mRNA_A-nodosum_M_contig10.34.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.34.1
Unique NamemRNA_A-nodosum_M_contig10.34.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: D7FM28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM28_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.340e-27
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   59 MEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKGGFKHKDNGLPKNGLYSYFVKPGHFRTTFDDS 250
            MEDSKLQRLHDTLKKLAPKGNHGGLGSA L KGGFK +DNGLPKNGLYSYFVKPGHF+TTF DS
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVKGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADS 64          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: A0A6H5L1A4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A4_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.970e-27
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   59 MEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKGGFKHKDNGLPKNGLYSYFVKPGHFRTTFDDS 250
            MEDSKLQRLHDTLKKLAPKGNHGGLGSA L +GGFK +DNGLPKNGLYSYFVKPGHF+TTF DS
Sbjct:    1 MEDSKLQRLHDTLKKLAPKGNHGGLGSAGLVRGGFKQRDNGLPKNGLYSYFVKPGHFKTTFADS 64          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: A0A835ZCI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 6.610e-14
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   59 MEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKG-GFKHKDNGLPKNGLYSYFVKPGHFRTTFDDS 250
            MED KLQ+LHDTL KL P GNHG LGS S   G G  H+DNGLPKNGLYS+FV+ GHF+  F DS
Sbjct:    1 MEDWKLQQLHDTLAKLRPTGNHG-LGSRSQTTGIGHAHRDNGLPKNGLYSFFVREGHFKKKFADS 64          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: A0A7S2ASD9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ASD9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.100e-10
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   50 LSGMEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKGGFKHKDNGLPKNGLYSYFVKPGH 226
            L  MED KLQRLHDTLK LAP+G  GGLG   L  G  K +D+GLP+N LY+ FV+ GH
Sbjct:    4 LRRMEDEKLQRLHDTLKLLAPRGRVGGLGYGKLGAG--KKRDDGLPQNALYANFVRAGH 60          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: A0A7S2V6B0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6B0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.510e-9
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 2
Query:   50 LSGMEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKGGFKHKDNGLPKNGLYSYFVKPGH 226
            L+ MED KLQ+LHDTLKKLAP+G  GGLG +S  K   K  D+ LP N LY+ FV+ GH
Sbjct:    4 LNDMEDWKLQQLHDTLKKLAPRGKVGGLGYSSFHKQSKKRSDD-LPNNALYANFVRAGH 61          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: K8YXB4_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXB4_NANGC)

HSP 1 Score: 68.9 bits (167), Expect = 6.770e-9
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 2
Query:   59 MEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKGGF--KHKDNGLPKNGLYSYFVKPGH 226
            MED ++QRLHDTL KL P+G  GGLG  S    GF  K  D+GLPKNGLY+YFV+ GH
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNS----GFGPKKTDDGLPKNGLYAYFVRAGH 54          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: A0A482SMS7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMS7_9ARCH)

HSP 1 Score: 61.6 bits (148), Expect = 7.500e-7
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 2
Query:   59 MEDSKLQRLHDTLKKLAPKGNHGGLGSASLAK-GGFKHKDNGLPKNGLYSYFVKPG-----HFRTTFDDSS 253
            MED KLQRLHD L KLAPKG+ GGLG  S A  G   H+D  LP+  LY+ FV+ G     + +  F+D++
Sbjct:    1 MEDDKLQRLHDALAKLAPKGHSGGLGLGSRALLGKVAHRDPTLPQTPLYANFVRAGSCIGQYHKKNFEDNN 71          
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Match: A0A7S4E4Z6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4Z6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.990e-5
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:   59 MEDSKLQRLHDTLKKLAPKGNHGGLGSASLAKGGFKHKDN---GLP--KNGLYSYFVKPG 223
            MEDSKLQ+LH+TLK LAPKG  GGLG    AK G + + +   G+P  K  LYS+FV+ G
Sbjct:    1 MEDSKLQKLHETLKALAPKGKVGGLGF--YAKAGHRSRRSAADGMPEDKRALYSFFVRAG 58          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FM28_ECTSI2.340e-2790.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1A4_9PHAE5.970e-2789.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZCI6_9STRA6.610e-1467.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2ASD9_9STRA6.100e-1061.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2V6B0_9STRA4.510e-959.32Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
K8YXB4_NANGC6.770e-962.07Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A482SMS7_9ARCH7.500e-749.30Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4E4Z6_9STRA2.990e-555.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:301679..310506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1695
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_010440.1
Cds size1038
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.34.1prot_A-nodosum_M_contig10.34.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 301679..303539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866346.7528563-CDS-A-nodosum_M_contig10:301678..3024431680866346.7528563-CDS-A-nodosum_M_contig10:301678..302443Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 301679..302443 -
1680866346.7646523-CDS-A-nodosum_M_contig10:303266..3035391680866346.7646523-CDS-A-nodosum_M_contig10:303266..303539Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 303267..303539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866346.775665-UTR-A-nodosum_M_contig10:303539..3035461680866346.775665-UTR-A-nodosum_M_contig10:303539..303546Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 303540..303546 -
1680866346.7867653-UTR-A-nodosum_M_contig10:303761..3039101680866346.7867653-UTR-A-nodosum_M_contig10:303761..303910Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 303762..303910 -
1680866346.7972026-UTR-A-nodosum_M_contig10:304074..3043791680866346.7972026-UTR-A-nodosum_M_contig10:304074..304379Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 304075..304379 -
1680866346.8061702-UTR-A-nodosum_M_contig10:304676..3047461680866346.8061702-UTR-A-nodosum_M_contig10:304676..304746Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 304677..304746 -
1680866346.8143408-UTR-A-nodosum_M_contig10:310382..3105061680866346.8143408-UTR-A-nodosum_M_contig10:310382..310506Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 310383..310506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.34.1

>prot_A-nodosum_M_contig10.34.1 ID=prot_A-nodosum_M_contig10.34.1|Name=mRNA_A-nodosum_M_contig10.34.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp
MAARTPISTVVESLSPTRKGVAGEQRRAATLLRRMELPTLPLPRRTEFPP
RQSRSGAALLRKAISRVARKKEKSLRLKIKERSSPRALRARDLTKDKGAN
KKNKGGGCGKKEDEDQKEGVGEDGSVLALKSTGKRKRKKSTKSTAWSPSL
PNLNGAAPTRAANRTRPLISAVDDDTKGGDGGEDTNLNRGGKLKPHKERG
SRRTTPSGDAATVNGTTNGDAGKRAQGKRKGEVQNVGDPVTPKLKKVKKD
EKKGASEEKTSKVNKKKRKKDEDTGDDDAGDDGASSGIVKVRKRPKIKSS
TVGAGEGREEEARFDSGSDEEGRTREGGGGKKRKRVKDDRSQGEAK
back to top

mRNA from alignment at A-nodosum_M_contig10:301679..310506-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.34.1 ID=mRNA_A-nodosum_M_contig10.34.1|Name=mRNA_A-nodosum_M_contig10.34.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=8828bp|location=Sequence derived from alignment at A-nodosum_M_contig10:301679..310506- (Ascophyllum nodosum dioecious)
GTCTCAGCCACTACCTAATCTGCTTTTATACGATCTAATAGTCTAAAGCC TGTCAGGTATGGAAGACTCCAAGCTCCAGCGACTTCATGATACGCTCAAG AAGCTCGCGCCTAAGGGAAACCACGTGAGTCTTTGGTGACGCGGCGGTTT GAGCTGTGCCTTCAGTTTCAGTTTTTGATTTGTACGGCTAGTTAGTACCT GTCTTGTAGCCCTGGACTGGAAACTAGGTTGGGTTATGATCCATCACGGG GCTTGAGTGCATCGCAGAGTGATCCTTTGTGGGAATGCTTTCTGGGGAGC GAGCGACCCCGTGCTGGTAGAGCTTATGGTGCGCTTACGACGTTGTTTTC TAGCGAAAATCACGAACGAGCTTTGCCAAGATACTGCTGGTCTACACACA CCATACCGGTACACCTCTGGGCATCAACAACGTGCCGTGTTTCCGTTCGC GCCTGACTACAGACGAGGCTCCCACTAGCGTTAATTCGTTTTTTTAGATA CACGGCGCTCGTAGGACACTCGATCATAGGTTTAAAGAAAAATCTCAACA CATTCAAACCTTCTGAGCCTCCACCCGTTCAGGAGGGAAAATTAAAAAGT TTTGGTGGGAACATACGTTGTTCCTTCCCCGAGGATTCCGATTAGCACTT GTATCCCCTTCAGAGCAGTGTAAATAGATCGTACACACGGGTTTGGATAC CTACCCCATGGAAGTGTTTGGCTGAGGTGAGTTGAGGGGTCGGCCTAGGT TTCGATCAAGCTTAAAGAAACATTTGAGCGCATTTTAACCTTCCGAGGAT CCACACAGTCAAGGAGGAAAATTGTGAAAGCATTTCGGTGGGAAGATTGG TTGCACGGACAAAAACTCTTCTCACCATTGTAATATTGGGCTGAAACCCA CTGTTATAATGGGTCCGTGGTGACCTGCAAAATGGCAGCACCCGTTACTG GAACTACCTTGAGGACTTCTGGCCCTGTGCCGGCGGATTCTCGGCAGTGA ACGCCATCGGCACGCAATTGCGTGACCCGATAAACTCGGGACTGGCCCGA TGGCGCATGGCGGTTTAAATTTATAAATGGACACCGCCGCGGAAATCGGG AGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTACCGAGAATGAGC AGACTGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAGACCAAATTCT CAGGCGCGTACGGGGACAGGGGAATATTCATTCTCCATGTTCAGCTGATC ACGAGCAGGATTGGCAACCTTGCCCAGTTGATCCATACTCTGCTACATGT GATGGACATACATACATGCATACTGTAAGTACCAGCCAGGTACACCAAAA CTGAGGCAATAACACGAATAATTGGAAGGTTTAGATGCGTTCAGATTTTT CTCTAAACACACGATGGACCTGGGGATATAACTCAGTTGTGTTGTACGAA GTGCGATATTGAGTCTGGGATCGGGTCCAAATATCGGTGAATCGGAGTCG ATTGTAGAGTGTAAACGTATGTTCAGTATTATTATTAATAGTAAGTTTTC CAACGACCATTAGGGGGATAATAATTAATAATGACATTAGAGCTATATCG TTAGCTACTACGAGTGAAGAAAAGAACCTTGCAGTATGTATGTATCTATG TATGGTCATCACATATAGCAGAGGATAGATAAACCGGGTAAGGTTGCCGA TCCTACTCGTGGTCAGCTGAGCAGGGAAAATGAATATTCCCCTGTCCCCG TACGTGCCTGAGAATTTGGTCTCGCGAGACAGGTTCAGCCGTCCCGCGTC AGCCTGCTCATTCTCCATGCTCAGACTGAATCTGGTGCTTACTTGCGGGA TTCCTCCCGAGCCCCGCGGCGGCGTCCATTTATTTATTTTAAAACCGCCA TACGCCATCGGGTCAGTCCCGAGATTATCGGGTCACGCAATTGCGTACCG ATGGCATTCACTGCCGAGAGTCCGCCGACACAGGGCGTAAACCTCAAGGT AGTTCCGAACGAGTGCTGTCTTGGCAGGTCACCATGGACCAATTAGCATG CGCCTATCTTTCCCACACCCACTATTGGTATGTAGTACCGTAGAAGGCCT AAGTCCCGACCTCCCGATTGAAGCAGAGGACTCCAATTATTTGATCAAGT AAATGGGGTGTTTGTCTTTCTATTAGATTTACGTGAAACAATGGTTATTA ATAGAGCTATCATAACTAGTCTAAGTCCTTCAAACTTATTTCTGCCAATA TGCTGAGAGCCGGTCGCCCCGGTAGCTCAGAGGTAACCTCGTAACCTTCT GAGACGTTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTATCACTA AAAAATAAAAATGAAAATGCCCAACGAGTGGACAACGATTAAATCGTTAG TACACAAAATTCGACTTCACGGTCGACGAGGGAAAGAAATGGCTGAATCC TTCTCGCGAGAAAAATGAAGGCACGCACCGCAGAAGGAAGGTGGATAAAA AATCCTGTGTGATGTCCAGAATGAATGGGCAGAAAACACACACACACTCA CAGACGAATATTCAGGTTAGGACACTAAAGGCGATAACAGATCATATAGC CCCAGTATCTACGTTCAGTTGCCCCATGATCGTGGAGGGAGTTTTCTGTT TCGTCACCCGTTCGCTGAACACGTCTCATGTCTCATGTCTTCAATCCGCC GCTACGGATGTTGAGGAACTGCTTGACAACACTGAAAGTTCTCTGTTTCT AGCCTCGTAGCACTTCAGTCTTAAAAAAATCTAAATTCACGGCTTGCTTG CCAACTGTCGCTGTACTCCAACCGCCATGACAACCCCGAACATCCACGCA GGGTACGTAGTGTGTCTAAAAGAGCTACCGATGTCAGCAGGAAGCTTCCA TTTATCGAAGAGCATTGAGCCATTTTCCCCAAGGATGTGTCGCAAGAGGC CGTCCTGTTGTATCAAGCAGCACTTATAGTGCGTTAGCTAGTGGTACAAG TAAATGGGAATACGTTTCTGGCAGTAGAGCTGTTCATTGAGGAGGGGTCG ATAATTCTTGGGGTAGGGGGATTCTGGTCGAGGATCGCGTTTTCCAAAAA CAAGCACGGTATAAAATACCTCAACAACACTTAAGACACTTCATCTTGAA CCGGAGGGATATTCCCGGATCGCGCTCCGCAGACGTATGTACCAGATGTA CCGCGGTAAATAAAGCCTTGCCAGATCCAATCGGTAATTCTTCAATTGAG TGTACTGTACGGTAAAGATTTTGTCCGAAGAAAAGCCTGGGAAAAATGTA TCACACAAATTCGTCCCAAGCAAATGAAATCCGAAAACGTGATACAGTAA CTATTATACTGTATAGATCACCAATCCGTAAACGTACGAGTACCACATTC AAGATTCTTCAGAAGATTTTTACAGAGAGAGAGAGAGGGAGAGGGTGTAA AGGGAAAGGAAGGGAATCCAGGTGCGCGCAAAATTCGAGCTCGAACTCGA CCGATATCATGTCGCGGTCGCCTGCGAGATCTCCGCCCCCCGTCAAGCGC ATACATTTCTATACATTTTTATACAGTTTTTAAAGCGACATGGTTTTAGC CCTCGACTGTTGCAACACCTTAGACATGTACTGTTGTTAGCTATTGGTAG GATATAAGCTTGTGGCCCCGGGACTCGTGTACTTTCCTTGTTAATTTAAG TTCCCATGTCCCACAAGAAAACAACACCGCTCAATTTTCAAAACGTTGCC CACAAGGCAGGCTCGGGGCTAAATATATACCAGGTAGACTATATACAGTA TACAGTATACAGTATAACCTCTAGAGCTGTTAATAGCACGACGATGTCCC CTGGGAATCTGACATGTGTGTTTGTGGGCACGGATGTTTGTGAGAGGATT CTCACCATTTACTTTACAAGTTGGGGCAACAATGAAAAAAGCGTTGGATG CTCGGATTCAAAAATCAACGACAACCATTTTAGAACTTGTGGGATTTGTA TCATAACTCTGCTCTATGTGTAATGGCCGTACATGCTCTCCACACTTTTG ACCATACATGCCCCTTAGCCCTCCTCTTAACATTGAGAGCTATTGATACT AATATTAATACTAATATTAATACTATGGTAGAGCATTACTAATAATAGTA TGAATATTTACTGTCTAATACCATACGTTTAGTCTAATAACGGGTTGATT TCCGGCTACACTATTGTTTGATTAATTATACTACTAATAATAAAAGATTA AGTCGTGAGGACCGGAAAGTCCCGGCACTTTCGCCCCTTGCCTTACACCA CACTAATTACTATACATTTGTTTTATTTTTGAACTAATGACCCTCAGTCG AACATGCACAAACCACGCTGTGAACTGTTTTCTAGAGGTCTTCCATCACC AATACTGTACTCCATCCGCCGGTACTTTCAACATGCCCACTTCATACCAA TAGTGGGTATGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCTG CCAAGGCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGGCCCTGTGCC GGCGAACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGAT AAACTCGGGACTGACCCGATGGCGTATGGCGGTTTCATAAATGGACGCCG CCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAG TATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGC GAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTCATTTTCCC TGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATA CTCTGCTATATGTGATGACCATACATACATACATACATACATACATACTC TGTCGAAGGGAATCCAGGACCCCTATTTCGTGGGAATCGAGGAAAACCTC CTCCGGTCGCGCACCCTGGGACTCGAACCTACGACTAACTATTAATACCT ACTATTAATGGAGGTGCCGGGTATTAACTCTAATCCACTATTATAATTAG CAGGCTTTTGCTTGTCAGCGCTGTCTGTTTACTGCAATGGGTTAATTTCC GGCTGTTAATATTTATGGTAGAGAGCCTAGAGCCTGCAGAGTCTGAATAG TTTTTTATTTCCCCTTCTTTAATCGAAAAATTGTTGAAAGCAGGTAGAAA AAAACTGTGACCGGACCTTCCCTCGCTTGTCATTTCAACTGTGCCAAGGA ACAGTAGTTCTAGAGCTGTGCACCTAATCGCGCTGCCTGAAATGTGTTCG GCGCGTTTGCTTTTGTTTTTGTCCTCCTTGGTAAGAAATCGTTGTTGTTC GAATGCGGCCACCTTTCCACACCACGGGCGACCACCTTTGATCCGCTCAT GTCGCCCTTATATTGAACACGGCAAGAAAAATAGAAAAGAGAGAGAGAAA GAGAGAGAGAGCACATCGCTCACATGTTTGGAAGGTTTTTCATTTTTGGC TAGTCCACCAAGTCGTTCGACTTTCGCAGCCCCTCTGCCCAAACACCAGT ACGGCGCCATGGGCTTCTGCTCTTTAAATAATGGGAGCGGGGGGCGCTCG AAGAGTTATTCGCACAGCAGGACCACATTGGTAGTTAGTTGATGGAAGCA TGGACCCTCATGTATTTGGTAAGGTGACTTGCCGAGCTAGAAACGCGGCC GTGTGCCTTCCGAAATGAAATAAGACCCCTTCCATCAACGAAACGTGCGC TTCGTTCCAGGGCGGTCTCGGGAGCGCGAGTCTCGCGAAAGGCGGGTTCA AGCACAAGGACAACGGTCTTCCCAAGAATGGTACGAGTACAAATGGTGGT TGTTCCCGTGGTCTCTAGTTAACTAACCCTCACACGACACGCCTTGGCAC TCTCGTCAGGCGTGGCATGTTTCGAGAAAAAAACAAAACTGTGGCGTAAG CCCGAAACCTCGAAACTTCCGCACTAACTGTTGGTCCTGTTGCAAAACTC TCGAAACCTGTTGCGGTCGAACGAGGCGCTGTAACCCCTTGAGAAAAGGC TTCCTTACCCCCCCCCCCCCTCGAACCCCCTAAAACTCCGGTGGGTCACC TGGGTATCCCAACGATGCGCGCGACAGGCCTCTACTCGTACTTCGTCAAG CCGGGGCACTTTAGGACGACGTTCGACGACAGCAGCAGCAGCAGCAGCGA CGCCGATAGCGAGAAAAAGGCGGCTAGGAAACTGAAGCGGCGGCAAGAGA AGGAGGCCAGAAAGGCGGAAAAGAAAGCAAAAAAGAAGCGGGAGAAGGAT ACGAGTGCGGGGAGCGAGGACAAAGGTGGCAGTAGCGGTCCGGAGGGAAC AAGCGCGTCCCAAAACGAAGGCTTACGGCGGAAGAGGAAATCGAAGGGAT CGTCTGCCTCTTCCGCGGCGAACGGAATTCCCACCGAGACAATCGCGAAG CGGCGCGGCGCTGCTGAGGAAGGCGATCTCGCGGGTGGCGAGAAAAAAGG AGAAAAGTCTAAGGTTAAAAATAAAAGAAAGAAGCAGCCCAAGGGCTCTG AGAGCGCGAGCTCTGAGAGCGGTGTCGTTGTGACGGATGAAGGAGTCGGA AGGAACGAGGAGAGCAGGAAGAAGGCGCGCGGGAAGCGAACAGCGAAGGT AGAAGAGGAGCTGGGTGGGGGCGTGAGTGCTAAGGTTAAGAAGAAAACGA AGGACCTGGCCAGGGACAAGGGAGCCAACAAGAAGAACAAGGGCGGCGGC TGTGGGAAGAAGGAAGATGAGGACCAGAAAGAGGGAGTTGGAGAGGACGG AAGCGTTCTCGCGTTGAAGAGCACAGGAAAACGGAAAAGGAAGAAATCTA CGAAATCTACCGCGTGGTCTCCTTCTCTTCCGAATTTGAATGGGGCTGCC CCCACGAGGGCAGCCAATCGGACACGGCCCCTTATTTCTGCTGTGGATGA TGATACAAAGGGCGGTGATGGCGGCGAGGACACCAATCTCAACCGTGGTG GAAAGCTTAAGCCCCACAAGGAAAGGGGTAGCCGGCGAACAACGTCGAGC GGCGACGCTGCTACGGCGAATGGAACTACCAACTCTGCCTCTTCCGCGGC GAACGGAATTCCCACCGAGACAATCGCGAAGCGGCGCGGCGCTGCTGAGG AAGGCGATCTCGCGGGTGGCGAGAAAAAAGGAGAAAAGTCTAAGGTTAAA AATAAAAGAAAGAAGCAGCCCAAGGGCTCTGAGAGCGCGAGCTCTGAGAG CGGTGTCGTTGTGACGGATGAAGGAGTCGGAGGGAACGAGGAGAGCAGGA AGAAGGCGCGCGGGAAGCGAACAGCGAAGGTAGAAGAGGAGCTGGGTGGG GGCGTGAGTGCTAAGGTTAAGAAGAAAACGAAGGACCTGGCCAGGGACAA GGGAGCCAACAAGAAGAACAAGGGCGGCGGCTGTGGGAAGAAGGAAGATG AGGACCAGAAAGAGGGAGTTGGAGAGGACGGAAGCGTTCTCGCGTTGAAG AGCACAGGAAAACGGAAAAGGAAGAAATCTACGAAATCTACCGCGTGGTC TCCTTCTCTTCCGAATTTGAATGGGGCTGCCCCCACGAGGGCAGCCAATC GGACACGGCCCCTTATTTCTGCTGTGGATGATGATACAAAGGGCGGTGAT GGCGGCGAGGACACCAATCTCAACCGTGGTGGAAAGCTTAAGCCCCACAA GGAAAGGGGTAGCCGGCGAACAACGTCGAGCGGCGACGCTGCTACGGCGA ATGGAACTACCAACTCTGCCTCTTCCGCGGCGAACGGAATTCCCACCGAG ACAATCGCGAAGCGGCGCGGCGCTGCTGAGGAAGGCGATCTCGCGGGTGG CGAGAAAAAGGAGAAAAGTCTAAGGTTAAAAATAAAAGAAAGAAGCAGCC CAAGGGCTCTGACAGCGCGAGCTCTGAGAGCGGTGTCGTTGTGACGGATG AAGGAGTCGGAGGGAACGAGGAGAGCAGGAAGAAGGCGCGCGGGAAGCGA ACAGCGAAGGTAGAAGAGGAGCTGGGTGGGGGCGTGATTGCTAAGGTTAA GAAGAAAACGAAGGACCTGACCAAGGACAAGGGAGCCAACAAGAAGAACA AGGGCGGCGGCTGTGGGAAGAAGGAAGATGAGGACCAGAAAGAGGGAGTT GGAGAGGACGGAAGCGTTCTCGCGTTGAAGAGCACAGGAAAACGGAAAAG GAAGAAATCTACGAAATCTACCGCGTGGTCTCCTTCTCTTCCGAATTTGA ATGGGGCTGCCCCCACGAGGGCAGCCAATCGGACACGGCCCCTTATTTCT GCTGTGGATGATGATACAAAGGGTGGTGATGGCGGCGAGGACACCAATCT CAACCGTGGTGGAAAGCTTAAGCCCCACAAGGAAAGGGGTAGCCGGCGAA CAACGCCGAGCGGCGACGCTGCTACGGTGAATGGAACTACCAACGGTGAT GCGGGAAAGCGAGCGCAGGGGAAACGTAAGGGAGAGGTGCAAAACGTCGG TGACCCCGTGACCCCAAAGTTAAAAAAGGTCAAAAAGGATGAAAAGAAAG GTGCGTCAGAGGAGAAGACGTCAAAGGTGAACAAGAAGAAAAGGAAGAAG GACGAGGACACCGGTGATGACGACGCAGGCGATGACGGGGCGTCTTCCGG CATCGTGAAGGTTAGAAAGAGACCCAAAATCAAGAGCTCCACTGTAGGGG CTGGTGAGGGTCGCGAGGAGGAGGCGAGGTTTGATAGTGGTAGCGACGAG GAGGGCCGAACGCGAGAGGGCGGGGGGGGTAAGAAGAGGAAGAGGGTGAA GGACGATAGGAGTCAAGGGGAGGCGAAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10:301679..310506-

>mRNA_A-nodosum_M_contig10.34.1 ID=mRNA_A-nodosum_M_contig10.34.1|Name=mRNA_A-nodosum_M_contig10.34.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1038bp|location=Sequence derived from alignment at A-nodosum_M_contig10:301679..310506- (Ascophyllum nodosum dioecious)
ATGGCGGCGAGGACACCAATCTCAACCGTGGTGGAAAGCTTAAGCCCCAC
AAGGAAAGGGGTAGCCGGCGAACAACGTCGAGCGGCGACGCTGCTACGGC
GAATGGAACTACCAACTCTGCCTCTTCCGCGGCGAACGGAATTCCCACCG
AGACAATCGCGAAGCGGCGCGGCGCTGCTGAGGAAGGCGATCTCGCGGGT
GGCGAGAAAAAAGGAGAAAAGTCTAAGGTTAAAAATAAAAGAAAGAAGCA
GCCCAAGGGCTCTGAGAGCGCGAGACCTGACCAAGGACAAGGGAGCCAAC
AAGAAGAACAAGGGCGGCGGCTGTGGGAAGAAGGAAGATGAGGACCAGAA
AGAGGGAGTTGGAGAGGACGGAAGCGTTCTCGCGTTGAAGAGCACAGGAA
AACGGAAAAGGAAGAAATCTACGAAATCTACCGCGTGGTCTCCTTCTCTT
CCGAATTTGAATGGGGCTGCCCCCACGAGGGCAGCCAATCGGACACGGCC
CCTTATTTCTGCTGTGGATGATGATACAAAGGGTGGTGATGGCGGCGAGG
ACACCAATCTCAACCGTGGTGGAAAGCTTAAGCCCCACAAGGAAAGGGGT
AGCCGGCGAACAACGCCGAGCGGCGACGCTGCTACGGTGAATGGAACTAC
CAACGGTGATGCGGGAAAGCGAGCGCAGGGGAAACGTAAGGGAGAGGTGC
AAAACGTCGGTGACCCCGTGACCCCAAAGTTAAAAAAGGTCAAAAAGGAT
GAAAAGAAAGGTGCGTCAGAGGAGAAGACGTCAAAGGTGAACAAGAAGAA
AAGGAAGAAGGACGAGGACACCGGTGATGACGACGCAGGCGATGACGGGG
CGTCTTCCGGCATCGTGAAGGTTAGAAAGAGACCCAAAATCAAGAGCTCC
ACTGTAGGGGCTGGTGAGGGTCGCGAGGAGGAGGCGAGGTTTGATAGTGG
TAGCGACGAGGAGGGCCGAACGCGAGAGGGCGGGGGGGGTAAGAAGAGGA
AGAGGGTGAAGGACGATAGGAGTCAAGGGGAGGCGAAA
back to top