mRNA_A-nodosum_M_contig10.53.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.53.1
Unique NamemRNA_A-nodosum_M_contig10.53.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: D7FM24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM24_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.520e-75
Identity = 111/135 (82.22%), Postives = 126/135 (93.33%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVFYPSEG 405
            ALPGPLFNLSAYLGAVY+GVPGAFVGW+ LFGPGV LIFG LPFWGT+RK+AWFKIFLQGVNSTAIGLV+AACVLLWG+A+D+YADAIVAVVAGCMQ+FLG+QAPWCI+ GGVLG+LLSD++ SL Q  F+P EG
Sbjct:  291 ALPGPLFNLSAYLGAVYRGVPGAFVGWLGLFGPGVSLIFGFLPFWGTIRKVAWFKIFLQGVNSTAIGLVVAACVLLWGAAIDSYADAIVAVVAGCMQAFLGFQAPWCILAGGVLGFLLSDTLASLGQAPFFPIEG 425          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A7S3UQA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQA1_HETAK)

HSP 1 Score: 166 bits (419), Expect = 1.010e-49
Identity = 79/128 (61.72%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQE 384
            ALPGPLFN SAYLG VYKG PGA VGW  LFGPG++LIF  LPFW  VRK+ WFK FL GVNSTAIGLV+AACV++W  A  +YAD IV +  G + +F    AP  IV GG+LGW+LS    +L Q+
Sbjct:   52 ALPGPLFNFSAYLGCVYKGFPGAVVGWCGLFGPGIVLIFAFLPFWERVRKVKWFKTFLVGVNSTAIGLVVAACVVIWQKAAKSYADTIVFLFTGALVAFFKAPAPAAIVAGGLLGWVLSGQAAALGQK 179          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A6T8FVL9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8FVL9_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.010e-47
Identity = 79/130 (60.77%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVF 390
            ++PGPLFN SAYLGAVYKGVPGA V +V LFGPGV+LIFG++PFW  +RK+ WF+  L+GVN+TAIGLV AACV+LW +AV T ADAIV V AG +  F G QAP  ++ GG+LG +L +   SL Q  +
Sbjct:  137 SMPGPLFNFSAYLGAVYKGVPGALVAYVGLFGPGVILIFGMVPFWARLRKVDWFRAALKGVNATAIGLVGAACVILWEAAVTTTADAIVFVFAGTLACFYGVQAPLVVISGGILGAILCEDAASLGQIAY 266          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A7S1GGN7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1GGN7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.030e-43
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQE 384
            ++PGPLFN S+YLGAVYKGVPGA V ++ LFGPGVMLIFG++PFW  +R + WFK  L GVN+TAIGLV AACV+LW  AV T+ADA+V  +A C+    G  APW ++ GGV G +L      L Q 
Sbjct:  168 SMPGPLFNFSSYLGAVYKGVPGALVAYLGLFGPGVMLIFGMVPFWARLRHVKWFKSTLNGVNATAIGLVGAACVILWEGAVTTFADAMVFTLALCLAVVYGIGAPWVVLTGGVFGAILHKDALGLGQN 295          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A6T7FFJ8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7FFJ8_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.590e-40
Identity = 74/131 (56.49%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVFY 393
            ++PGPLFN SAYLGAV++GVPGA V +V LFGPGV+LIF ++P+W  +R + WF+  LQGVN+TAIGLV AAC++LW +AV T ADAIV V AG +      QAP  I+ GG+LG +L D   SL Q  ++
Sbjct:  350 SMPGPLFNFSAYLGAVHQGVPGALVAYVGLFGPGVILIFAMVPYWAWLRHVPWFRSGLQGVNATAIGLVGAACIILWEAAVLTAADAIVFVFAGTLACVFNVQAPLVILAGGILGAILCDDALSLGQVPYH 480          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A6U6J7K4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6J7K4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.870e-39
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVFYPSEG 405
            ++PGPLFN S+YLGAVY+GV GA V +  LFGPGVMLIF ++PFW  +R + WF+  L G+N+TAIGLV AACVLLW +AV T ADA++  VAG + ++ G  AP+ +  G VLG +LS     L Q+ +    G
Sbjct:  328 SMPGPLFNFSSYLGAVYRGVGGALVAYCGLFGPGVMLIFAVVPFWARLRHVLWFRAVLNGLNATAIGLVGAACVLLWEAAVSTAADAMIFCVAGTLAAYYGVGAPYVVASGWVLGAILSPEAADLGQQTWCDKAG 462          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: B7G7I4_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7I4_PHATC)

HSP 1 Score: 145 bits (366), Expect = 1.030e-38
Identity = 73/135 (54.07%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVFYPSEG 405
            ++PGPLFN SAYLGAVYKGVPGA V +V LFGPGV+LIFG++PFW  +R    FK  L+GVN+TAIGLV AACV LW SA+   ADA+V  +A  M      QAP+CI+ GG++G ++      L Q+ +   +G
Sbjct:  352 SMPGPLFNFSAYLGAVYKGVPGALVAYVGLFGPGVILIFGMVPFWARLRHNDTFKAVLKGVNATAIGLVGAACVTLWESAISGAADAMVFSIALTMAVAFSIQAPFCILAGGIIGAIMHPDALDLGQQPYCVDQG 486          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A7S0F6M4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F6M4_9STRA)

HSP 1 Score: 140 bits (354), Expect = 8.880e-38
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVF 390
            ++PGPLFN S+YLGAVY+GVPGA V +V LFGPGV+LIFG++PFW  +R +  FK  L+GVN+TAIG V AACV LW SA+   ADA++   A  M    G QAP+ ++ GG++G +L +    L Q+ +
Sbjct:  232 SMPGPLFNFSSYLGAVYEGVPGALVAYVGLFGPGVILIFGMVPFWARLRHVKSFKAILKGVNATAIGFVGAACVTLWESAIIDAADAMIFCTALTMAVIFGVQAPYVVLTGGIMGAILHEDALDLGQQSY 361          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A7S2YB08_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YB08_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.090e-36
Identity = 72/135 (53.33%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVFYPSEG 405
            ++PGPLFN ++YLGAVY+GVPGA VG++ LFGPGV+LIF ++PFW  +R  A FK  L+GVN+TAIGLV AACV+LW SA+   ADA+V  V+  M      QAP CI  GGV+G +L      L Q  +   +G
Sbjct:  363 SMPGPLFNFASYLGAVYQGVPGALVGFLGLFGPGVILIFAMVPFWARLRHNAAFKAILKGVNATAIGLVGAACVILWESAIVDAADAMVFAVSLTMAIVFSVQAPICIFVGGVIGAILHPDALDLGQVPYCEDQG 497          
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Match: A0A1Z5K7W6_FISSO (Chromate transporter n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7W6_FISSO)

HSP 1 Score: 138 bits (348), Expect = 4.030e-36
Identity = 71/135 (52.59%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    1 ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRKIAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFLGYQAPWCIVGGGVLGWLLSDSVTSLAQEVFYPSEG 405
            ++PGPLFN SAYLGAVY+GVPGA V +V LFGPGV+LIF   PFW  +R    FK  L+G+NSTAIGLV AAC++LW SA+   ADAIV  +A  +      QAP CI+ GG++G L+      L Q  +    G
Sbjct:  348 SMPGPLFNFSAYLGAVYQGVPGALVAFVGLFGPGVILIFAFCPFWARLRHNQDFKAILKGLNSTAIGLVGAACIILWESAISGSADAIVFSIAFTLAVVFNVQAPLCILVGGIVGALMHPDALDLGQRAYCVDSG 482          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM24_ECTSI1.520e-7582.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UQA1_HETAK1.010e-4961.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6T8FVL9_9STRA1.010e-4760.77Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1GGN7_9STRA1.030e-4357.81Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6T7FFJ8_9STRA1.590e-4056.49Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A6U6J7K4_9STRA1.870e-3952.59Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B7G7I4_PHATC1.030e-3854.07Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S0F6M4_9STRA8.880e-3852.31Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2YB08_9STRA2.090e-3653.33Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1Z5K7W6_FISSO4.030e-3652.59Chromate transporter n=2 Tax=Fistulifera solaris T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:523871..525399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FM24
PFAMsChromate_transp
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K07240
KEGG TC2.A.51.1
Hectar predicted targeting categorysignal anchor
Exons3
Evalue2.49e-76
EggNOG OGsCOG2059@1|root,2QRJG@2759|Eukaryota
DescriptionChromate transporter
Cds size408
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866349.7643235-CDS-A-nodosum_M_contig10:523870..5240351680866349.7643235-CDS-A-nodosum_M_contig10:523870..524035Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 523871..524035 +
1680866349.7735548-CDS-A-nodosum_M_contig10:524716..5248421680866349.7735548-CDS-A-nodosum_M_contig10:524716..524842Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 524717..524842 +
1680866349.7831492-CDS-A-nodosum_M_contig10:525282..5253991680866349.7831492-CDS-A-nodosum_M_contig10:525282..525399Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 525283..525399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.53.1prot_A-nodosum_M_contig10.53.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 523871..525399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.53.1

>prot_A-nodosum_M_contig10.53.1 ID=prot_A-nodosum_M_contig10.53.1|Name=mRNA_A-nodosum_M_contig10.53.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
ALPGPLFNLSAYLGAVYKGVPGAFVGWVSLFGPGVMLIFGLLPFWGTVRK
IAWFKIFLQGVNSTAIGLVIAACVLLWGSAVDTYADAIVAVVAGCMQSFL
GYQAPWCIVGGGVLGWLLSDSVTSLAQEVFYPSEG*
back to top

mRNA from alignment at A-nodosum_M_contig10:523871..525399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.53.1 ID=mRNA_A-nodosum_M_contig10.53.1|Name=mRNA_A-nodosum_M_contig10.53.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1529bp|location=Sequence derived from alignment at A-nodosum_M_contig10:523871..525399+ (Ascophyllum nodosum dioecious)
GCTCTGCCGGGTCCCCTCTTCAACCTCTCGGCGTACCTCGGGGCTGTGTA CAAGGGCGTTCCCGGGGCGTTCGTGGGGTGGGTCAGCCTGTTCGGGCCCG GTGTCATGCTGATCTTCGGCCTCCTTCCCTTCTGGGGCACCGTGCGCAAG ATCGCTTGGTTTAAGGTACGTGCGCACGGCATGGTAAACGCGACTGCTGG AGACGGCGAGGTCTTCAGAAGCTTGCTTGCTTTGGGGCGAGGAGGGAGTT CAGGAAATGGGTCGGCGATTGTTTGAGGGGGAATTCTGGAGGTGCATCGT GTGCGAAGCACAAACATGTGCGCCGTAGTTCATTCAATCTCGGCTGTGGT GTGTGCGCACGTGTGTACGGGTTTCCCTTAGGAAACACACACACACACAT ATACAACACACACGCAGAGATTGCGCCCGGTTTTTGAACACCCTCCGCCG CCTTGTATCCACCGCCGTGAGCACCGTTCGGGGCATTTAAGTCTCTGGCG GAAAAAATTGCACCGCTCAGGGCAACTAAAGCACGCACGACGTTAACAGG ATCCCATGTTTTATTTTGTTTTTGTTTCCTTGCTATTAAACCCCTGCGGC AAACGACTGCGCGAGATTTTTTGCGGCGCCCCGAAGCAACGCCTCGGGGT CACACGCCTATGCTGAAGTCCAAGGCATTATTTACCCACCTTCGCCGCGT TATGTACGCAGCCCCTGTGGACTGTAACAGCGGTAACGTCCACAGCGTAG GTTACGCGCTAGCTCTTCCGACGTGCTTACACACCGCGAATTATTTTTTT TGTCCTCAAACGTCTCCCCTCTATCAACCCTACCCAACCCCCGCAGATCT TCTTACAAGGCGTAAACTCGACGGCGATCGGGCTCGTGATTGCGGCGTGC GTGCTCTTGTGGGGCAGCGCGGTCGACACCTACGCGGACGCCATCGTCGC CGTGGTCGCGGGATGCATGCAGGTGGCTTTCTTAACCTTTCTCTAACATC TCGGGATTTTTTTAAACCGTTTCTATCTCCTTAGGGCGCGACGTTAGCCG TTTTCACCAGGAGTTTCATCGCTTGATGGACTTCATCATGCGGTCACGTT GCAGCTTCCAGCGCGTGCAGTGGCGCACACGTCCAACTCGAACGCGCCTG AACGATCCGACTCAGGGTTGCGTCTCTCGCGTGGAACCAGCGGACTGTGA CACGCCCGCGGGGGGGGGCGTGGGGGGGGGGTCTAGAAGCAATTACTGCT GCGATTTTTCTAGAGTCTTATTTGTGCGTTTTGGGGCGTTGGGGGGGGTA AGAAAGGTCGGCGGAATGATGAGTCACAGCTTTTCCTTTCCCTCCTCCCT TCAAAATTAGTTGTGTCCCATCATGCGGCTCGCGCTTGTCCTCTCTCCTT TCTCGCCTCCAGAGTTTCCTAGGTTACCAGGCGCCTTGGTGCATCGTTGG GGGCGGGGTTCTCGGGTGGCTTCTCAGCGACAGCGTCACCTCTTTGGCGC AAGAAGTTTTCTACCCCTCTGAGGGTTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10:523871..525399+

>mRNA_A-nodosum_M_contig10.53.1 ID=mRNA_A-nodosum_M_contig10.53.1|Name=mRNA_A-nodosum_M_contig10.53.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig10:523871..525399+ (Ascophyllum nodosum dioecious)
GCTCTGCCGGGTCCCCTCTTCAACCTCTCGGCGTACCTCGGGGCTGTGTA
CAAGGGCGTTCCCGGGGCGTTCGTGGGGTGGGTCAGCCTGTTCGGGCCCG
GTGTCATGCTGATCTTCGGCCTCCTTCCCTTCTGGGGCACCGTGCGCAAG
ATCGCTTGGTTTAAGATCTTCTTACAAGGCGTAAACTCGACGGCGATCGG
GCTCGTGATTGCGGCGTGCGTGCTCTTGTGGGGCAGCGCGGTCGACACCT
ACGCGGACGCCATCGTCGCCGTGGTCGCGGGATGCATGCAGAGTTTCCTA
GGTTACCAGGCGCCTTGGTGCATCGTTGGGGGCGGGGTTCTCGGGTGGCT
TCTCAGCGACAGCGTCACCTCTTTGGCGCAAGAAGTTTTCTACCCCTCTG
AGGGTTAA
back to top