316
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00074
KEGG koko:K01937,ko:K10744
KEGG ReactionR00571,R00573
KEGG Pathwayko00240,ko01100,ko03030,map00240,map01100,map03030
KEGG ModuleM00052
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0001701,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006401,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009117,GO:0009259,GO:0009636,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010389,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0015036,GO:0016070,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032299,GO:0032501,GO:0032502,GO:0032991,GO:0033260,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0042127,GO:0042221,GO:0043009,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0048145,GO:0048146,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097237,GO:0098754,GO:0098869,GO:0140098,GO:1901135,GO:1901360,GO:1901361,GO:1901575,GO:1901576,GO:1901976,GO:1901987,GO:1901990,GO:1902749,GO:1902969,GO:1903047,GO:1903469,GO:1990748,GO:2000001,GO:2001020
Exons5
Evalue1.56e-113
EggNOG OGsKOG4705@1|root,KOG4705@2759|Eukaryota
Ec32 ortholog descriptionRibonuclease H2, subunit B
Ec32 orthologEc-01_010140.1
EC6.3.4.2
DescriptionRNA catabolic process
Cds size960
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.74.1prot_A-nodosum_M_contig10.74.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 785692..788467 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866350.2229385-UTR-A-nodosum_M_contig10:785515..7856911680866350.2229385-UTR-A-nodosum_M_contig10:785515..785691Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 785516..785691 +
1680866350.2873497-UTR-A-nodosum_M_contig10:788467..7886471680866350.2873497-UTR-A-nodosum_M_contig10:788467..788647Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 788468..788647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866350.2343035-CDS-A-nodosum_M_contig10:785691..7858391680866350.2343035-CDS-A-nodosum_M_contig10:785691..785839Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 785692..785839 +
1680866350.2434373-CDS-A-nodosum_M_contig10:786643..7869281680866350.2434373-CDS-A-nodosum_M_contig10:786643..786928Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 786644..786928 +
1680866350.2559702-CDS-A-nodosum_M_contig10:787190..7874731680866350.2559702-CDS-A-nodosum_M_contig10:787190..787473Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 787191..787473 +
1680866350.2662184-CDS-A-nodosum_M_contig10:787813..7879401680866350.2662184-CDS-A-nodosum_M_contig10:787813..787940Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 787814..787940 +
1680866350.2756429-CDS-A-nodosum_M_contig10:788350..7884671680866350.2756429-CDS-A-nodosum_M_contig10:788350..788467Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 788351..788467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.74.1

>prot_A-nodosum_M_contig10.74.1 ID=prot_A-nodosum_M_contig10.74.1|Name=mRNA_A-nodosum_M_contig10.74.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=320bp
MADQHVLLVQDEAFSLSSLRDRPVQRQNGSSNDNRRLLGKFTGFAHPRTG
QRTKYLRVGDDLLELQAARPREPQELGSFFIDQSVQEDGSVLMANRIDPL
FLLLPVLSKHASKWCPLDQALAEAGCAGLRGIRHLDANKLCDVNDRLGPD
ELLIRINEDMVMAWLTAKVKRATARFAELIEGGKGAQEGEGFASGFSAIA
AADTDRPVEGKAECQQQALGTVCEYIGAEWAEKLAASFGTKRAPLFGGNT
SAPKKRKGNWEESKEADRNLELSHGSGGDVKTKSDDLGASKAKKSMSQAQ
KNLSKVNKKGMKSIKSFFK*
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mRNA from alignment at A-nodosum_M_contig10:785516..788647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.74.1 ID=mRNA_A-nodosum_M_contig10.74.1|Name=mRNA_A-nodosum_M_contig10.74.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3132bp|location=Sequence derived from alignment at A-nodosum_M_contig10:785516..788647+ (Ascophyllum nodosum dioecious)
CGCGAATCGTAGTCTCACGAGGTCACAACCTTCACTGTGTTTGTTTGCTC GAATTTTGAATTTTGAGGCCGTATCTGTAAGTAAAGCTGTAGTGGTGACT GCACCTGACTCTGCTCGAGAACAAGTGTACGTCAAAGATCCTCTGTGTTC CCATCTGGTGTCGATTCTCCCCGATTATGGCCGACCAGCACGTGCTCTTG GTGCAGGATGAGGCCTTCAGTTTGTCTTCCCTCAGGGACCGCCCAGTACA GCGACAAAACGGCTCATCCAACGACAACCGTCGTCTTCTTGGGAAGTTCA CCGGCTTTGCACACCCTCGTACAGGTACGAGCGATACCACCCTGGTGCGT TTTCGCTGCCATAGGAGGGGTGTTCGTTTCTCTTGGCCTTCAAGGTGGTG AGACCTAACAACCTCACAAACCAATACTTCGTACTTGTACTTCGAAACAA AGAAAGTCGTATTACAAAAGTATAGCAGTTTGTACAAGTATCACAGTGTA CGGACCGACGAAAATGTGCTACTCAAGGGTGGGACGCGCCCTGTGAACTG TAGTGTGAATCAAGCCTAGACGATTCTTCTCCCGTCGGGCTCCTGAGGAC AACCACAGAACTTCCCAGGCTCTCTCGAGGCATGTGTTACGCTAATCTAC AACGAGAGACGCGACAAACACCGTTGATTTATTTTACGTTAGGTCCCCCC GGTAGCTCAGTTGGTAACCTCGTAACCTTCTGACACGTTGCGACGTGAGT TCGAATCCCGGTAACTGAGATTTTTCCTCACTAAAAAATACAAAAACTAA AAATGCCCAACAAGTACTTGTAGAGAACATTAGCTAAATCGTTAGAGCTA GTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAACGGCTGAATC CTTCTCTCGAGAAAAATAAAGGCACGCACCGCAGAAGGAAGGTGGATGAG AAATCCTGTGTGACCCCGGCTGGTACATCCAACGAACTTGACGTCCAGAA TAAATGGGAAGAAAACACACACACGTAGTACTTGTGCATTTGGTTACTCG GTTGTCTTTTTAATTTATTTTATTTTTATGTACCATGTTTCGGCCACGGA CGAATATGAAATGATCCCGTGAACGAAGGGCAACGGACGAAGTATTTGCG AGTCGGGGACGATCTCCTAGAGCTGCAAGCGGCAAGGCCGCGAGAGCCCC AGGAGCTGGGCAGCTTCTTCATCGACCAGTCCGTCCAAGAAGACGGCTCA GTCCTCATGGCCAATCGGATAGACCCGCTGTTTCTTCTCCTGCCCGTCTT GAGCAAGCACGCGAGCAAGTGGTGTCCCCTGGACCAGGCTCTCGCCGAGG CAGGTTGCGCTGGATTGCGGGGTATCCGGCACCTCGACGCGAATAAGCTG TGCGACGTTAACGGTGGGTTATTTATTTTCATGGTCAACTCGGTTCCTCA CGGCAACAGTTATTGCTACTTTTCTCAAGAACAAAGTCATTTTTTCTCCG AGATGGGTAGACTACACGTAGCCCTACCACTCCCAATTGTAGCGGTTGAA CTCAGTAGTGAACCGATCCCGCGGATTGAAGTCCTTTCTCAGAGACCACC GTGTTTGAATATTCGCTGTGACGCCGCTGTATTCGCGTACGTGTCAATTC ACCGTGCCCTGCGTCGTGGTCACAGATCGGCTGGGTCCGGACGAGCTGCT GATCCGCATTAACGAGGATATGGTCATGGCATGGTTGACGGCAAAGGTAA AACGTGCGACTGCGAGGTTCGCCGAGCTGATCGAGGGGGGAAAGGGCGCT CAAGAGGGCGAAGGTTTCGCAAGCGGGTTTTCCGCGATCGCAGCAGCGGA TACGGATCGACCGGTAGAAGGGAAGGCGGAGTGTCAGCAGCAGGCGTTAG GGACCGTGTGCGAATACATCGGCGCAGAGTGGGCTGAAAAGCTAGCCGCA AGTTTCGGGTAAGGCTGCTGTCGTCCTCGAGTTTTCCCCAAAGTCTACAT GTTATAGGCTTCAAATTTTGGCTAGGAAATTGATATATTTCCTCCATTCG TGAGGCATTCAACGTTCTGAAGGATACGCAAGCGTTCTCTGTTTGGACCT CGTCTTAGACCAACGCTCCAAGTACGGCGGGTCGATCTCTCAAATTTCCA ACCCCGAGGCTGCGGTGTTTCCTCCTTTCCCTGCAAACGATTGCTTCCGC CGAAGACTTTTAACTTCCCAAGGCGCAGTAGCAGTGCCGCCTCGACCCCT ATAACGTACCTTCCCCAAACGCAACTTCCTCGAATCACAAAATGATAGCA CGAAACGGGCGCCTCTGTTCGGTGGGAACACGAGCGCTCCCAAGAAACGG AAGGGAAATTGGGAGGAATCGAAAGAGGCCGACAGAAACCTCGAGCTGTC ACATGGCAGCGGGGGGGACGTTAAGGTGACCTACTCTGTCTGAGTTTTGC GTAATTGTCGGCCCCGACCTTCTTTCCATAGAAGTCATCCTCCTTTTCGG GGGTGACTTTTGAAAAGCCACCCGCGACTGTTATAGTGTTGTTTGTTGCT GGTGTGTTGTACTACCGTTATTGCAAGATAAAAAGTGAGAACACCCGTGA CTTTGCAAGAATCGCATGTGTTCGACGTGTTCTTACTGTGGCGTCGATAA TCCCCCGGCGTGAAAAAAACTGCTGCCGGCGTAAGAATCATGACAAAATA ACAAAAAGGGCGTATTATAGTCCAAAAGAGATCTTGTATAAGCTTTGCGG GTCCACTCTTGTCGCTGGCTCTGCGTTGACAATCCTTACTTGCTCATCCT CTCCCGCGTGTGTTGAACGACAATTTGCGCAAAAGACGAAATCGGACGAT CTCGGGGCATCGAAGGCGAAGAAATCGATGAGCCAAGCGCAGAAGAATTT GTCCAAGGTCAACAAAAAGGGAATGAAGTCCATCAAGAGTTTTTTCAAGT AGTACACTGGTACTCTCTTTCATTTGACCGATTATGTAACCAGTATGTGG ATTCGCGGATTGAAAGAACCTGGCATTTCTTTTTCTTTTACGTGTAGTCT CAGTCTGTCTTTTGGCGCCGAACGAAGGACAAATTACGTCAAACATGTGG CTCCATTTTTGTAAGAATGCCCTCGAAACCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:785516..788647+

>mRNA_A-nodosum_M_contig10.74.1 ID=mRNA_A-nodosum_M_contig10.74.1|Name=mRNA_A-nodosum_M_contig10.74.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at A-nodosum_M_contig10:785516..788647+ (Ascophyllum nodosum dioecious)
ATGGCCGACCAGCACGTGCTCTTGGTGCAGGATGAGGCCTTCAGTTTGTC
TTCCCTCAGGGACCGCCCAGTACAGCGACAAAACGGCTCATCCAACGACA
ACCGTCGTCTTCTTGGGAAGTTCACCGGCTTTGCACACCCTCGTACAGGG
CAACGGACGAAGTATTTGCGAGTCGGGGACGATCTCCTAGAGCTGCAAGC
GGCAAGGCCGCGAGAGCCCCAGGAGCTGGGCAGCTTCTTCATCGACCAGT
CCGTCCAAGAAGACGGCTCAGTCCTCATGGCCAATCGGATAGACCCGCTG
TTTCTTCTCCTGCCCGTCTTGAGCAAGCACGCGAGCAAGTGGTGTCCCCT
GGACCAGGCTCTCGCCGAGGCAGGTTGCGCTGGATTGCGGGGTATCCGGC
ACCTCGACGCGAATAAGCTGTGCGACGTTAACGATCGGCTGGGTCCGGAC
GAGCTGCTGATCCGCATTAACGAGGATATGGTCATGGCATGGTTGACGGC
AAAGGTAAAACGTGCGACTGCGAGGTTCGCCGAGCTGATCGAGGGGGGAA
AGGGCGCTCAAGAGGGCGAAGGTTTCGCAAGCGGGTTTTCCGCGATCGCA
GCAGCGGATACGGATCGACCGGTAGAAGGGAAGGCGGAGTGTCAGCAGCA
GGCGTTAGGGACCGTGTGCGAATACATCGGCGCAGAGTGGGCTGAAAAGC
TAGCCGCAAGTTTCGGCACGAAACGGGCGCCTCTGTTCGGTGGGAACACG
AGCGCTCCCAAGAAACGGAAGGGAAATTGGGAGGAATCGAAAGAGGCCGA
CAGAAACCTCGAGCTGTCACATGGCAGCGGGGGGGACGTTAAGACGAAAT
CGGACGATCTCGGGGCATCGAAGGCGAAGAAATCGATGAGCCAAGCGCAG
AAGAATTTGTCCAAGGTCAACAAAAAGGGAATGAAGTCCATCAAGAGTTT
TTTCAAGTAG
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