mRNA_A-nodosum_M_contig10.36.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.36.1
Unique NamemRNA_A-nodosum_M_contig10.36.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10.36.1 vs. uniprot
Match: A0A6H5L2C4_9PHAE (Cystatin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C4_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.210e-31
Identity = 57/100 (57.00%), Postives = 75/100 (75.00%), Query Frame = 3 
Query:  114 RGPLVEGPVAGGTTDITGSNDQHLAEVSQFASDHLAEENSGLHYVQMNAKVQVVAGLIYTLRYNGNDDDGVCQEERVIVVYDKPWTNERVIKSDHKAICT 413
            RGP+   P+ G   D+TGSND+HL+EV++FA+ +L E+NS L Y+Q+ A+VQVVAG++YTL Y GND  G C EER +VVYDKPW +ER +KSD    CT
Sbjct:   61 RGPVASAPLVGAKQDVTGSNDKHLSEVTEFAAKYLTEQNSELTYIQVKAEVQVVAGMMYTLHYRGNDAAGECLEERTLVVYDKPWLDERTLKSDTVTECT 160
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2C4_9PHAE1.210e-3157.00Cystatin domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:311712..314100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4555.Si003312m
PFAMsSQAPI
Model size1228
Max annot lvl35493|Streptophyta
KEGG koko:K13899
KEGG Pathwayko04970,map04970
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0002020,GO:0003674,GO:0004857,GO:0004866,GO:0004869,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005829,GO:0005886,GO:0006950,GO:0007154,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009414,GO:0009415,GO:0009605,GO:0009611,GO:0009628,GO:0009892,GO:0009987,GO:0009991,GO:0010035,GO:0010466,GO:0010605,GO:0010951,GO:0012505,GO:0016020,GO:0019222,GO:0019899,GO:0030162,GO:0030234,GO:0030414,GO:0031090,GO:0031323,GO:0031324,GO:0031668,GO:0032268,GO:0032269,GO:0033554,GO:0034605,GO:0042221,GO:0042631,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0061134,GO:0061135,GO:0065007,GO:0065009,GO:0070417,GO:0070887,GO:0071214,GO:0071229,GO:0071462,GO:0071496,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098805,GO:0104004,GO:1901700,GO:1901701,GO:2000116,GO:2000117
Exons3
Evalue8.33e-05
EggNOG OGs2CZYG@1|root,2SC50@2759|Eukaryota,37W7M@33090|Viridiplantae,3GK8N@35493|Streptophyta,3M0IN@4447|Liliopsida,3IIXU@38820|Poales
DescriptionCysteine proteinase inhibitor
Cds size408
COG categoryG
BRITEko00000,ko00001,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866349.435662-UTR-A-nodosum_M_contig10:311711..3117191680866349.435662-UTR-A-nodosum_M_contig10:311711..311719Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 311712..311719 +
1680866349.4800096-UTR-A-nodosum_M_contig10:313288..3141001680866349.4800096-UTR-A-nodosum_M_contig10:313288..314100Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 313289..314100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866349.4468153-CDS-A-nodosum_M_contig10:311719..3119111680866349.4468153-CDS-A-nodosum_M_contig10:311719..311911Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 311720..311911 +
1680866349.4553976-CDS-A-nodosum_M_contig10:312672..3128041680866349.4553976-CDS-A-nodosum_M_contig10:312672..312804Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 312673..312804 +
1680866349.4703534-CDS-A-nodosum_M_contig10:313204..3132881680866349.4703534-CDS-A-nodosum_M_contig10:313204..313288Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 313205..313288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.36.1prot_A-nodosum_M_contig10.36.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 311720..313288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.36.1

>prot_A-nodosum_M_contig10.36.1 ID=prot_A-nodosum_M_contig10.36.1|Name=mRNA_A-nodosum_M_contig10.36.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=136bp
MAEPKENMPEEKKPEEDKETLGRLTPKKISDKGWQRGPLVEGPVAGGTTD
ITGSNDQHLAEVSQFASDHLAEENSGLHYVQMNAKVQVVAGLIYTLRYNG
NDDDGVCQEERVIVVYDKPWTNERVIKSDHKAICT*
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mRNA from alignment at A-nodosum_M_contig10:311712..314100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.36.1 ID=mRNA_A-nodosum_M_contig10.36.1|Name=mRNA_A-nodosum_M_contig10.36.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2389bp|location=Sequence derived from alignment at A-nodosum_M_contig10:311712..314100+ (Ascophyllum nodosum dioecious)
TCACTGCGATGGCCGAGCCCAAGGAAAATATGCCCGAGGAAAAGAAGCCA
GAGGAAGACAAGGAGACGCTCGGTCGATTGACCCCCAAGAAAATATCCGA
CAAAGGGTGGCAGAGAGGTCCGCTTGTGGAAGGCCCTGTGGCCGGAGGGA
CAACCGATATTACTGGATCCAACGACCAACACCTTGCCGAAGTCAGCCAG
GTGGGGAAATGTTAAATGAAGTACCGTACAACTATTGAGACTGCGGCGAG
TTGAAGGAAGTACGAATTACTTCGTACGAAGTAAGATCGACGAGCCATTT
CTCTCCTAGAATCGTAACAAGGCCGTTATACATAAATATGTTTCAGACTT
CGTTGATTTCAGGCATTTAGTGCATCCTGCTCAAAGCTCTGCTCTTCCAA
ACTCTAGAAAAAACCCTCCGAGCATCGACACCTTCTTGACACGAATCGCG
GCGACGATCAAGGGGACTTTGTGCCGATCAATTGAAAGTGGGCGTTGCGT
TGGGGAACCCGCGGCGGCTTGCGATTTTCTTTCTAGAGTATATCCTGCTC
GATGTAGTATCTCTTTGTCCATTAGAGATAAACTATTATATGTCTATCAG
GTCGTAGAGTATTGCAAAATCGGAACGAAACCTGTACCCATCACCTCCAC
CAAGGCAGTCCACCTTTGACTCTTGTCTTGCGGTAGAAAGTCGATTCCAA
AACCTTCACCCCCGCGCGGCAATGGCGAGCGCGTTCTATACTGAATGACA
TCTTATTCTCGAGCAACAAGCGAGGGGCGTGTGCGTTTTCACCTCCTTCC
AAAGAAGTGCGAAGGCGGTACAGATCACATCGAGAAGCACGACGTCTTAA
ATCGCTTGTTGTTAATGATACTATATCACGTTCGTAAATTCAGTGTAATG
TTTCTTGTAGCTATGGCGCGTTCATATTTCCCCCGTGCCATACCCCCCCC
CCCCCTTGTAGTTCGCTTCGGACCATCTGGCGGAGGAGAATTCGGGGCTA
CACTACGTGCAGATGAACGCGAAAGTTCAGGTGGTTGCCGGGCTCATCTA
CACGTTGCGCTACAATGGGAACGACGACGACGGCGTGTGTCAGGTCAGCC
ATCATCGAAAATCAATGTACAAGGAGATCGTGGGAAGCAGCATTTTGCAC
CCTTGCTTTGCTCCAGGACGTCGCTCTACGGTTCACCTTATTTCCCGGGC
AGGCGTGTTGAGTGGCGCGTCCTGATGTGCACGCTTGTGGTTAGATAATT
GTTGTGGCGTCGCTAAAGAACCCTTGTGAAAGATTGCATCCAAGTCAATT
GACGCTTGCCCTACGCCGTTGGTCTTTTCTTTTTCCTACGCCTCGATTTC
GCGCCGCTGGATGTTCTCACATCTAGAGCTATGGCGTAACCTCAGTGTAA
CCAGATTATCGATCCCCGACTTCCACACGCTGACCCAAATACTTCGTATT
CGCGCACGCGCTTACTACCTTACCTTTTTCTGTTTGTATGCAGGAGGAGC
GCGTGATTGTTGTATACGACAAGCCATGGACAAATGAGCGTGTCATCAAG
AGCGATCATAAGGCGATATGCACGTGAAAGCTTCTTGCCATGAGAGACGA
AACTTCTCTTCCGCACTTCCTTTTTGAAGCTCGAAGCTGTCGCGGCGTGC
ACGTTTCCCGCTCATTCGTGCCGACGCATATTTCCTCTCTCGCGCCGACT
TACAGCTGTCTTCCGAGAAGTTGATTGCTTTCTGGAAGGGATCTGTCCGT
CTGTTTGTGTCGGTTTTGTTCACGCAATAGAGTACGTTCTGTAGTGATGC
TACGTTGGATCGAGTCCCGAGTTTTGCGCGAACCTGGATTCCCGTTCACA
CCCTCTGTAAAAATGTTGTGATTCTTAATCTACCGTACAACGCCCTAAAA
GACTGGCTGGTTCACCGGGCCAATGGATGGAGCTTCCTCGCCACAAAAAT
GTGGTTAACATGATACGGCTCAATATATGTGTAAGGAGATATTATGCAGT
AGTACCGGTAGGTGATACGGTTCGTTGGGTTGGTAAATTACCCTGCGCCA
TTTTTTCATTCGTGGCTGTCCTACCCTCTCCACGAACACTGGAGCTTTGG
AGAAATAGCATACCAGGCAATGAGGACTGAGGGAGGGATAGGGTAGCGGG
GTGCGCCCCCTTAACATTGTACTTGGAAGTCAAGGAAATGAAGCGTTCGC
TTTTGTGTATACCGAGTACCGTTATCTTCGTCTCCAGGAGGACGGGCTCA
CGCTTCTGATGTTTTCAGTCATGCTCAGACGTTCGTACTTGGCTATTTAT
AGCCTTCCGAGGACGGAGCTTGTTCGCCCTAAGTTTCATTCTGCATGCAT
ACATATGACATACGTACAGCACACGGGAAAGACCTCGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10:311712..314100+

>mRNA_A-nodosum_M_contig10.36.1 ID=mRNA_A-nodosum_M_contig10.36.1|Name=mRNA_A-nodosum_M_contig10.36.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at A-nodosum_M_contig10:311712..314100+ (Ascophyllum nodosum dioecious)
ATGGCCGAGCCCAAGGAAAATATGCCCGAGGAAAAGAAGCCAGAGGAAGA
CAAGGAGACGCTCGGTCGATTGACCCCCAAGAAAATATCCGACAAAGGGT
GGCAGAGAGGTCCGCTTGTGGAAGGCCCTGTGGCCGGAGGGACAACCGAT
ATTACTGGATCCAACGACCAACACCTTGCCGAAGTCAGCCAGTTCGCTTC
GGACCATCTGGCGGAGGAGAATTCGGGGCTACACTACGTGCAGATGAACG
CGAAAGTTCAGGTGGTTGCCGGGCTCATCTACACGTTGCGCTACAATGGG
AACGACGACGACGGCGTGTGTCAGGAGGAGCGCGTGATTGTTGTATACGA
CAAGCCATGGACAAATGAGCGTGTCATCAAGAGCGATCATAAGGCGATAT
GCACGTGA
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