mRNA_A-nodosum_M_contig10.23.2 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A6H5L0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E2_9PHAE) HSP 1 Score: 145 bits (365), Expect = 3.240e-31 Identity = 225/536 (41.98%), Postives = 256/536 (47.76%), Query Frame = 2 Query: 1304 RSAELQTEQQRLRQAIADRRTASILLGMSG-TDDSHAGVQASNTSRGQ----------GQSFGGVGAHNPPQRMLLA-LECDDVGEGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSDGALGGEDATGVKRVGEADGQPKVGNPGDTERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAIGTCDVVGGGANTG--------------PGYPVAAAVSAGPAGVAAAALASGTRTASVSPEAGVAGFEHPPCRAPPLVTPQ----------HAVAQ-----AHQVHSPPHPPSHQFANHA-FLHHGA--HMQPQFRRHGMYP--QHHVPAGPHLLQPVGAQHMGYYTQGSAGFSGGAVGSVGADV--NGARMVKPHSCTYDVSGGRMVPVSFVGHSGAHYP----QQHSVVQLSDSNSPFSPAQGKPP--------------VLPSPPQTHVAYPLPEPSEGYQGVDG----QGQGA-GPPSYVSWASAS 2698
RSAELQ EQ+RLRQAI DRRTASILL MSG T+DS S G G+ P ML +E DD G+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+VGNPGD ERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATE MIARLE EN+KL + ++ V GGG + G + G G A AA ++ S +P + F ++ P H+ H H PPH QFANHA FLH A H+ P H +YP QH V G H Q VG G+ G G GA + GAD NG +VK ++ H G P HS Q S + PA PP + P P H AYP+PEP G QG+G G +V WASAS
Sbjct: 382 RSAELQAEQKRLRQAITDRRTASILLDMSGGTEDSQXXXXXXXXXXXXXXXXXXXXALAASVSG-GSSRPRAGMLRGNVESDDAGDGSESTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXPRVGNPGDAERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEEMIARLERENRKLRDIMKT----SVSGGGGGSXRXGGISRXXXXXXXXGLKSDGSDRKGFDGGADAASSTAKMNLSPTPMGHMPNFLSQQQQSTPXXXXXXXXXXXXXXXHSAGSPHFGAGHHAHPPPHLMQ-QFANHAAFLHPAAAAHLPPHLHGH-VYPSPQHFVHPG-HSQQQVGYYPQGFDCVGGPGACAGAGSAAGADGAGNGNSVVKQEGQN-----------PYLQHQGVSAPPGGMMPHSNPQYLISYQGWPPATYGPPPAGALAGKLTPMLALPPHDPHQH-AYPVPEPGAAALGYASWHASQGRGGPGTTPFVPWASAS 888
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: D7FM31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM31_ECTSI) HSP 1 Score: 135 bits (340), Expect = 2.520e-28 Identity = 147/241 (61.00%), Postives = 157/241 (65.15%), Query Frame = 2 Query: 1304 RSAELQTEQQRLRQAIADRRTASILLGMSG-TDDSHAGVQ------------ASNTSRGQGQSFGGV---GAHNPPQRMLLA-LECDDVGEGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSDGALGGEDATGVKRVGEADGQPKVGNPGDTERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAIGTCDVVGGG 1975
RSAELQ EQ+RLRQAI DRRTASILL MSG T+D +G S SR + GA P ML +E DD G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+VGNPGD ERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATE MIARLE EN+KL +S++ V GGG
Sbjct: 329 RSAELQAEQKRLRQAITDRRTASILLDMSGGTEDLQSGXXXXXXXXXXXRNAGSKASRDHHVALAASVSGGASRPRAGMLRGNVESDDAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXXXXXXXXPRVGNPGDAERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEEMIARLERENRKLRDSMKT----SVSGGG 557
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A6U2ACZ3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2ACZ3_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 7.580e-10 Identity = 70/220 (31.82%), Postives = 94/220 (42.73%), Query Frame = 2 Query: 1304 RSAELQTEQQRLRQAIADRRTASILLGMSGTDDSHAGVQASNTSRGQGQSFGGVGAHNPPQRMLLALECDDVGEGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSDGALGGEDATGVKRVGEADGQPKVGNPG-----DTERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI 1948
R+ EL+ EQ RL+QAI ++ TASILLGM D +G A + NP LL +++ + N + + A G +G P++G D EL K RS+CTP EL++IRRERNRMHAKRTRDRK++ +E E MI +LE EN L LE +
Sbjct: 56 RADELKNEQLRLKQAINEKNTASILLGMFSRDGPASGGSAKDV--------------NPKVEELLRRSAEEIPDASK----------------------IPELPALILPGQHNSKKNKAAAQMQPPAAAAPLDGGGLEGSPEMGPQHGGLMPDDGIDYELLSKDRSKCTPAELDRIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLESENGLLQGHLEGL 239
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.660e-9 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 1724 PKVGNPGDTERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI-GTCDV 1963
P GNP D EL K RS+CTP EL++IRRERNRMHAKRTRDRK++ +E E MI +LE ENQ L L ++ GT V
Sbjct: 134 PVAGNPNDGIDY-ELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNSLDGTSSV 213
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A7S2RAP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAP5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.230e-9 Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 2 Query: 1760 LELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI 1948
LEL +K RS+CTPEELEQIRRERNRMHAKRTR RKK LE + IA LE++NQ+L+ + I
Sbjct: 445 LELMKKDRSQCTPEELEQIRRERNRMHAKRTRVRKKAQLEDIQETIASLEKQNQELMRRVSRI 507
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 4.280e-9 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 1724 PKVGNPGDTERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI-GTCDV 1963
P GNP D EL K RS+CTP EL++IRRERNRMHAKRTRDRK++ +E E MI +LE ENQ L L ++ GT V
Sbjct: 134 PVAGNPNDGIDY-ELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNSLDGTSSV 213
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 6.350e-9 Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 1724 PKVGNPGDTERLLELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI-GTCDV 1963
P GNP D EL K RS+CTP EL++IRRERNRMHAKRTRDRK++ +E E MI +LE ENQ L L ++ GT V
Sbjct: 306 PVAGNPNDGIDY-ELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEMEVMIKQLEGENQVLQSHLNSLDGTSSV 385
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A7S2L7Q6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L7Q6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 6.510e-9 Identity = 67/218 (30.73%), Postives = 100/218 (45.87%), Query Frame = 2 Query: 1304 RSAELQTEQQRLRQAIADRRTASILLGMSGTDDSHAGVQASNTSRGQGQSFGGVGAHNPPQRMLLALECDDVGEGGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSDGALGGEDATGVKRVGEA-DGQPKVGNPGDTERLLE--LSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI 1948
R+ EL+ EQ RL+Q I ++ TA+IL+G+ T + A S+ + + +P +LL +++ + +S+DGA ED T A DG+ G+ E ++ L K R CTP EL+QIRRERNRMHAKRTRDRK++ +E E MI +LE+EN L ++ +
Sbjct: 42 RADELKLEQIRLKQCINEKNTANILVGLFQTGEDSAAADGSDDTET-------AVSMDPQVEVLLKRPTEEIPDASK--------------------IPELPALILPGQHTKRKSSSSNDGAS--EDNTPTAAAAPAADGEGVTIPEGEQEDGIDYVLLGKDRGSCTPAELDQIRRERNRMHAKRTRDRKRIFMEEMETMIKQLEDENALLQGHMDKL 230
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A7S0GDP0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDP0_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.300e-7 Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 2 Query: 1775 KTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKL 1927
K RS CT EEL++IRRERNRMHAKRTRDRK++++E EG+I RL+EEN L
Sbjct: 126 KDRSTCTSEELDKIRRERNRMHAKRTRDRKRVYMEEMEGLIDRLQEENDIL 176
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Match: A0A1Z5JIQ7_FISSO (BZIP domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIQ7_FISSO) HSP 1 Score: 65.5 bits (158), Expect = 1.960e-7 Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 Query: 1763 ELSQKTRSECTPEELEQIRRERNRMHAKRTRDRKKLHLEATEGMIARLEEENQKLLESLEAI 1948
EL K RS+C+PEEL++IRRERNRMHAKRTRDRK+L E + +LE+EN LL+ L I
Sbjct: 103 ELLGKDRSQCSPEELDRIRRERNRMHAKRTRDRKRLFTEQMSEICRQLEDENDALLDYLTKI 164 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.23.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.23.2 >prot_A-nodosum_M_contig10.23.2 ID=prot_A-nodosum_M_contig10.23.2|Name=mRNA_A-nodosum_M_contig10.23.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1108bp MTDSYQRQPGGLGPHEPKMRPPAFTSQQGLPRQTTMNVSPISRPAVNMGVback to top mRNA from alignment at A-nodosum_M_contig10:252143..256995+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.23.2 ID=mRNA_A-nodosum_M_contig10.23.2|Name=mRNA_A-nodosum_M_contig10.23.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4853bp|location=Sequence derived from alignment at A-nodosum_M_contig10:252143..256995+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:252143..256995+ >mRNA_A-nodosum_M_contig10.23.2 ID=mRNA_A-nodosum_M_contig10.23.2|Name=mRNA_A-nodosum_M_contig10.23.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=3324bp|location=Sequence derived from alignment at A-nodosum_M_contig10:252143..256995+ (Ascophyllum nodosum dioecious)back to top |